2-234756120-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234756120
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234756120
    reference: chr 2
allele count: 1
allele frequency: 8.254911672445104e-6
allele num: 121140
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.338-13G>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.241-1654G>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-13G>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.338-1654G>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.241-3191G>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.241-3191G>C
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11671
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6141
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13536
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3255
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4838
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2365
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1745
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

2-234756121-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234756121
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234756121
    reference: chr 2
allele count: 1
allele frequency: 8.255729476256522e-6
allele num: 121128
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.241-1655T>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.338-1655T>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.338-14T>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-14T>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.241-3192T>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.241-3192T>C
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18844
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13486
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3253
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11654
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6134
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3616
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7892
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 1745
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 2
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
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genotype quality: GenotypeQuality
  all individuals: 3467
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2364
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

2-234756129-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234756129
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234756129
    reference: chr 2
allele count: 1
allele frequency: 8.262414277451872e-6
allele num: 121030
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-22G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.338-22G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.241-1663G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.241-3200G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.338-1663G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.241-3200G>A
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12658
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18577
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11647
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 117
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9750
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 402
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP

2-234756141-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234756141
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234756141
    reference: chr 2
allele count: 2
allele frequency: 1.653603201375798e-5
allele num: 120948
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-34A>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.338-1675A>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.241-3212A>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.241-3212A>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.338-34A>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.241-1675A>T
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6094
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3294
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2355
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD

2-234756153-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234756153
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234756153
    reference: chr 2
allele count: 1
allele frequency: 8.285965232089886e-6
allele num: 120686
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-46C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.241-3224C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.241-1687C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.241-3224C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.338-46C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.338-1687C>T
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10370
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6053
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14112
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6310
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 6.75e1
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genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1747
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6562
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14806
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9748
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2888
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1140
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 1730
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

2-234756158-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234756158
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234756158
    reference: chr 2
allele count: 1
allele frequency: 8.298341991270144e-6
allele num: 120506
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.338-1692A>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-51A>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.241-1692A>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.241-3229A>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.338-51A>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.241-3229A>G
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10010
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13523
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 378
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6040
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
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genotype depth: GenotypeDepth
  all individuals: 3243
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
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genotype depth: GenotypeDepth
  all individuals: 478
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genotype quality: GenotypeQuality
  all individuals: 2352
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genotype quality: GenotypeQuality
  all individuals: 39
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genotype quality: GenotypeQuality
  all individuals: 3990
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genotype quality: GenotypeQuality
  all individuals: 66
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genotype quality: GenotypeQuality
  all individuals: 1071
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genotype quality: GenotypeQuality
  all individuals: 2099
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genotype quality: GenotypeQuality
  all individuals: 1912
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 19
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genotype quality: GenotypeQuality
  all individuals: 4612
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

2-234758358-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758358
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758358
    reference: chr 2
allele count: 2
allele frequency: 1.004924128228319e-4
allele num: 19902
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2853C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.337+51C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2251C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.337+51C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2853C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2853C>T
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34269
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2793
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 122
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 10891
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

2-234758370-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758370
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758370
    reference: chr 2
allele count: 1
allele frequency: 5.026135906714917e-5
allele num: 19896
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2841G>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.337+39G>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2841G>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.337+39G>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2263G>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2841G>C
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 26870
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

2-234758376-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758376
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758376
    reference: chr 2
allele count: 2
allele frequency: 1.002204850671477e-4
allele num: 19956
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.337+33A>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2835A>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2269A>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2835A>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2835A>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.337+33A>T
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3152
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34890
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1587
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5366
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2172
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28590
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

2-234758378-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758378
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758378
    reference: chr 2
allele count: 18
allele frequency: 9.012617664730623e-4
allele num: 19972
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.337+31T>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2833T>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.337+31T>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2833T>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2833T>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2271T>C
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35009
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3314
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3449
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2448
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4773
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 9.75e1
  variant carriers: 17
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-234758393-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758393
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758393
    reference: chr 2
allele count: 530
allele frequency: 2.624541943151431e-2
allele num: 20194
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2818G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.337+16G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2286G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.337+16G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2818G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2818G>A
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 3.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 34490
  bin: 2.5e0
  variant carriers: 213
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3586
  bin: 2.25e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5421
  bin: 7.5e0
  variant carriers: 427
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 1.25e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 1.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 3.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 2.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 3.25e1
  variant carriers: 56
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3955
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 8.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 1.75e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 7.25e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 1084
  bin: 1.25e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 2.75e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 30294
  bin: 7.5e0
  variant carriers: 81
num of homozygotes: 14
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

2-234758409-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758409
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758409
    reference: chr 2
allele count: 1
allele frequency: 4.914004914004914e-5
allele num: 20350
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2802G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.337G>A
  hgvsp: ENSP00000403668.1:p.Ala113Thr
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2802G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.337G>A
  hgvsp: ENSP00000414109.1:p.Asp113Asn
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2302G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2802G>A
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3671
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34750
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7863
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6213
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1026
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2408
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp113Asn
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

2-234758410-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758410
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758410
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 20376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2801C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2801C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.336C>T
  hgvsp: ENST00000453122.1:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2303C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2801C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.336C>T
  hgvsp: ENST00000411486.2:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2977
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8232
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34661
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32237
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2134
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6710
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5145
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
hgvs: c.336C>T
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP

2-234758411-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758411
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758411
    reference: chr 2
allele count: 1
allele frequency: 4.902441415825081e-5
allele num: 20398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2800C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2800C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.335C>T
  hgvsp: ENSP00000414109.1:p.Ala112Val
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2304C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.335C>T
  hgvsp: ENSP00000403668.1:p.Ala112Val
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2800C>T
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34560
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8493
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2145
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6945
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32189
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1175
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala112Val
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

2-234758426-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758426
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758426
    reference: chr 2
allele count: 1
allele frequency: 4.85201358563804e-5
allele num: 20610
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2785G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.320G>A
  hgvsp: ENSP00000414109.1:p.Arg107His
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2785G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.320G>A
  hgvsp: ENSP00000403668.1:p.Arg107His
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2319G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2785G>A
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11197
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3057
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1392
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1297
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31436
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5525
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1921
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg107His
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

2-234758427-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758427
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758427
    reference: chr 2
allele count: 1
allele frequency: 4.832318546438581e-5
allele num: 20694
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2320C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.319C>T
  hgvsp: ENSP00000403668.1:p.Arg107Cys
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2784C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.319C>T
  hgvsp: ENSP00000414109.1:p.Arg107Cys
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2784C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2784C>T
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3998
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31484
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9433
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1482
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5638
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1627
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg107Cys
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

2-234758435-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758435
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758435
    reference: chr 2
allele count: 1
allele frequency: 4.791566842357451e-5
allele num: 20870
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.311C>T
  hgvsp: ENSP00000403668.1:p.Pro104Leu
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2776C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2328C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2776C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.311C>T
  hgvsp: ENSP00000414109.1:p.Pro104Leu
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2776C>T
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11869
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4067
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32873
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1732
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1309
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31343
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5724
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1537
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro104Leu
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-234758446-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758446
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758445
    reference: chr 2
allele count: 1
allele frequency: 4.762811964183654e-5
allele num: 20996
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2764delG
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.299delG
  hgvsp: ENSP00000414109.1:p.Gly100ValfsTer34
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.299delG
  hgvsp: ENSP00000403668.1:p.Gly100ValfsTer?
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2764delG
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2340delG
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2764delG
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12084
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32667
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4103
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5835
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10097
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1443
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly100ValfsTer34
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: AC
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

2-234758449-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758449
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758449
    reference: chr 2
allele count: 3
allele frequency: 1.42571998859424e-4
allele num: 21042
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2762G>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2342G>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2762G>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.297G>C
  hgvsp: ENSP00000403668.1:p.Trp99Cys
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.297G>C
  hgvsp: ENSP00000414109.1:p.Trp99Cys
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2762G>C
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32717
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11967
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5872
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10269
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Trp99Cys
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

2-234758466-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758466
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758466
    reference: chr 2
allele count: 1
allele frequency: 4.813246053138236e-5
allele num: 20776
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2359G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.280G>A
  hgvsp: ENSP00000414109.1:p.Val94Met
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2745G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2745G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2745G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.280G>A
  hgvsp: ENSP00000403668.1:p.Val94Met
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3945
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34068
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9151
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5671
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1273
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32717
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7169
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val94Met
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

