1-27105930-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27105930
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27105931
    reference: chr 1
allele count: 2
allele frequency: 1.649538953862396e-5
allele num: 121246
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*531dupG
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2237dupG
  hgvsp: ENSP00000390317.2:p.Asp747GlyfsTer4
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5548dupG
  hgvsp: ENSP00000320485.7:p.Asp1850GlyfsTer4
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*480dupG
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.532dupG
  hgvsp: ENSP00000442437.1:p.Asp178GlyfsTer4
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.4897dupG
  hgvsp: ENSP00000387636.2:p.Asp1633GlyfsTer4
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4399dupG
  hgvsp: ENSP00000363267.2:p.Asp1467GlyfsTer4
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 6237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6721
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3873
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3917
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6182
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2216
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2869
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10826
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp1850GlyfsTer4
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS

1-27105931-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27105931
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27105931
    reference: chr 1
allele count: 1
allele frequency: 8.247558722618106e-6
allele num: 121248
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.4891G>C
  hgvsp: ENSP00000387636.2:p.Gly1631Arg
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*525G>C
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4393G>C
  hgvsp: ENSP00000363267.2:p.Gly1465Arg
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.526G>C
  hgvsp: ENSP00000442437.1:p.Gly176Arg
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2231G>C
  hgvsp: ENSP00000390317.2:p.Gly745Arg
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*474G>C
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5542G>C
  hgvsp: ENSP00000320485.7:p.Gly1848Arg
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3109
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3916
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3874
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4265
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6717
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6182
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2716
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly1848Arg
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD

1-27105931-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27105931
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27105931
    reference: chr 1
allele count: 7
allele frequency: 5.773291105832674e-5
allele num: 121248
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4393G>T
  hgvsp: ENSP00000363267.2:p.Gly1465Trp
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*474G>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.526G>T
  hgvsp: ENSP00000442437.1:p.Gly176Trp
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.4891G>T
  hgvsp: ENSP00000387636.2:p.Gly1631Trp
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5542G>T
  hgvsp: ENSP00000320485.7:p.Gly1848Trp
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2231G>T
  hgvsp: ENSP00000390317.2:p.Gly745Trp
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*525G>T
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6182
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4265
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6717
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3109
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3916
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3874
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2216
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly1848Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS

1-27105933-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27105933
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27105933
    reference: chr 1
allele count: 2
allele frequency: 1.648994937585542e-5
allele num: 121286
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.4893G>A
  hgvsp: ENST00000457599.2:c.4893G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2233G>A
  hgvsp: ENST00000430799.2:c.2233G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4395G>A
  hgvsp: ENST00000374152.2:c.4395G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*527G>A
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5544G>A
  hgvsp: ENST00000324856.7:c.5544G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.528G>A
  hgvsp: ENST00000540690.1:c.528G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*476G>A
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5283
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6489
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6180
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6717
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6239
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2873
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2167
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2220
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33365
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly1848Gly
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-27105938-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27105938
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27105938
    reference: chr 1
allele count: 3
allele frequency: 2.474104374216534e-5
allele num: 121256
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4400A>G
  hgvsp: ENSP00000363267.2:p.Asp1467Gly
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5549A>G
  hgvsp: ENSP00000320485.7:p.Asp1850Gly
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*532A>G
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*481A>G
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.4898A>G
  hgvsp: ENSP00000387636.2:p.Asp1633Gly
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2238A>G
  hgvsp: ENSP00000390317.2:p.Asp747Gly
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.533A>G
  hgvsp: ENSP00000442437.1:p.Asp178Gly
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3910
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6145
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6716
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5333
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3353
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2715
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10833
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp1850Gly
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ

1-27105941-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27105941
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27105941
    reference: chr 1
allele count: 1
allele frequency: 8.245654540057389e-6
allele num: 121276
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.4901C>T
  hgvsp: ENSP00000387636.2:p.Thr1634Ile
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.536C>T
  hgvsp: ENSP00000442437.1:p.Thr179Ile
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2241C>T
  hgvsp: ENSP00000390317.2:p.Thr748Ile
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*484C>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5552C>T
  hgvsp: ENSP00000320485.7:p.Thr1851Ile
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4403C>T
  hgvsp: ENSP00000363267.2:p.Thr1468Ile
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*535C>T
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6717
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6487
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3902
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3114
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4307
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2870
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33364
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2222
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10923
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr1851Ile
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