2-234758467-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758467
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758467
    reference: chr 2
allele count: 1
allele frequency: 4.819741661846925e-5
allele num: 20748
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2360C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2744C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.279C>T
  hgvsp: ENST00000411486.2:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2744C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2744C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.279C>T
  hgvsp: ENST00000453122.1:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3121
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34067
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8900
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3906
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32735
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 967
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6892
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1779
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser93Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/2-234758473-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758473
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758473
    reference: chr 2
allele count: 1
allele frequency: 4.84402247626429e-5
allele num: 20644
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2738T>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2738T>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2366T>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.273T>G
  hgvsp: ENSP00000403668.1:p.Asp91Glu
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2738T>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.273T>G
  hgvsp: ENSP00000414109.1:p.Asp91Glu
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3789
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8075
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32903
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1802
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6213
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp91Glu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

2-234758473-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758473
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758473
    reference: chr 2
allele count: 2
allele frequency: 9.688044952528579e-5
allele num: 20644
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2738T>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.273T>C
  hgvsp: ENST00000411486.2:c.273T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.273T>C
  hgvsp: ENST00000453122.1:c.273T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2738T>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2366T>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2738T>C
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8075
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3789
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34227
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1802
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32903
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asp91Asp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum

2-234758483-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758483
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758483
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 20310
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2376A>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2728A>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.263A>G
  hgvsp: ENSP00000414109.1:p.Asp88Gly
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2728A>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.263A>G
  hgvsp: ENSP00000403668.1:p.Asp88Gly
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2728A>G
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6000
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33187
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30722
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1224
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1302
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asp88Gly
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD

2-234758485-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758485
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758485
    reference: chr 2
allele count: 10
allele frequency: 4.923682914820286e-4
allele num: 20310
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2726G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.261G>A
  hgvsp: ENST00000411486.2:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2726G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2378G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2726G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.261G>A
  hgvsp: ENST00000453122.1:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5956
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33358
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5030
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 2502
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3759
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala87Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

2-234758487-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758487
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758487
    reference: chr 2
allele count: 3
allele frequency: 1.479289940828402e-4
allele num: 20280
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.259G>A
  hgvsp: ENSP00000403668.1:p.Ala87Thr
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2724G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2380G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2724G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.259G>A
  hgvsp: ENSP00000414109.1:p.Ala87Thr
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2724G>A
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5739
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33197
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2891
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31352
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2399
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3663
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 963
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 2.75e1
  variant carriers: 1
hgvs: p.Ala87Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP

2-234758488-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758488
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758488
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 20228
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2723C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2381C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.258C>T
  hgvsp: ENST00000411486.2:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2723C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.258C>T
  hgvsp: ENST00000453122.1:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2723C>T
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3494
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32895
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2357
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31077
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3494
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro86Pro
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum

2-234758490-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758490
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758490
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 20176
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2383C>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2721C>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.256C>A
  hgvsp: ENSP00000403668.1:p.Pro86Thr
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.256C>A
  hgvsp: ENSP00000414109.1:p.Pro86Thr
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2721C>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2721C>A
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3487
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5427
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32568
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3354
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30741
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro86Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

2-234758492-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758492
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758492
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 20170
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.254A>C
  hgvsp: ENSP00000414109.1:p.Lys85Thr
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.254A>C
  hgvsp: ENSP00000403668.1:p.Lys85Thr
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2385A>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2719A>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2719A>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2719A>C
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3486
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5307
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32430
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4925
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1270
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1972
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3418
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys85Thr
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-234758497-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758497
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758497
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 20016
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2714C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.249C>T
  hgvsp: ENST00000411486.2:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.249C>T
  hgvsp: ENST00000453122.1:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2714C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2390C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2714C>T
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4901
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31484
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29898
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2977
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1281
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2052
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser83Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS

2-234758498-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758498
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758498
    reference: chr 2
allele count: 5
allele frequency: 2.502001601281025e-4
allele num: 19984
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.248C>G
  hgvsp: ENSP00000414109.1:p.Ser83Cys
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2713C>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2391C>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.248C>G
  hgvsp: ENSP00000403668.1:p.Ser83Cys
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2713C>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2713C>G
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4793
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31205
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2151
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2791
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4689
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1193
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser83Cys
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

2-234758498-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758498
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758498
    reference: chr 2
allele count: 1
allele frequency: 5.004003202562049e-5
allele num: 19984
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.248C>T
  hgvsp: ENSP00000403668.1:p.Ser83Phe
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2713C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2713C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2391C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.248C>T
  hgvsp: ENSP00000414109.1:p.Ser83Phe
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2713C>T
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31205
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4793
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1193
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29554
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2791
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser83Phe
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

2-234758500-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758500
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758500
    reference: chr 2
allele count: 3810
allele frequency: 1.900628554325052e-1
allele num: 20046
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2393C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2711C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.246C>T
  hgvsp: ENST00000453122.1:c.246C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2711C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2711C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.246C>T
  hgvsp: ENST00000411486.2:c.246C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 263
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.75e1
  variant carriers: 201
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 1.25e1
  variant carriers: 306
genotype depth: GenotypeDepth
  all individuals: 5443
  bin: 7.5e0
  variant carriers: 1899
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 193
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 2.75e1
  variant carriers: 193
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.25e1
  variant carriers: 188
genotype depth: GenotypeDepth
  all individuals: 27744
  bin: 2.5e0
  variant carriers: 1377
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 208
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 222
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 1.75e1
  variant carriers: 249
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 2.25e1
  variant carriers: 194
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 3.25e1
  variant carriers: 171
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 131
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 157
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 225
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 3.75e1
  variant carriers: 196
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.75e1
  variant carriers: 166
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 9.25e1
  variant carriers: 103
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 1.75e1
  variant carriers: 334
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 3.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 2.75e1
  variant carriers: 368
genotype quality: GenotypeQuality
  all individuals: 3774
  bin: 9.75e1
  variant carriers: 3448
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 5.75e1
  variant carriers: 138
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 8.25e1
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 70
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 7.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 2285
  bin: 2.25e1
  variant carriers: 273
hgvs: p.Ser82Ser
num of homozygotes: 391
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

2-234758501-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758501
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758501
    reference: chr 2
allele count: 1
allele frequency: 5.082333807684488e-5
allele num: 19676
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.245C>A
  hgvsp: ENSP00000403668.1:p.Ser82Tyr
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.245C>A
  hgvsp: ENSP00000414109.1:p.Ser82Tyr
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2710C>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2394C>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2710C>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2710C>A
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3353
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31824
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2696
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4568
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2166
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2798
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30178
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1153
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser82Tyr
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/2-234758502-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758502
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758502
    reference: chr 2
allele count: 1
allele frequency: 5.145091582630171e-5
allele num: 19436
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2709T>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.244T>G
  hgvsp: ENSP00000403668.1:p.Ser82Ala
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2709T>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2395T>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.244T>G
  hgvsp: ENSP00000414109.1:p.Ser82Ala
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2709T>G
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2700
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31003
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4398
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2726
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28794
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2408
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1106
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser82Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP

2-234758503-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758503
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758503
    reference: chr 2
allele count: 31
allele frequency: 1.596785824662615e-3
allele num: 19414
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.243C>T
  hgvsp: ENST00000411486.2:c.243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2708C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2708C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2396C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.243C>T
  hgvsp: ENST00000453122.1:c.243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2708C>T
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2695
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31059
  bin: 2.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3090
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 28838
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 1
hgvs: c.243C>T
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-234758503-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758503
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758503
    reference: chr 2
allele count: 1
allele frequency: 5.150922015040692e-5
allele num: 19414
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2708C>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.243C>G
  hgvsp: ENSP00000414109.1:p.Asp81Glu
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2396C>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2708C>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.243C>G
  hgvsp: ENSP00000403668.1:p.Asp81Glu
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2708C>G
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2695
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3090
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31059
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2417
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28838
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4391
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp81Glu
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP

2-234758504-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758504
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758504
    reference: chr 2
allele count: 4
allele frequency: 2.060793405461103e-4
allele num: 19410
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.242A>G
  hgvsp: ENSP00000414109.1:p.Asp81Gly
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.242A>G
  hgvsp: ENSP00000403668.1:p.Asp81Gly
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2397A>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2707A>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2707A>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2707A>G
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3044
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4423
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29033
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2646
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asp81Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

2-234758505-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758505
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758505
    reference: chr 2
allele count: 1
allele frequency: 5.187260089220873e-5
allele num: 19278
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2706G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2398G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2706G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.241G>A
  hgvsp: ENSP00000414109.1:p.Asp81Asn
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2706G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.241G>A
  hgvsp: ENSP00000403668.1:p.Asp81Asn
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30632
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2911
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2791
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2305
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28320
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp81Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

2-234758508-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758508
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758508
    reference: chr 2
allele count: 1
allele frequency: 5.249343832020998e-5
allele num: 19050
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2703G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.241-3G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2401G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.241-3G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2703G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2703G>A
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30100
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2684
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2758
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2123
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4256
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2985
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
hgvs: c.241-3G>A
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/2-234758509-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758509
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758509
    reference: chr 2
allele count: 2
allele frequency: 1.059209829467217e-4
allele num: 18882
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2702G>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.241-4G>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2402G>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.241-4G>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2702G>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2702G>T
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29849
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2008
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3397
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27149
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 3.75e1
  variant carriers: 1
hgvs: c.241-4G>T
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-234758515-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758515
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758515
    reference: chr 2
allele count: 5
allele frequency: 2.771004211926402e-4
allele num: 18044
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.241-10G>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2696G>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2696G>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.241-10G>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2696G>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2408G>T
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 28230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4268
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24683
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4002
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.25e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-234758517-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758517
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758517
    reference: chr 2
allele count: 112
allele frequency: 6.601438170458564e-3
allele num: 16966
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2694C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.241-12C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2694C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2410C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.241-12C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2694C>T
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2580
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 1.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 1.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 27709
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 1.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 8.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 23724
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3952
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 8
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD

2-234758525-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758525
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758525
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 19328
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.241-20A>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2686A>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.241-20A>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2686A>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2686A>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2418A>G
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27772
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1603
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3350
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24510
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

2-234758532-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758532
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758531
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 19246
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2678delA
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.241-28delA
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.241-28delA
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2426delA
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2678delA
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2678delA
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2465
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26036
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3765
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1028
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4588
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1445
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21521
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: AT
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

2-234758539-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758539
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758539
    reference: chr 2
allele count: 1480
allele frequency: 7.713958094443865e-2
allele num: 19186
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.241-34A>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2672A>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2672A>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.241-34A>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2672A>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2432A>G
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 1.25e1
  variant carriers: 125
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 3.25e1
  variant carriers: 228
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 1.75e1
  variant carriers: 121
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 4.25e1
  variant carriers: 144
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 2.75e1
  variant carriers: 208
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 7.5e0
  variant carriers: 238
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 3.75e1
  variant carriers: 186
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 23586
  bin: 2.5e0
  variant carriers: 269
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 4.75e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 2.25e1
  variant carriers: 173
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1249
  bin: 2.25e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 8.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 17224
  bin: 7.5e0
  variant carriers: 143
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 6469
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 4.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 6.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 1987
  bin: 9.75e1
  variant carriers: 1375
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 3.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 7.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 8.25e1
  variant carriers: 14
num of homozygotes: 71
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

2-234758552-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234758552
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234758552
    reference: chr 2
allele count: 2
allele frequency: 1.056189269117026e-4
allele num: 18936
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.215-2445T>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.241-47T>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+2659T>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+2659T>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.241-47T>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+2659T>C
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23657
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9620
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2529
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14087
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum

2-234761183-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234761183
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234761183
    reference: chr 2
allele count: 2
allele frequency: 1.66536213299582e-5
allele num: 120094
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.240+28A>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.240+28A>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+28A>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+28A>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+28A>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.214+28A>G
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7655
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15457
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20361
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6795
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24763
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3769
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1803
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2944
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2847
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum

2-234761195-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234761195
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234761194
    reference: chr 2
allele count: 1
allele frequency: 8.313381218409152e-6
allele num: 120288
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.240+15delA
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+15delA
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+15delA
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+15delA
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.240+15delA
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.214+15delA
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3465
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16038
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7973
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21813
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1423
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1852
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2979
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9560
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26514
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3926
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: AT
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD

2-234761197-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234761197
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234761197
    reference: chr 2
allele count: 1
allele frequency: 8.310479514667997e-6
allele num: 120330
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.240+14A>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+14A>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.214+14A>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+14A>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+14A>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.240+14A>G
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16107
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7981
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7003
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27073
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2990
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1855
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

2-234761201-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234761201
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234761201
    reference: chr 2
allele count: 3
allele frequency: 2.4916115743663e-5
allele num: 120404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.214+10G>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.240+10G>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.240+10G>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+10G>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+10G>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+10G>C
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8127
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22170
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3494
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7034
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9577
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1449
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3093
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3039
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1869
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/2-234761202-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234761202
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234761201
    reference: chr 2
allele count: 12
allele frequency: 9.963467286615742e-5
allele num: 120440
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.214+8delG
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.240+8delG
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.240+8delG
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+8delG
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+8delG
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+8delG
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16311
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8134
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22246
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27356
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7058
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4000
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1457
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
hgvs: c.240+8delG
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: AC
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-234761204-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234761204
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234761204
    reference: chr 2
allele count: 1
allele frequency: 8.303854649328218e-6
allele num: 120426
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.214+7A>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.240+7A>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.240+7A>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.240+7A>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.240+7A>G
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.240+7A>G
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22265
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16403
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3069
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27365
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3126
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7084
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4018
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
hgvs: c.240+7A>G
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum

2-234761214-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234761214
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234761214
    reference: chr 2
allele count: 1
allele frequency: 8.293799555452344e-6
allele num: 120572
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.237C>G
  hgvsp: ENSP00000403668.1:p.Ile79Met
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.237C>G
  hgvsp: ENSP00000407208.1:p.Ile79Met
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.237C>G
  hgvsp: ENSP00000414109.1:p.Ile79Met
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.237C>G
  hgvsp: ENSP00000393253.1:p.Ile79Met
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.237C>G
  hgvsp: ENSP00000401944.1:p.Ile79Met
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.211C>G
  hgvsp: ENSP00000414051.1:p.Pro71Ala
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22304
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3535
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16703
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27568
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1485
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4103
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile79Met
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP

2-234761214-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234761214
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234761214
    reference: chr 2
allele count: 2
allele frequency: 1.658759911090469e-5
allele num: 120572
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.237C>A
  hgvsp: ENST00000453122.1:c.237C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.211C>A
  hgvsp: ENSP00000414051.1:p.Pro71Thr
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.237C>A
  hgvsp: ENST00000411486.2:c.237C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.237C>A
  hgvsp: ENST00000441687.1:c.237C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.237C>A
  hgvsp: ENST00000432087.1:c.237C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.237C>A
  hgvsp: ENST00000414924.1:c.237C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16703
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3535
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22304
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9608
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1485
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27568
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7186
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3131
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro71Thr
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-234761217-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234761217
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234761217
    reference: chr 2
allele count: 2
allele frequency: 1.658402295228776e-5
allele num: 120598
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.234G>A
  hgvsp: ENST00000441687.1:c.234G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.234G>A
  hgvsp: ENST00000414924.1:c.234G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.208G>A
  hgvsp: ENSP00000414051.1:p.Asp70Asn
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.234G>A
  hgvsp: ENST00000453122.1:c.234G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.234G>A
  hgvsp: ENST00000411486.2:c.234G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.234G>A
  hgvsp: ENST00000432087.1:c.234G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22268
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16791
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1491
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3180
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27314
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4138
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7222
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp70Asn
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

2-234761225-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234761225
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234761225
    reference: chr 2
allele count: 2
allele frequency: 1.655656550605143e-5
allele num: 120798
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.226G>C
  hgvsp: ENSP00000414109.1:p.Glu76Gln
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.226G>C
  hgvsp: ENSP00000393253.1:p.Glu76Gln
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.226G>C
  hgvsp: ENSP00000401944.1:p.Glu76Gln
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.226G>C
  hgvsp: ENSP00000407208.1:p.Glu76Gln
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.200G>C
  hgvsp: ENSP00000414051.1:p.Arg67Pro
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.226G>C
  hgvsp: ENSP00000403668.1:p.Glu76Gln
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6499
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5709
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8201
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4503
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7501
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4165
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12014
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu76Gln
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