1-27105961-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27105961
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27105961
    reference: chr 1
allele count: 1
allele frequency: 8.245926512302922e-6
allele num: 121272
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.556C>G
  hgvsp: ENSP00000442437.1:p.His186Asp
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.4921C>G
  hgvsp: ENSP00000387636.2:p.His1641Asp
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*555C>G
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2261C>G
  hgvsp: ENSP00000390317.2:p.His755Asp
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*504C>G
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5572C>G
  hgvsp: ENSP00000320485.7:p.His1858Asp
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4423C>G
  hgvsp: ENSP00000363267.2:p.His1475Asp
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4299
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3901
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3369
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2870
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2699
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2162
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.His1858Asp
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

1-27105961-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27105961
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27105961
    reference: chr 1
allele count: 1
allele frequency: 8.245926512302922e-6
allele num: 121272
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5572C>T
  hgvsp: ENSP00000320485.7:p.His1858Tyr
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.4921C>T
  hgvsp: ENSP00000387636.2:p.His1641Tyr
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4423C>T
  hgvsp: ENSP00000363267.2:p.His1475Tyr
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*504C>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.556C>T
  hgvsp: ENSP00000442437.1:p.His186Tyr
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2261C>T
  hgvsp: ENSP00000390317.2:p.His755Tyr
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*555C>T
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4299
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3901
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6241
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2699
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.75e1
  variant carriers: 0
hgvs: p.His1858Tyr
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD

1-27105966-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27105966
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27105966
    reference: chr 1
allele count: 6
allele frequency: 4.947719101494211e-5
allele num: 121268
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.561C>T
  hgvsp: ENST00000540690.1:c.561C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4428C>T
  hgvsp: ENST00000374152.2:c.4428C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.4926C>T
  hgvsp: ENST00000457599.2:c.4926C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5577C>T
  hgvsp: ENST00000324856.7:c.5577C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*509C>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*560C>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2266C>T
  hgvsp: ENST00000430799.2:c.2266C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3104
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3899
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6131
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6721
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6491
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2702
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10852
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3366
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Phe1859Phe
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-27105967-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27105967
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27105967
    reference: chr 1
allele count: 1
allele frequency: 8.246062505153789e-6
allele num: 121270
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*561G>A
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.562G>A
  hgvsp: ENSP00000442437.1:p.Glu188Lys
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.4927G>A
  hgvsp: ENSP00000387636.2:p.Glu1643Lys
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4429G>A
  hgvsp: ENSP00000363267.2:p.Glu1477Lys
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2267G>A
  hgvsp: ENSP00000390317.2:p.Glu757Lys
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*510G>A
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5578G>A
  hgvsp: ENSP00000320485.7:p.Glu1860Lys
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3901
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6147
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3107
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10882
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2715
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33360
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu1860Lys
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD

1-27105975-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27105975
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27105975
    reference: chr 1
allele count: 2
allele frequency: 1.649375711293276e-5
allele num: 121258
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.570G>A
  hgvsp: ENST00000540690.1:c.570G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4437G>A
  hgvsp: ENST00000374152.2:c.4437G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5586G>A
  hgvsp: ENST00000324856.7:c.5586G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.4935G>A
  hgvsp: ENST00000457599.2:c.4935G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*518G>A
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*569G>A
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2275G>A
  hgvsp: ENST00000430799.2:c.2275G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4283
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3895
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6123
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2711
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2696
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Lys1862Lys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

1-27105981-G-GGTA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27105981
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27105984
    reference: chr 1
allele count: 1
allele frequency: 8.247694769311978e-6
allele num: 121246
alternate allele: GGTA
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.576_577insGTA
  hgvsp: ENSP00000442437.1:p.Glu192_Leu193insVal
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2281_2282insGTA
  hgvsp: ENSP00000390317.2:p.Glu761_Leu762insVal
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5592_5593insGTA
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.4941_4942insGTA
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4443_4444insGTA
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*575_*576insGTA
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*524_*525insGTA
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 3081
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4265
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6094
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2869
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2710
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33358
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2214
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu1864_Leu1865insVal
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