2-234761225-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234761225
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234761225
    reference: chr 2
allele count: 54994
allele frequency: 4.55255881719896e-1
allele num: 120798
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.226G>A
  hgvsp: ENSP00000414109.1:p.Glu76Lys
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.226G>A
  hgvsp: ENSP00000407208.1:p.Glu76Lys
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.226G>A
  hgvsp: ENSP00000403668.1:p.Glu76Lys
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.226G>A
  hgvsp: ENSP00000393253.1:p.Glu76Lys
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.200G>A
  hgvsp: ENSP00000414051.1:p.Arg67Gln
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.226G>A
  hgvsp: ENSP00000401944.1:p.Glu76Lys
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10824
  bin: 2.75e1
  variant carriers: 3882
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 5.25e1
  variant carriers: 3047
genotype depth: GenotypeDepth
  all individuals: 4503
  bin: 4.75e1
  variant carriers: 4157
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 1.75e1
  variant carriers: 754
genotype depth: GenotypeDepth
  all individuals: 8201
  bin: 2.25e1
  variant carriers: 2142
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.75e1
  variant carriers: 821
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.25e1
  variant carriers: 186
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 6.75e1
  variant carriers: 1195
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.25e1
  variant carriers: 452
genotype depth: GenotypeDepth
  all individuals: 6499
  bin: 3.75e1
  variant carriers: 5619
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 5.75e1
  variant carriers: 2170
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 6.25e1
  variant carriers: 1532
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 7.25e1
  variant carriers: 909
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 8.25e1
  variant carriers: 609
genotype depth: GenotypeDepth
  all individuals: 7501
  bin: 3.25e1
  variant carriers: 5170
genotype depth: GenotypeDepth
  all individuals: 4165
  bin: 9.75e1
  variant carriers: 3469
genotype depth: GenotypeDepth
  all individuals: 5709
  bin: 4.25e1
  variant carriers: 5125
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 8.75e1
  variant carriers: 569
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 5.75e1
  variant carriers: 206
genotype quality: GenotypeQuality
  all individuals: 12014
  bin: 6.25e1
  variant carriers: 389
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 5.25e1
  variant carriers: 260
genotype quality: GenotypeQuality
  all individuals: 2483
  bin: 6.75e1
  variant carriers: 462
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 3.75e1
  variant carriers: 123
genotype quality: GenotypeQuality
  all individuals: 39324
  bin: 9.75e1
  variant carriers: 37058
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.25e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 8.75e1
  variant carriers: 403
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.75e1
  variant carriers: 56
hgvs: p.Glu76Lys
num of homozygotes: 13323
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD

2-234761241-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234761241
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234761241
    reference: chr 2
allele count: 1
allele frequency: 8.329723786359244e-6
allele num: 120052
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.210A>G
  hgvsp: ENST00000411486.2:c.210A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.210A>G
  hgvsp: ENST00000441687.1:c.210A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.184A>G
  hgvsp: ENSP00000414051.1:p.Asn62Asp
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.210A>G
  hgvsp: ENST00000453122.1:c.210A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.210A>G
  hgvsp: ENST00000414924.1:c.210A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.210A>G
  hgvsp: ENST00000432087.1:c.210A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15250
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26585
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1965
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1383
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38218
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2177
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asn62Asp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

2-234761249-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234761249
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234761249
    reference: chr 2
allele count: 1
allele frequency: 8.359246999030327e-6
allele num: 119628
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.202G>C
  hgvsp: ENSP00000401944.1:p.Gly68Arg
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.176G>C
  hgvsp: ENSP00000414051.1:p.Trp59Ser
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.202G>C
  hgvsp: ENSP00000407208.1:p.Gly68Arg
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.202G>C
  hgvsp: ENSP00000403668.1:p.Gly68Arg
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.202G>C
  hgvsp: ENSP00000393253.1:p.Gly68Arg
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.202G>C
  hgvsp: ENSP00000414109.1:p.Gly68Arg
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26268
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2338
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14917
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1756
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6946
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly68Arg
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

2-234761251-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234761251
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234761251
    reference: chr 2
allele count: 2
allele frequency: 1.673752217721688e-5
allele num: 119492
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.200G>A
  hgvsp: ENSP00000414109.1:p.Gly67Asp
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.200G>A
  hgvsp: ENSP00000403668.1:p.Gly67Asp
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.200G>A
  hgvsp: ENSP00000393253.1:p.Gly67Asp
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.200G>A
  hgvsp: ENSP00000407208.1:p.Gly67Asp
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.174G>A
  hgvsp: ENST00000454020.1:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.200G>A
  hgvsp: ENSP00000401944.1:p.Gly67Asp
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26151
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1864
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37614
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1936
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6860
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2049
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly67Asp
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

2-234761254-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234761254
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234761254
    reference: chr 2
allele count: 1
allele frequency: 8.391514500537057e-6
allele num: 119168
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.197G>A
  hgvsp: ENSP00000414109.1:p.Trp66Ter
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.171G>A
  hgvsp: ENST00000454020.1:c.171G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.197G>A
  hgvsp: ENSP00000393253.1:p.Trp66Ter
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.197G>A
  hgvsp: ENSP00000401944.1:p.Trp66Ter
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.197G>A
  hgvsp: ENSP00000407208.1:p.Trp66Ter
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.197G>A
  hgvsp: ENSP00000403668.1:p.Trp66Ter
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25936
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14458
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5703
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6735
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2306
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Trp66Ter
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-234761264-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234761264
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234761264
    reference: chr 2
allele count: 1
allele frequency: 8.486226853816256e-6
allele num: 117838
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.187T>C
  hgvsp: ENST00000453122.1:c.187T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.187T>C
  hgvsp: ENST00000432087.1:c.187T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.187T>C
  hgvsp: ENST00000441687.1:c.187T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.187T>C
  hgvsp: ENST00000414924.1:c.187T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.161T>C
  hgvsp: ENSP00000414051.1:p.Ile54Thr
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.187T>C
  hgvsp: ENST00000411486.2:c.187T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12984
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4312
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24394
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7700
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33885
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1213
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1062
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ile54Thr
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

2-234761266-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234761266
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234761266
    reference: chr 2
allele count: 1
allele frequency: 8.50065455040038e-6
allele num: 117638
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.185G>A
  hgvsp: ENSP00000403668.1:p.Gly62Glu
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.159G>A
  hgvsp: ENST00000454020.1:c.159G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.185G>A
  hgvsp: ENSP00000414109.1:p.Gly62Glu
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.185G>A
  hgvsp: ENSP00000407208.1:p.Gly62Glu
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.185G>A
  hgvsp: ENSP00000401944.1:p.Gly62Glu
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.185G>A
  hgvsp: ENSP00000393253.1:p.Gly62Glu
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12875
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4558
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7650
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24186
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6187
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1116
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5688
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1832
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4339
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly62Glu
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

2-234761289-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234761289
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234761289
    reference: chr 2
allele count: 2
allele frequency: 1.740977384703773e-5
allele num: 114878
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.185-23T>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.185-23T>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.185-23T>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.159-23T>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.185-23T>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.185-23T>C
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11930
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4740
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9561
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6060
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1555
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4223
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1110
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2491
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8931
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3020
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1274
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4390
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

2-234761297-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234761297
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234761297
    reference: chr 2
allele count: 2
allele frequency: 1.75842726265628e-5
allele num: 113738
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.159-31G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.185-31G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.185-31G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.185-31G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.185-31G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.185-31G>A
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12864
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14733
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5041
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3336
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9358
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9981
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1449
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3960
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4524
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17242
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ

2-234761298-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234761298
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234761298
    reference: chr 2
allele count: 6
allele frequency: 5.28215511928867e-5
allele num: 113590
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.185-32T>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.185-32T>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.159-32T>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.185-32T>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.185-32T>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.185-32T>C
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11767
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3435
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15008
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10700
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6722
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1580
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1443
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10019
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6751
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15221
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5676
  bin: 9.75e1
  variant carriers: 6
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

2-234761303-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234761303
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234761303
    reference: chr 2
allele count: 1
allele frequency: 8.894264977942223e-6
allele num: 112432
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.159-37G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.185-37G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.185-37G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.185-37G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.185-37G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.185-37G>A
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9362
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3818
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6295
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4117
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14953
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13845
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3037
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4417
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2308
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6199
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1076
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

2-234761309-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234761309
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234761309
    reference: chr 2
allele count: 6
allele frequency: 5.424366253209416e-5
allele num: 110612
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.185-43G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.159-43G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.185-43G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.185-43G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.185-43G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.185-43G>A
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15313
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4571
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6715
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7878
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14556
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8632
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2466
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2869
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4502
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3513
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1056
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

2-234761310-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234761310
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234761310
    reference: chr 2
allele count: 6
allele frequency: 5.4339950731778e-5
allele num: 110416
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.185-44C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.185-44C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.159-44C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.185-44C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.185-44C>T
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.185-44C>T
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7949
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14586
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6707
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3334
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4613
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7666
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2441
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2862
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5672
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9458
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1057
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3488
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

2-234761315-A-ACTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234761315
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234761318
    reference: chr 2
allele count: 1
allele frequency: 9.152982957145734e-6
allele num: 109254
alternate allele: ACTT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.185-52_185-50dupAAG
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.185-52_185-50dupAAG
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.159-52_159-50dupAAG
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.185-52_185-50dupAAG
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.185-52_185-50dupAAG
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.185-52_185-50dupAAG
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15022
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9539
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14266
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3055
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5421
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7203
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1310
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7777
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4482
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2239
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1051
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD

2-234762439-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234762439
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234762439
    reference: chr 2
allele count: 1
allele frequency: 8.361903169161301e-6
allele num: 119590
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.184+51G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.184+51G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.184+51G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.158+51G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.184+51G>A
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.184+51G>A
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3362
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3490
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25024
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2807
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51810
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD

2-234762449-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 234762449
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 234762449
    reference: chr 2
allele count: 1
allele frequency: 8.346548702111677e-6
allele num: 119810
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000407208
  ensembl transcript: ENST00000432087
  gene symbol: HJURP
  hgvsc: ENST00000432087.1:c.184+41T>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000403668
  ensembl transcript: ENST00000453122
  gene symbol: HJURP
  hgvsc: ENST00000453122.1:c.184+41T>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414051
  ensembl transcript: ENST00000454020
  gene symbol: HJURP
  hgvsc: ENST00000454020.1:c.158+41T>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000414109
  ensembl transcript: ENST00000411486
  gene symbol: HJURP
  hgvsc: ENST00000411486.2:c.184+41T>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000401944
  ensembl transcript: ENST00000441687
  gene symbol: HJURP
  hgvsc: ENST00000441687.1:c.184+41T>C
  variant of: http://identifiers.org/hgnc/25444
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000123485
  ensembl protein: ENSP00000393253
  ensembl transcript: ENST00000414924
  gene symbol: HJURP
  hgvsc: ENST00000414924.1:c.184+41T>C
  variant of: http://identifiers.org/hgnc/25444
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25024
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3491
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 72
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3466
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3617
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9750
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7891
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25864
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.275e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.743e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.638e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

DP
type: SiteQuality
SIO_000300: 1.94146e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.46e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

GenotypeQuality
all individuals: 253
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9750
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 159
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25834
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502629601803156e-5
allele num: 66550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-1

FS
type: SiteQuality
SIO_000300: 3.314e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.940297e6

VQSLOD
type: SiteQuality
SIO_000300: 1.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.57e0

QD
type: SiteQuality
SIO_000300: 1.084e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e0

GenotypeQuality
all individuals: 652
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7814
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4829
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24680
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3609
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1742
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66478
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

MQ
type: SiteQuality
SIO_000300: 5.939e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.83e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.88e-1

FS
type: SiteQuality
SIO_000300: 3.165e0

QD
type: SiteQuality
SIO_000300: 1.214e1

DP
type: SiteQuality
SIO_000300: 1.930191e6

GenotypeQuality
all individuals: 1738
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1450
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 709
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9752
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4715
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3580
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.932367149758454e-4
allele num: 10350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

DP
type: SiteQuality
SIO_000300: 1.896852e6

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQ
type: SiteQuality
SIO_000300: 5.944e1

FS
type: SiteQuality
SIO_000300: 4.046e0

QD
type: SiteQuality
SIO_000300: 1.623e1

GenotypeQuality
all individuals: 3094
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1761
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2053
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 937
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3158
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2351
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4620
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3536
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509570678099149e-5
allele num: 66244
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.852318e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 9.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.16e-1

FS
type: SiteQuality
SIO_000300: 1.922e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.021e0

VQSLOD
type: SiteQuality
SIO_000300: 4.16e-1

QD
type: SiteQuality
SIO_000300: 9.970000000000001e0

GenotypeQuality
all individuals: 1205
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 946
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6269
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3539
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10637
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1722
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4247
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66130
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.691800736576855e-5
allele num: 10318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.104e0

VQSLOD
type: SiteQuality
SIO_000300: -2.016e0

QD
type: SiteQuality
SIO_000300: 2.138e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.08e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.51e-1

DP
type: SiteQuality
SIO_000300: 1.84585e6

MQ
type: SiteQuality
SIO_000300: 5.907e1

GenotypeQuality
all individuals: 329
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 513
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 564
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7702
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.205690860863275e-4
allele num: 8294
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.787878787878788e-4
allele num: 2640
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

VQSLOD
type: SiteQuality
SIO_000300: -1.483e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.51e-2

QD
type: SiteQuality
SIO_000300: 7.62e0

DP
type: SiteQuality
SIO_000300: 3.38712e5

GenotypeQuality
all individuals: 391
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 550
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3686
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1872
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.208021261174197e-4
allele num: 8278
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

DP
type: SiteQuality
SIO_000300: 3.49473e5

QD
type: SiteQuality
SIO_000300: 1.958e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.560999999999999e-1

GenotypeQuality
all individuals: 436
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4071
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1145
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 343
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7768
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2630
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.134796238244514e-3
allele num: 638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.657e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.5e-2

QD
type: SiteQuality
SIO_000300: 1.029e1

DP
type: SiteQuality
SIO_000300: 3.5674e5

GenotypeQuality
all individuals: 29394
bin: 7.5e0
variant carriers: 3

GenotypeQuality
all individuals: 639
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1499
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4241
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1154
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

African
type: Population
allele count: 18
allele frequency: 6.818181818181818e-3
allele num: 2640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7776
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.61e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.13e-1

DP
type: SiteQuality
SIO_000300: 3.60193e5

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.22e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

GenotypeQuality
all individuals: 173
bin: 8.75e1
variant carriers: 25

GenotypeQuality
all individuals: 1254
bin: 9.75e1
variant carriers: 534

GenotypeQuality
all individuals: 3785
bin: 2.25e1
variant carriers: 60

GenotypeQuality
all individuals: 1179
bin: 6.75e1
variant carriers: 40

GenotypeQuality
all individuals: 4635
bin: 6.25e1
variant carriers: 49

GenotypeQuality
all individuals: 171
bin: 9.25e1
variant carriers: 28

GenotypeQuality
all individuals: 517
bin: 7.75e1
variant carriers: 19

GenotypeQuality
all individuals: 108
bin: 5.75e1
variant carriers: 30

European (Finnish)
type: Population
allele count: 2
allele frequency: 4.761904761904762e-2
allele num: 42
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 1.54639175257732e-2
allele num: 194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 408
allele frequency: 4.830689083589865e-2
allele num: 8446
num of homozygotes: 11

African
type: Population
allele count: 13
allele frequency: 4.916792738275341e-3
allele num: 2644
num of homozygotes: 1

South Asian
type: Population
allele count: 98
allele frequency: 1.253838280450358e-2
allele num: 7816
num of homozygotes: 2

Latino
type: Population
allele count: 6
allele frequency: 1.463414634146342e-2
allele num: 410
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

QD
type: SiteQuality
SIO_000300: 1.417e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.16e-2

DP
type: SiteQuality
SIO_000300: 3.88965e5

VQSLOD
type: SiteQuality
SIO_000300: 5.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

GenotypeQuality
all individuals: 105
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32098
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GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1250
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5055
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.267748478701826e-4
allele num: 7888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2656
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.0855e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.859999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.086e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.8e-2

FS
type: SiteQuality
SIO_000300: 1.4115e1

QD
type: SiteQuality
SIO_000300: 1.519e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.9e-2

GenotypeQuality
all individuals: 784
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1194
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1284
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2662
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7896
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

VQSLOD
type: SiteQuality
SIO_000300: -1.832e0

QD
type: SiteQuality
SIO_000300: 8.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.75e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.231e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

DP
type: SiteQuality
SIO_000300: 4.11224e5

GenotypeQuality
all individuals: 971
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 59
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5180
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1281
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

African
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allele count: 1
allele frequency: 3.753753753753754e-4
allele num: 2664
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.13362e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

FS
type: SiteQuality
SIO_000300: 3.358e0

QD
type: SiteQuality
SIO_000300: 1.297e1

VQSLOD
type: SiteQuality
SIO_000300: 5.74e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.73e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2702
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7926
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 438
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.02e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.197e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.449e1

VQSLOD
type: SiteQuality
SIO_000300: -1.739e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.41e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.55e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2708
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7932
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.151543067710732e-4
allele num: 8684
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.865e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

FS
type: SiteQuality
SIO_000300: 1.221e0

DP
type: SiteQuality
SIO_000300: 4.36156e5

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -6.33e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.65e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.819e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2746
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.412429378531073e-3
allele num: 708
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8804
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7932
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e0

QD
type: SiteQuality
SIO_000300: 8.17e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.24e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

DP
type: SiteQuality
SIO_000300: 4.42291e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.32e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 452
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2748
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.124606387764283e-4
allele num: 8892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7936
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.59e-1

QD
type: SiteQuality
SIO_000300: 8.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.26e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.718e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.59e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.79e-1

MQ
type: SiteQuality
SIO_000300: 5.682e1

DP
type: SiteQuality
SIO_000300: 4.45882e5

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 169
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2764
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.781194857574994e-4
allele num: 7934
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8926
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.0e-3

FS
type: SiteQuality
SIO_000300: 5.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.25e-2

QD
type: SiteQuality
SIO_000300: 5.54e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.268e0

MQRankSum
type: SiteQuality
SIO_000300: 3.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.046e0

DP
type: SiteQuality
SIO_000300: 4.45711e5

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

East Asian
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allele frequency: 1.445086705202312e-3
allele num: 692
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8766
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7936
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

FS
type: SiteQuality
SIO_000300: 1.922e0

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 4.89e-1

VQSLOD
type: SiteQuality
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DP
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -6.710000000000001e-2

MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 2732
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8748
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.445086705202312e-3
allele num: 692
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7932
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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QD
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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DP
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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South Asian
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allele num: 7934
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 8696
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.3e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
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FS
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ClippingRankSum
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MQ
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ReadPosRankSum
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QD
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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East Asian
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South Asian
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African
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allele frequency: 7.342143906020558e-4
allele num: 2724
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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QD
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VQSLOD
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BaseQRankSum
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FS
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DP
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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African
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East Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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ClippingRankSum
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BaseQRankSum
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MQ
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MQRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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DP
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VQSLOD
type: SiteQuality
SIO_000300: -1.974e0

QD
type: SiteQuality
SIO_000300: 1.119e1

GenotypeQuality
all individuals: 63
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1268
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31420
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1065
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1221
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 7.468259895444362e-4
allele num: 2678
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 1.010611419909045e-3
allele num: 7916
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.91994e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

FS
type: SiteQuality
SIO_000300: 1.767e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.25e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.061e0

QD
type: SiteQuality
SIO_000300: 1.146e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.570000000000001e-1

GenotypeQuality
all individuals: 536
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1264
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 164
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4997
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2684
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 386
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.791708796764409e-4
allele num: 7912
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.696e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.25e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.16e-1

FS
type: SiteQuality
SIO_000300: 5.218e0

QD
type: SiteQuality
SIO_000300: 7.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

DP
type: SiteQuality
SIO_000300: 3.89034e5

GenotypeQuality
all individuals: 362
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 795
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4982
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1284
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2684
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8436
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7910
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.190000000000001e-2

FS
type: SiteQuality
SIO_000300: 2.169e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.924e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.172e0

DP
type: SiteQuality
SIO_000300: 3.86459e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

QD
type: SiteQuality
SIO_000300: 1.406e1

MQRankSum
type: SiteQuality
SIO_000300: -1.57e-1

GenotypeQuality
all individuals: 2409
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4932
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2670
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8408
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.84036e5

VQSLOD
type: SiteQuality
SIO_000300: -1.782e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.71e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.21e-2

GenotypeQuality
all individuals: 226
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30929
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7910
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2668
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.026e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.08e-2

DP
type: SiteQuality
SIO_000300: 3.82595e5

QD
type: SiteQuality
SIO_000300: 1.13e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

GenotypeQuality
all individuals: 362
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4736
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 795
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2648
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.178e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.84e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.56e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.75993e5

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 535
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29554
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 801
bin: 9.75e1
variant carriers: 5

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7902
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 1.893939393939394e-3
allele num: 2640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.629e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.55e-1

DP
type: SiteQuality
SIO_000300: 3.74376e5

MQ
type: SiteQuality
SIO_000300: 5.899e1

FS
type: SiteQuality
SIO_000300: 5.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.76e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.97e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.612e-1

GenotypeQuality
all individuals: 2151
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 997
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4689
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 801
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 222
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7902
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.787878787878788e-4
allele num: 2640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8268
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.45e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.65e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.612e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.31e-1

MQ
type: SiteQuality
SIO_000300: 5.899e1

DP
type: SiteQuality
SIO_000300: 3.74376e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.76e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.55e-1

QD
type: SiteQuality
SIO_000300: 1.629e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.97e-1

GenotypeQuality
all individuals: 5311
bin: 2.5e0
variant carriers: 7

GenotypeQuality
all individuals: 3793
bin: 6.25e1
variant carriers: 182

GenotypeQuality
all individuals: 976
bin: 6.75e1
variant carriers: 204

GenotypeQuality
all individuals: 23276
bin: 7.5e0
variant carriers: 614

GenotypeQuality
all individuals: 146
bin: 8.75e1
variant carriers: 65

GenotypeQuality
all individuals: 435
bin: 7.25e1
variant carriers: 146

GenotypeQuality
all individuals: 718
bin: 1.25e1
variant carriers: 352

GenotypeQuality
all individuals: 368
bin: 3.25e1
variant carriers: 243

African
type: Population
allele count: 790
allele frequency: 2.967693463561232e-1
allele num: 2662
num of homozygotes: 112

East Asian
type: Population
allele count: 98
allele frequency: 1.73758865248227e-1
allele num: 564
num of homozygotes: 12

European (Finnish)
type: Population
allele count: 9
allele frequency: 2.8125e-1
allele num: 32
num of homozygotes: 0

Latino
type: Population
allele count: 72
allele frequency: 1.904761904761905e-1
allele num: 378
num of homozygotes: 8

Other
type: Population
allele count: 35
allele frequency: 1.822916666666667e-1
allele num: 192
num of homozygotes: 4

South Asian
type: Population
allele count: 1188
allele frequency: 1.503036437246963e-1
allele num: 7904
num of homozygotes: 92

European (Non-Finnish)
type: Population
allele count: 1618
allele frequency: 1.946114986769305e-1
allele num: 8314
num of homozygotes: 163

BaseQRankSum
type: SiteQuality
SIO_000300: -4.48e-1

QD
type: SiteQuality
SIO_000300: 1.623e1

VQSLOD
type: SiteQuality
SIO_000300: 6.71e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.94e-2

DP
type: SiteQuality
SIO_000300: 4.51814e5

MQRankSum
type: SiteQuality
SIO_000300: 2.57e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.238236750866766e-4
allele num: 8076
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2582
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.87e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.061e-1

FS
type: SiteQuality
SIO_000300: 9.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.833e0

DP
type: SiteQuality
SIO_000300: 3.68976e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.06e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.945e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

MQ
type: SiteQuality
SIO_000300: 5.594e1

QD
type: SiteQuality
SIO_000300: 1.642e1

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 234
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.263902932254803e-4
allele num: 7912
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 354
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

VQSLOD
type: SiteQuality
SIO_000300: 9.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.46e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.19e0

FS
type: SiteQuality
SIO_000300: 9.44e-1

MQ
type: SiteQuality
SIO_000300: 5.589e1

QD
type: SiteQuality
SIO_000300: 1.664e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.16e-2

DP
type: SiteQuality
SIO_000300: 3.61603e5

GenotypeQuality
all individuals: 270
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1100
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 412
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2780
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 866
bin: 9.75e1
variant carriers: 30

GenotypeQuality
all individuals: 2417
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 171
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4391
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 28
allele frequency: 3.545201316789061e-3
allele num: 7898
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.534211860111505e-4
allele num: 7892
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.824858757062147e-3
allele num: 354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.51e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.555e-1

QD
type: SiteQuality
SIO_000300: 1.206e1

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.497e0

FS
type: SiteQuality
SIO_000300: 5.669999999999999e-1

DP
type: SiteQuality
SIO_000300: 3.62128e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e-1

GenotypeQuality
all individuals: 2780
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 866
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1100
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.266143327424664e-4
allele num: 7898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e-1

QD
type: SiteQuality
SIO_000300: 1.206e1

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

FS
type: SiteQuality
SIO_000300: 5.669999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.51e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.555e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.497e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.62128e5

GenotypeQuality
all individuals: 409
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2474
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 840
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.064573309698658e-4
allele num: 7898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.94e-1

DP
type: SiteQuality
SIO_000300: 3.61276e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.43e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.123e0

FS
type: SiteQuality
SIO_000300: 1.124e0

QD
type: SiteQuality
SIO_000300: 1.347e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.21e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

GenotypeQuality
all individuals: 172
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4342
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7816
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2494
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.267748478701826e-4
allele num: 7888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 352
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.217e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.23e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.04e-1

DP
type: SiteQuality
SIO_000300: 3.56885e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

FS
type: SiteQuality
SIO_000300: 1.075e0

QD
type: SiteQuality
SIO_000300: 1.841e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

GenotypeQuality
all individuals: 289
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27676
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 836
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 482
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.953125e-3
allele num: 512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7670
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 344
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.158e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.52095e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

QD
type: SiteQuality
SIO_000300: 1.68e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

MQ
type: SiteQuality
SIO_000300: 5.796e1

FS
type: SiteQuality
SIO_000300: 4.496e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.35e-2