1-27105983-T-TCATCA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27105983
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27105988
    reference: chr 1
allele count: 1
allele frequency: 8.247694769311978e-6
allele num: 121246
alternate allele: TCATCA
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5594_5595insCATCA
  hgvsp: ENSP00000320485.7:p.Leu1866IlefsTer19
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.4943_4944insCATCA
  hgvsp: ENSP00000387636.2:p.Leu1649IlefsTer19
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2283_2284insCATCA
  hgvsp: ENSP00000390317.2:p.Leu763IlefsTer19
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*526_*527insCATCA
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4445_4446insCATCA
  hgvsp: ENSP00000363267.2:p.Leu1483IlefsTer19
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*577_*578insCATCA
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.578_579insCATCA
  hgvsp: ENSP00000442437.1:p.Leu194IlefsTer19
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6080
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3072
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10744
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2712
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3361
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2210
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu1866IlefsTer19
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

1-27105985-C-CTTAGAAGAACATTTGAAGTTGAGGAGTGACACCATGCTGGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27105985
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106026
    reference: chr 1
allele count: 1
allele frequency: 8.248783304462591e-6
allele num: 121230
alternate allele: CTTAGAAGAACATTTGAAGTTGAGGAGTGACACCATGCTGGA
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsp: ENSP00000320485.7:p.Pro1867ArgfsTer9
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsp: ENSP00000390317.2:p.Pro764ArgfsTer9
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsp: ENSP00000442437.1:p.Pro195ArgfsTer9
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsp: ENSP00000387636.2:p.Pro1650ArgfsTer9
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsp: ENSP00000363267.2:p.Pro1484ArgfsTer9
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: stop gained
filter: VQSRTrancheINDEL99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3072
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3894
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6046
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3349
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2688
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2161
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2712
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro1867ArgfsTer9
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

1-27105992-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27105992
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27105992
    reference: chr 1
allele count: 2
allele frequency: 1.650410126916539e-5
allele num: 121182
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4454C>G
  hgvsp: ENSP00000363267.2:p.Ser1485Cys
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*586C>G
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5603C>G
  hgvsp: ENSP00000320485.7:p.Ser1868Cys
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2292C>G
  hgvsp: ENSP00000390317.2:p.Ser765Cys
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.587C>G
  hgvsp: ENSP00000442437.1:p.Ser196Cys
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.4952C>G
  hgvsp: ENSP00000387636.2:p.Ser1651Cys
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*535C>G
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5327
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4099
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6011
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3895
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2160
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2688
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2868
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser1868Cys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum

1-27105994-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27105994
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27105994
    reference: chr 1
allele count: 2
allele frequency: 1.650437365901964e-5
allele num: 121180
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*588C>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4456C>T
  hgvsp: ENSP00000363267.2:p.Arg1486Trp
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.589C>T
  hgvsp: ENSP00000442437.1:p.Arg197Trp
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.4954C>T
  hgvsp: ENSP00000387636.2:p.Arg1652Trp
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5605C>T
  hgvsp: ENSP00000320485.7:p.Arg1869Trp
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2294C>T
  hgvsp: ENSP00000390317.2:p.Arg766Trp
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*537C>T
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6243
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4074
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3048
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5327
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6011
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10428
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2686
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2708
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3310
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg1869Trp
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

1-27105995-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27105995
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27105995
    reference: chr 1
allele count: 2
allele frequency: 1.650437365901964e-5
allele num: 121180
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*538G>A
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5606G>A
  hgvsp: ENSP00000320485.7:p.Arg1869Gln
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*589G>A
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.590G>A
  hgvsp: ENSP00000442437.1:p.Arg197Gln
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4457G>A
  hgvsp: ENSP00000363267.2:p.Arg1486Gln
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2295G>A
  hgvsp: ENSP00000390317.2:p.Arg766Gln
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.4955G>A
  hgvsp: ENSP00000387636.2:p.Arg1652Gln
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4090
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6014
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5283
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5327
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10507
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3315
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg1869Gln
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP

1-27106002-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106002
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106002
    reference: chr 1
allele count: 9
allele frequency: 7.429543165645793e-5
allele num: 121138
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2302C>T
  hgvsp: ENST00000430799.2:c.2302C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4464C>T
  hgvsp: ENST00000374152.2:c.4464C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.4962C>T
  hgvsp: ENST00000457599.2:c.4962C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*545C>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.597C>T
  hgvsp: ENST00000540690.1:c.597C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5613C>T
  hgvsp: ENST00000324856.7:c.5613C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*596C>T
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3885
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3002
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5990
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6720
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2868
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 2.25e1
  variant carriers: 0
hgvs: p.His1871His
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

1-27106003-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106003
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106003
    reference: chr 1
allele count: 4
allele frequency: 3.302237265747544e-5
allele num: 121130
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*597G>A
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.598G>A
  hgvsp: ENSP00000442437.1:p.Ala200Thr
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4465G>A
  hgvsp: ENSP00000363267.2:p.Ala1489Thr
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2303G>A
  hgvsp: ENSP00000390317.2:p.Ala769Thr
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*546G>A
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5614G>A
  hgvsp: ENSP00000320485.7:p.Ala1872Thr
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.4963G>A
  hgvsp: ENSP00000387636.2:p.Ala1655Thr
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3933
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3883
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6243
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2160
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33359
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2680
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2708
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala1872Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

1-27106004-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106004
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106004
    reference: chr 1
allele count: 15
allele frequency: 1.238502567828657e-4
allele num: 121114
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4466C>T
  hgvsp: ENSP00000363267.2:p.Ala1489Val
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.599C>T
  hgvsp: ENSP00000442437.1:p.Ala200Val
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2304C>T
  hgvsp: ENSP00000390317.2:p.Ala769Val
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5615C>T
  hgvsp: ENSP00000320485.7:p.Ala1872Val
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*598C>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.4964C>T
  hgvsp: ENSP00000387636.2:p.Ala1655Val
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*547C>T
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5984
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6717
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5323
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6492
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2867
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2212
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala1872Val
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

1-27106007-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106007
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106007
    reference: chr 1
allele count: 1
allele frequency: 8.255184255712587e-6
allele num: 121136
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5618C>T
  hgvsp: ENSP00000320485.7:p.Pro1873Leu
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.4967C>T
  hgvsp: ENSP00000387636.2:p.Pro1656Leu
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4469C>T
  hgvsp: ENSP00000363267.2:p.Pro1490Leu
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*601C>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2307C>T
  hgvsp: ENSP00000390317.2:p.Pro770Leu
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.602C>T
  hgvsp: ENSP00000442437.1:p.Pro201Leu
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*550C>T
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3911
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5991
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3881
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2210
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro1873Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-27106014-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106014
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106014
    reference: chr 1
allele count: 5
allele frequency: 4.130729321569016e-5
allele num: 121044
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4476A>C
  hgvsp: ENST00000374152.2:c.4476A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*608A>C
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.609A>C
  hgvsp: ENST00000540690.1:c.609A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5625A>C
  hgvsp: ENST00000324856.7:c.5625A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*557A>C
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2314A>C
  hgvsp: ENST00000430799.2:c.2314A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.4974A>C
  hgvsp: ENST00000457599.2:c.4974A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5322
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3886
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5993
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3879
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2986
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10098
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33351
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro1875Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

1-27106016-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106016
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106016
    reference: chr 1
allele count: 1
allele frequency: 8.261322141995606e-6
allele num: 121046
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.4976C>T
  hgvsp: ENSP00000387636.2:p.Pro1659Leu
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2316C>T
  hgvsp: ENSP00000390317.2:p.Pro773Leu
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.611C>T
  hgvsp: ENSP00000442437.1:p.Pro204Leu
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4478C>T
  hgvsp: ENSP00000363267.2:p.Pro1493Leu
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*559C>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*610C>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5627C>T
  hgvsp: ENSP00000320485.7:p.Pro1876Leu
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6722
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3879
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3840
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5323
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3007
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5986
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2871
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2683
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro1876Leu
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum

1-27106017-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106017
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106017
    reference: chr 1
allele count: 8
allele frequency: 6.608730132505039e-5
allele num: 121052
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4479A>G
  hgvsp: ENST00000374152.2:c.4479A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.4977A>G
  hgvsp: ENST00000457599.2:c.4977A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2317A>G
  hgvsp: ENST00000430799.2:c.2317A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*560A>G
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.612A>G
  hgvsp: ENST00000540690.1:c.612A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5628A>G
  hgvsp: ENST00000324856.7:c.5628A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*611A>G
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6718
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5319
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5993
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3303
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10059
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33348
  bin: 9.75e1
  variant carriers: 8
hgvs: p.Pro1876Pro
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

1-27106018-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106018
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106018
    reference: chr 1
allele count: 1
allele frequency: 8.261185645363822e-6
allele num: 121048
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*561G>C
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5629G>C
  hgvsp: ENSP00000320485.7:p.Ala1877Pro
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*612G>C
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4480G>C
  hgvsp: ENSP00000363267.2:p.Ala1494Pro
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2318G>C
  hgvsp: ENSP00000390317.2:p.Ala774Pro
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.4978G>C
  hgvsp: ENSP00000387636.2:p.Ala1660Pro
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.613G>C
  hgvsp: ENSP00000442437.1:p.Ala205Pro
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6723
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5321
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10078
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2871
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3302
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala1877Pro
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-27106022-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106022
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106022
    reference: chr 1
allele count: 1
allele frequency: 8.259002312520648e-6
allele num: 121080
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*565C>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4484C>T
  hgvsp: ENSP00000363267.2:p.Pro1495Leu
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5633C>T
  hgvsp: ENSP00000320485.7:p.Pro1878Leu
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*616C>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.4982C>T
  hgvsp: ENSP00000387636.2:p.Pro1661Leu
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2322C>T
  hgvsp: ENSP00000390317.2:p.Pro775Leu
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.617C>T
  hgvsp: ENSP00000442437.1:p.Pro206Leu
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5319
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6720
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5990
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2989
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3872
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10165
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3304
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2686
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro1878Leu
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP

1-27106024-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106024
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106024
    reference: chr 1
allele count: 5
allele frequency: 4.130319851969337e-5
allele num: 121056
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.619C>T
  hgvsp: ENSP00000442437.1:p.Arg207Trp
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2324C>T
  hgvsp: ENSP00000390317.2:p.Arg776Trp
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*618C>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4486C>T
  hgvsp: ENSP00000363267.2:p.Arg1496Trp
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5635C>T
  hgvsp: ENSP00000320485.7:p.Arg1879Trp
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*567C>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.4984C>T
  hgvsp: ENSP00000387636.2:p.Arg1662Trp
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5283
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5318
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5994
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3886
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2996
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6243
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10098
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2207
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33347
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3296
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg1879Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ

1-27106025-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106025
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106025
    reference: chr 1
allele count: 10
allele frequency: 8.259684480052862e-5
allele num: 121070
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*568G>A
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4487G>A
  hgvsp: ENSP00000363267.2:p.Arg1496Gln
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5636G>A
  hgvsp: ENSP00000320485.7:p.Arg1879Gln
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.620G>A
  hgvsp: ENSP00000442437.1:p.Arg207Gln
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2325G>A
  hgvsp: ENSP00000390317.2:p.Arg776Gln
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*619G>A
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.4985G>A
  hgvsp: ENSP00000387636.2:p.Arg1662Gln
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2996
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5319
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6243
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5993
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6721
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2870
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10133
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33347
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg1879Gln
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum

1-27106026-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106026
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106026
    reference: chr 1
allele count: 2
allele frequency: 1.65188231990353e-5
allele num: 121074
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.621G>A
  hgvsp: ENST00000540690.1:c.621G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.4986G>A
  hgvsp: ENST00000457599.2:c.4986G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4488G>A
  hgvsp: ENST00000374152.2:c.4488G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*620G>A
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5637G>A
  hgvsp: ENST00000324856.7:c.5637G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2326G>A
  hgvsp: ENST00000430799.2:c.2326G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*569G>A
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5995
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6244
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5318
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2159
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10183
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg1879Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-27106031-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106031
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106031
    reference: chr 1
allele count: 1
allele frequency: 8.257092842751923e-6
allele num: 121108
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2331A>G
  hgvsp: ENSP00000390317.2:p.His778Arg
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4493A>G
  hgvsp: ENSP00000363267.2:p.His1498Arg
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.4991A>G
  hgvsp: ENSP00000387636.2:p.His1664Arg
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5642A>G
  hgvsp: ENSP00000320485.7:p.His1881Arg
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*625A>G
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.626A>G
  hgvsp: ENSP00000442437.1:p.His209Arg
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*574A>G
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6244
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5318
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3004
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3881
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33344
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2685
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2158
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2215
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2716
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10328
  bin: 6.25e1
  variant carriers: 0
hgvs: p.His1881Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

1-27106036-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106036
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106036
    reference: chr 1
allele count: 2
allele frequency: 1.65144584083365e-5
allele num: 121106
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4498A>T
  hgvsp: ENSP00000363267.2:p.Thr1500Ser
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.631A>T
  hgvsp: ENSP00000442437.1:p.Thr211Ser
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*630A>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5647A>T
  hgvsp: ENSP00000320485.7:p.Thr1883Ser
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2336A>T
  hgvsp: ENSP00000390317.2:p.Thr780Ser
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.4996A>T
  hgvsp: ENSP00000387636.2:p.Thr1666Ser
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*579A>T
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3881
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6720
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5318
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6054
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2688
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2208
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10293
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr1883Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

1-27106049-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106049
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106049
    reference: chr 1
allele count: 1
allele frequency: 8.256274768824306e-6
allele num: 121120
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4511G>T
  hgvsp: ENSP00000363267.2:p.Gly1504Val
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.644G>T
  hgvsp: ENSP00000442437.1:p.Gly215Val
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*643G>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*592G>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5660G>T
  hgvsp: ENSP00000320485.7:p.Gly1887Val
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5009G>T
  hgvsp: ENSP00000387636.2:p.Gly1670Val
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2349G>T
  hgvsp: ENSP00000390317.2:p.Gly784Val
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5321
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3885
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6142
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10466
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2871
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2211
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2689
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly1887Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum

1-27106055-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106055
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106055
    reference: chr 1
allele count: 1
allele frequency: 8.256547442121603e-6
allele num: 121116
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*649C>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4517C>T
  hgvsp: ENSP00000363267.2:p.Pro1506Leu
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*598C>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5015C>T
  hgvsp: ENSP00000387636.2:p.Pro1672Leu
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.650C>T
  hgvsp: ENSP00000442437.1:p.Pro217Leu
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5666C>T
  hgvsp: ENSP00000320485.7:p.Pro1889Leu
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2355C>T
  hgvsp: ENSP00000390317.2:p.Pro786Leu
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3005
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6720
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6149
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10378
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3333
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2871
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2208
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro1889Leu
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

1-27106068-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106068
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106068
    reference: chr 1
allele count: 2
allele frequency: 1.650818806127839e-5
allele num: 121152
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*611C>G
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5679C>G
  hgvsp: ENSP00000320485.7:p.Asp1893Glu
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2368C>G
  hgvsp: ENSP00000390317.2:p.Asp790Glu
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4530C>G
  hgvsp: ENSP00000363267.2:p.Asp1510Glu
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.663C>G
  hgvsp: ENSP00000442437.1:p.Asp221Glu
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5028C>G
  hgvsp: ENSP00000387636.2:p.Asp1676Glu
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*662C>G
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6721
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6064
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5321
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3984
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3879
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10248
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp1893Glu
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-27106084-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106084
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106084
    reference: chr 1
allele count: 1
allele frequency: 8.253549026081216e-6
allele num: 121160
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2384C>A
  hgvsp: ENSP00000390317.2:p.Pro796Thr
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4546C>A
  hgvsp: ENSP00000363267.2:p.Pro1516Thr
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5044C>A
  hgvsp: ENSP00000387636.2:p.Pro1682Thr
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5695C>A
  hgvsp: ENSP00000320485.7:p.Pro1899Thr
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.679C>A
  hgvsp: ENSP00000442437.1:p.Pro227Thr
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*678C>A
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*627C>A
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6718
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4033
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6494
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2696
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2220
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro1899Thr
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