GenotypeQuality
all individuals: 171
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4216
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1058
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 834
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7550
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 8.375209380234506e-4
allele num: 2388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.128e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.187e0

MQ
type: SiteQuality
SIO_000300: 5.837e1

MQRankSum
type: SiteQuality
SIO_000300: 1.55e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

DP
type: SiteQuality
SIO_000300: 3.50494e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.530000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.491e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

GenotypeQuality
all individuals: 49
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1406
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 188
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 173
bin: 8.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.251700680272109e-4
allele num: 7056
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7884
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 9.624639076034649e-4
allele num: 2078
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 332
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.0857e1

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-2

MQ
type: SiteQuality
SIO_000300: 5.92e1

VQSLOD
type: SiteQuality
SIO_000300: -2.135e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.829999999999999e-2

DP
type: SiteQuality
SIO_000300: 3.38873e5

QD
type: SiteQuality
SIO_000300: 2.94e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.826e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.85e-1

GenotypeQuality
all individuals: 5662
bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 219
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1214
bin: 2.25e1
variant carriers: 5

GenotypeQuality
all individuals: 140
bin: 3.75e1
variant carriers: 4

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 208
bin: 3.25e1
variant carriers: 4

GenotypeQuality
all individuals: 802
bin: 9.75e1
variant carriers: 58

GenotypeQuality
all individuals: 988
bin: 6.75e1
variant carriers: 3

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7876
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 1.162790697674419e-2
allele num: 172
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 65
allele frequency: 1.021049324536601e-2
allele num: 6366
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.184713375796179e-3
allele num: 314
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 1.777777777777778e-2
allele num: 450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

African
type: Population
allele count: 36
allele frequency: 2.031602708803612e-2
allele num: 1772
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.932e0

DP
type: SiteQuality
SIO_000300: 3.46884e5

MQ
type: SiteQuality
SIO_000300: 5.955e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.637e0

MQRankSum
type: SiteQuality
SIO_000300: 1.6e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.698e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.3e-2

FS
type: SiteQuality
SIO_000300: 1.11698e2

QD
type: SiteQuality
SIO_000300: 2.01e0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 961
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1064
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4202
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7868
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 330
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

QD
type: SiteQuality
SIO_000300: 1.455e1

MQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.56e-2

DP
type: SiteQuality
SIO_000300: 3.45984e5

VQSLOD
type: SiteQuality
SIO_000300: -1.814e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
all individuals: 361
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 125
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 960
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7856
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7870
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.35348e5

MQ
type: SiteQuality
SIO_000300: 5.395e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.52e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.19e0

QD
type: SiteQuality
SIO_000300: 1.137e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 18

GenotypeQuality
all individuals: 419
bin: 2.75e1
variant carriers: 71

GenotypeQuality
all individuals: 455
bin: 1.25e1
variant carriers: 48

GenotypeQuality
all individuals: 180
bin: 1.75e1
variant carriers: 26

GenotypeQuality
all individuals: 418
bin: 3.75e1
variant carriers: 7

GenotypeQuality
all individuals: 177
bin: 9.25e1
variant carriers: 25

GenotypeQuality
all individuals: 3259
bin: 6.25e1
variant carriers: 35

GenotypeQuality
all individuals: 336
bin: 7.25e1
variant carriers: 15

African
type: Population
allele count: 44
allele frequency: 1.762820512820513e-2
allele num: 2496
num of homozygotes: 0

Latino
type: Population
allele count: 22
allele frequency: 6.748466257668712e-2
allele num: 326
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 1
allele frequency: 6.25e-2
allele num: 16
num of homozygotes: 0

Other
type: Population
allele count: 14
allele frequency: 7.446808510638298e-2
allele num: 188
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 764
allele frequency: 9.752361501148839e-2
allele num: 7834
num of homozygotes: 34

East Asian
type: Population
allele count: 15
allele frequency: 3.177966101694915e-2
allele num: 472
num of homozygotes: 0

South Asian
type: Population
allele count: 620
allele frequency: 7.894066717596129e-2
allele num: 7854
num of homozygotes: 34

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.3e-2

FS
type: SiteQuality
SIO_000300: 7.9e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.99e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.52e0

QD
type: SiteQuality
SIO_000300: 1.648e1

DP
type: SiteQuality
SIO_000300: 3.27656e5

GenotypeQuality
all individuals: 363
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1083
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7670
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.555583950932788e-4
allele num: 7826
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.8e0

MQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.29e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.39e-2

QD
type: SiteQuality
SIO_000300: 1.213e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

DP
type: SiteQuality
SIO_000300: 3.08501e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.33e-1

GenotypeQuality
all individuals: 688
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1383
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1414
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1376
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9530
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16378
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.747640685075148e-4
allele num: 11444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 1.368e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

MQRankSum
type: SiteQuality
SIO_000300: -3.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.15e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.64e-1

QD
type: SiteQuality
SIO_000300: 1.565e1

DP
type: SiteQuality
SIO_000300: 2.024249e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.88e0

GenotypeQuality
all individuals: 802
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3058
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6983
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514921981517952e-5
allele num: 66010
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.059e1

MQRankSum
type: SiteQuality
SIO_000300: 5.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.28e0

VQSLOD
type: SiteQuality
SIO_000300: -9.343e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 2.581e0

DP
type: SiteQuality
SIO_000300: 2.049513e6

QD
type: SiteQuality
SIO_000300: 3.217e1

GenotypeQuality
all individuals: 260
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3942
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3076
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9562
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66036
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.092360180333861e-5
allele num: 16414
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.328e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.12e0

VQSLOD
type: SiteQuality
SIO_000300: -1.042e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.91e-1

QD
type: SiteQuality
SIO_000300: 1.099e1

DP
type: SiteQuality
SIO_000300: 2.052683e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.69e-1

GenotypeQuality
all individuals: 27123
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3977
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.026542780182198e-5
allele num: 66082
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.699321047526673e-5
allele num: 10310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.961e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.5e-2

FS
type: SiteQuality
SIO_000300: 1.154e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.08e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.132e1

DP
type: SiteQuality
SIO_000300: 2.059432e6

GenotypeQuality
all individuals: 491
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3052
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3105
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9589
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 1874
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 7.2992700729927e-4
allele num: 16440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66106
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.846e1

MQRankSum
type: SiteQuality
SIO_000300: 5.35e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.13e0

MQ
type: SiteQuality
SIO_000300: 6.051e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 2.060888e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

GenotypeQuality
all individuals: 9584
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 201
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1880
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1461
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.090875867949811e-5
allele num: 16418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66106
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.92e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.469e0

VQSLOD
type: SiteQuality
SIO_000300: 1.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

DP
type: SiteQuality
SIO_000300: 2.063702e6

QD
type: SiteQuality
SIO_000300: 1.302e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.85e-1

GenotypeQuality
all individuals: 3173
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9608
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 435
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7186
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3131
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1903
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510893542441e-5
allele num: 66186
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.122e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.774e0

FS
type: SiteQuality
SIO_000300: 7.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.37e-1

QD
type: SiteQuality
SIO_000300: 6.16e0

MQRankSum
type: SiteQuality
SIO_000300: 9.62e-1

DP
type: SiteQuality
SIO_000300: 2.072371e6

GenotypeQuality
all individuals: 168
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1903
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3173
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4103
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.021787084881999e-5
allele num: 66186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.16e0

FS
type: SiteQuality
SIO_000300: 7.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.62e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.122e-1

DP
type: SiteQuality
SIO_000300: 2.072371e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.774e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.29e-1

GenotypeQuality
all individuals: 3153
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1912
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9613
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 190
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.020965500573983e-5
allele num: 66204
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.074332e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 2.308e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.647e0

MQRankSum
type: SiteQuality
SIO_000300: 5.47e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.577e0

FS
type: SiteQuality
SIO_000300: 8.747e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.54e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-2

GenotypeQuality
all individuals: 1341
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2483
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.5e0
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GenotypeQuality
all individuals: 302
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 885
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39324
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.213150551983501e-4
allele num: 16486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.68e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.53e0

QD
type: SiteQuality
SIO_000300: 1.802e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.11e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e-1

DP
type: SiteQuality
SIO_000300: 2.959959e6

MQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

MQ
type: SiteQuality
SIO_000300: 5.971e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-1

GenotypeQuality
all individuals: 49
bin: 1.25e1
variant carriers: 41

GenotypeQuality
all individuals: 54
bin: 2.5e0
variant carriers: 27

GenotypeQuality
all individuals: 1080
bin: 8.25e1
variant carriers: 620

GenotypeQuality
all individuals: 885
bin: 7.25e1
variant carriers: 298

GenotypeQuality
all individuals: 236
bin: 4.75e1
variant carriers: 162

GenotypeQuality
all individuals: 1341
bin: 7.75e1
variant carriers: 635

GenotypeQuality
all individuals: 126
bin: 3.25e1
variant carriers: 76

GenotypeQuality
all individuals: 191
bin: 4.25e1
variant carriers: 147

GenotypeQuality
all individuals: 1073
bin: 9.25e1
variant carriers: 748

East Asian
type: Population
allele count: 3225
allele frequency: 3.7439052704899e-1
allele num: 8614
num of homozygotes: 609

African
type: Population
allele count: 1562
allele frequency: 1.509470429068419e-1
allele num: 10348
num of homozygotes: 136

Other
type: Population
allele count: 450
allele frequency: 4.97787610619469e-1
allele num: 904
num of homozygotes: 115

Latino
type: Population
allele count: 6092
allele frequency: 5.299234516353514e-1
allele num: 11496
num of homozygotes: 1618

European (Finnish)
type: Population
allele count: 3824
allele frequency: 5.795695665353138e-1
allele num: 6598
num of homozygotes: 1119

South Asian
type: Population
allele count: 6336
allele frequency: 3.843260948683732e-1
allele num: 16486
num of homozygotes: 1277

European (Non-Finnish)
type: Population
allele count: 33505
allele frequency: 5.049584036653002e-1
allele num: 66352
num of homozygotes: 8449

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.11e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.53e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.68e-1

DP
type: SiteQuality
SIO_000300: 2.959959e6

QD
type: SiteQuality
SIO_000300: 1.802e1

GenotypeQuality
all individuals: 173
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1296
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
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variant carriers: 0

GenotypeQuality
all individuals: 7084
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5729
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518741267237713e-5
allele num: 65844
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16380
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.799e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.158e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.66e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-2

DP
type: SiteQuality
SIO_000300: 1.923709e6

QD
type: SiteQuality
SIO_000300: 8.93e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e-1

GenotypeQuality
all individuals: 1901
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 862
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37697
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2090
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
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variant carriers: 0

GenotypeQuality
all individuals: 5720
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.756567425569177e-5
allele num: 11420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.911784e6

FS
type: SiteQuality
SIO_000300: 8.432e0

MQRankSum
type: SiteQuality
SIO_000300: -3.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

VQSLOD
type: SiteQuality
SIO_000300: -1.313e0

QD
type: SiteQuality
SIO_000300: 1.966e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.028e0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1305
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 550
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variant carriers: 0

GenotypeQuality
all individuals: 201
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variant carriers: 0

GenotypeQuality
all individuals: 5712
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 112
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.055581018730712e-5
allele num: 65454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16344
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.86e-1

DP
type: SiteQuality
SIO_000300: 1.906996e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.48e-1

QD
type: SiteQuality
SIO_000300: 5.0e0

FS
type: SiteQuality
SIO_000300: 1.7366e1

VQSLOD
type: SiteQuality
SIO_000300: -2.642e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.413e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 131
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37065
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1271
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variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1798
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variant carriers: 0

GenotypeQuality
all individuals: 856
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variant carriers: 0

GenotypeQuality
all individuals: 1982
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16318
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.75800156128025e-5
allele num: 10248
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65236
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.13e-1

QD
type: SiteQuality
SIO_000300: 1.222e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

MQRankSum
type: SiteQuality
SIO_000300: -2.59e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.897539e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.925e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.94e-1

GenotypeQuality
all individuals: 642
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4139
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 845
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variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 1684
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variant carriers: 0

GenotypeQuality
all individuals: 528
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variant carriers: 0

GenotypeQuality
all individuals: 582
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variant carriers: 0

GenotypeQuality
all individuals: 1869
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variant carriers: 0

GenotypeQuality
all individuals: 6264
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variant carriers: 0

GenotypeQuality
all individuals: 5689
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8438
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16212
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10160
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.865248226950355e-5
allele num: 11280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64344
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 1.749e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.508e0

MQRankSum
type: SiteQuality
SIO_000300: -1.214e0

DP
type: SiteQuality
SIO_000300: 1.850575e6

VQSLOD
type: SiteQuality
SIO_000300: -1.874e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.054e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 7.01e0

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1203
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
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variant carriers: 0

GenotypeQuality
all individuals: 48
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GenotypeQuality
all individuals: 1652
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GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 411
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variant carriers: 0

GenotypeQuality
all individuals: 842
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variant carriers: 0

GenotypeQuality
all individuals: 1263
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variant carriers: 0

GenotypeQuality
all individuals: 417
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GenotypeQuality
all individuals: 33641
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64218
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.859988168014199e-5
allele num: 10142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.63e0

MQRankSum
type: SiteQuality
SIO_000300: -4.31e-1

QD
type: SiteQuality
SIO_000300: 8.029999999999999e0

FS
type: SiteQuality
SIO_000300: 1.387e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.544e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.19e0

DP
type: SiteQuality
SIO_000300: 1.844968e6

VQSLOD
type: SiteQuality
SIO_000300: -1.775e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

GenotypeQuality
all individuals: 74
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variant carriers: 0

GenotypeQuality
all individuals: 5679
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 631
bin: 4.25e1
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GenotypeQuality
all individuals: 821
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GenotypeQuality
all individuals: 24349
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GenotypeQuality
all individuals: 495
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GenotypeQuality
all individuals: 497
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GenotypeQuality
all individuals: 99
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variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.996805111821086e-4
allele num: 10016
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10930
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6410
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15994
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8162
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.89e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.69e0

QD
type: SiteQuality
SIO_000300: 1.232e1

DP
type: SiteQuality
SIO_000300: 1.680734e6

GenotypeQuality
all individuals: 1083
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1171
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6330
bin: 3.25e1
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GenotypeQuality
all individuals: 1148
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3567
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8072
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.565925461948011e-4
allele num: 6386
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.005833836250251e-4
allele num: 9942
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61746
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10810
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15916
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.374e1

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

DP
type: SiteQuality
SIO_000300: 1.589208e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.513e0

FS
type: SiteQuality
SIO_000300: 4.69e0

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1450
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5046
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4137
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1084
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61640
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8062
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.258811681772407e-4
allele num: 15888
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10820
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.027386226339106e-4
allele num: 9932
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6386
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

FS
type: SiteQuality
SIO_000300: 2.314e0

DP
type: SiteQuality
SIO_000300: 1.569181e6

MQRankSum
type: SiteQuality
SIO_000300: 7.57e-1

QD
type: SiteQuality
SIO_000300: 1.669e1

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

GenotypeQuality
all individuals: 1088
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7373
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12042
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 912
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.642845408247084e-5
allele num: 60870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7992
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10696
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15794
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.527843e6

VQSLOD
type: SiteQuality
SIO_000300: -2.504e-1

QD
type: SiteQuality
SIO_000300: 2.451e1

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.135e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 5672
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1005
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1336
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9404
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7682
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1348
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6991
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7846
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.388143605468251e-5
allele num: 15654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.675547066117087e-5
allele num: 59682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.069367710251688e-4
allele num: 9774
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6282
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.498480243161094e-5
allele num: 10528
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.86e-1

DP
type: SiteQuality
SIO_000300: 1.49044e6

FS
type: SiteQuality
SIO_000300: 1.267e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.96e0

QD
type: SiteQuality
SIO_000300: 1.23e1

VQSLOD
type: SiteQuality
SIO_000300: 2.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.53e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 6982
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4470
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1335
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9093
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 993
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variant carriers: 0

GenotypeQuality
all individuals: 489
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variant carriers: 0

GenotypeQuality
all individuals: 1193
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.507510933637573e-5
allele num: 10518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9762
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.397715821296607e-5
allele num: 59540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6294
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.52e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.51e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.244e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.655e0

DP
type: SiteQuality
SIO_000300: 1.488856e6

QD
type: SiteQuality
SIO_000300: 8.369999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 4690
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8489
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2612
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5859
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5665
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1717
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3105
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58856
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.030927835051546e-4
allele num: 9700
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7714
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.446e1

MQ
type: SiteQuality
SIO_000300: 5.481e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.006e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.17e-1

DP
type: SiteQuality
SIO_000300: 1.475311e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.08e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.62e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.24e0

GenotypeQuality
all individuals: 159
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 506
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variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508295625942685e-5
allele num: 66300
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15160
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.08e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.253e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.978e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.99e-1

FS
type: SiteQuality
SIO_000300: 1.587e0

MQRankSum
type: SiteQuality
SIO_000300: -3.18e-1

DP
type: SiteQuality
SIO_000300: 5.343713e6

QD
type: SiteQuality
SIO_000300: 1.168e1