1-27106086-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106086
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106086
    reference: chr 1
allele count: 1
allele frequency: 8.252731654177533e-6
allele num: 121172
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5046T>C
  hgvsp: ENST00000457599.2:c.5046T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2386T>C
  hgvsp: ENST00000430799.2:c.2386T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*629T>C
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*680T>C
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.681T>C
  hgvsp: ENST00000540690.1:c.681T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5697T>C
  hgvsp: ENST00000324856.7:c.5697T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4548T>C
  hgvsp: ENST00000374152.2:c.4548T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6718
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4051
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6494
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6078
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3330
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2714
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro1899Pro
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

1-27106093-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106093
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106093
    reference: chr 1
allele count: 1
allele frequency: 8.249872126982032e-6
allele num: 121214
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5053C>T
  hgvsp: ENSP00000387636.2:p.Pro1685Ser
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*636C>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4555C>T
  hgvsp: ENSP00000363267.2:p.Pro1519Ser
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5704C>T
  hgvsp: ENSP00000320485.7:p.Pro1902Ser
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*687C>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.688C>T
  hgvsp: ENSP00000442437.1:p.Pro230Ser
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2393C>T
  hgvsp: ENSP00000390317.2:p.Pro799Ser
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6494
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6718
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4140
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3887
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2225
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2694
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10542
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro1902Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/1-27106103-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106103
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106103
    reference: chr 1
allele count: 1
allele frequency: 8.248783304462591e-6
allele num: 121230
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.698A>C
  hgvsp: ENSP00000442437.1:p.Lys233Thr
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4565A>C
  hgvsp: ENSP00000363267.2:p.Lys1522Thr
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*697A>C
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*646A>C
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5714A>C
  hgvsp: ENSP00000320485.7:p.Lys1905Thr
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2403A>C
  hgvsp: ENSP00000390317.2:p.Lys802Thr
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5063A>C
  hgvsp: ENSP00000387636.2:p.Lys1688Thr
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6494
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6717
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6119
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5326
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3378
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2875
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Lys1905Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-27106104-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106104
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106104
    reference: chr 1
allele count: 1
allele frequency: 8.249736008447729e-6
allele num: 121216
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*698A>G
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.699A>G
  hgvsp: ENST00000540690.1:c.699A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5715A>G
  hgvsp: ENST00000324856.7:c.5715A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2404A>G
  hgvsp: ENST00000430799.2:c.2404A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4566A>G
  hgvsp: ENST00000374152.2:c.4566A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5064A>G
  hgvsp: ENST00000457599.2:c.5064A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*647A>G
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6716
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5326
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6494
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4202
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3055
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2698
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2164
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33332
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2716
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Lys1905Lys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

1-27106106-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106106
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106106
    reference: chr 1
allele count: 191
allele frequency: 1.575439638391237e-3
allele num: 121236
alternate allele: A
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*649G>A
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*700G>A
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4568G>A
  hgvsp: ENSP00000363267.2:p.Arg1523Gln
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.701G>A
  hgvsp: ENSP00000442437.1:p.Arg234Gln
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5717G>A
  hgvsp: ENSP00000320485.7:p.Arg1906Gln
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2406G>A
  hgvsp: ENSP00000390317.2:p.Arg803Gln
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5066G>A
  hgvsp: ENSP00000387636.2:p.Arg1689Gln
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6693
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6100
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6474
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3888
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4240
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5272
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3063
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 8.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 9.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 9.75e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 6227
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2872
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg1906Gln
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-27106106-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106106
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106106
    reference: chr 1
allele count: 11
allele frequency: 9.073212577122306e-5
allele num: 121236
alternate allele: C
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4568G>C
  hgvsp: ENSP00000363267.2:p.Arg1523Pro
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.701G>C
  hgvsp: ENSP00000442437.1:p.Arg234Pro
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*649G>C
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2406G>C
  hgvsp: ENSP00000390317.2:p.Arg803Pro
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5066G>C
  hgvsp: ENSP00000387636.2:p.Arg1689Pro
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5717G>C
  hgvsp: ENSP00000320485.7:p.Arg1906Pro
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*700G>C
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6474
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3063
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6227
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6693
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2872
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2162
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10630
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg1906Pro
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

1-27106108-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106108
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106108
    reference: chr 1
allele count: 3
allele frequency: 2.473941153186436e-5
allele num: 121264
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.703A>G
  hgvsp: ENSP00000442437.1:p.Ile235Val
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*702A>G
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4570A>G
  hgvsp: ENSP00000363267.2:p.Ile1524Val
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*651A>G
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5068A>G
  hgvsp: ENSP00000387636.2:p.Ile1690Val
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2408A>G
  hgvsp: ENSP00000390317.2:p.Ile804Val
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5719A>G
  hgvsp: ENSP00000320485.7:p.Ile1907Val
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6498
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5294
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3883
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3894
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6249
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3074
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6713
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33312
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2166
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ile1907Val
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS

1-27106108-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106108
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106108
    reference: chr 1
allele count: 3
allele frequency: 2.473941153186436e-5
allele num: 121264
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2408A>T
  hgvsp: ENSP00000390317.2:p.Ile804Phe
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5719A>T
  hgvsp: ENSP00000320485.7:p.Ile1907Phe
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4570A>T
  hgvsp: ENSP00000363267.2:p.Ile1524Phe
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*702A>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*651A>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5068A>T
  hgvsp: ENSP00000387636.2:p.Ile1690Phe
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.703A>T
  hgvsp: ENSP00000442437.1:p.Ile235Phe
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6713
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6498
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3883
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3074
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3894
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5294
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6249
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3449
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2166
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2720
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2240
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2884
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile1907Phe
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ

1-27106109-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106109
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106109
    reference: chr 1
allele count: 22
allele frequency: 1.815900686740623e-4
allele num: 121152
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*703T>C
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4571T>C
  hgvsp: ENSP00000363267.2:p.Ile1524Thr
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2409T>C
  hgvsp: ENSP00000390317.2:p.Ile804Thr
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.704T>C
  hgvsp: ENSP00000442437.1:p.Ile235Thr
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5720T>C
  hgvsp: ENSP00000320485.7:p.Ile1907Thr
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*652T>C
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5069T>C
  hgvsp: ENSP00000387636.2:p.Ile1690Thr
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3097
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4248
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6086
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3921
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6510
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6716
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3887
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5295
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2721
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile1907Thr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/1-27106111-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106111
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106111
    reference: chr 1
allele count: 775
allele frequency: 6.575821341297855e-3
allele num: 117856
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2411A>C
  hgvsp: ENSP00000390317.2:p.Thr805Pro
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4573A>C
  hgvsp: ENSP00000363267.2:p.Thr1525Pro
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5071A>C
  hgvsp: ENSP00000387636.2:p.Thr1691Pro
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*654A>C
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.706A>C
  hgvsp: ENSP00000442437.1:p.Thr236Pro
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5722A>C
  hgvsp: ENSP00000320485.7:p.Thr1908Pro
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*705A>C
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 8.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 9.75e1
  variant carriers: 584
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 8.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 3841
  bin: 6.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 5326
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 5830
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6185
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3946
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 6612
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3996
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 7.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2742
  bin: 7.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 9.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 6433
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 5222
  bin: 6.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 31816
  bin: 9.75e1
  variant carriers: 467
genotype quality: GenotypeQuality
  all individuals: 2839
  bin: 9.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 1430
  bin: 2.5e0
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 3.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 3.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 2136
  bin: 8.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 4.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.25e1
  variant carriers: 15
hgvs: p.Thr1908Pro
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

1-27106120-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106120
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106120
    reference: chr 1
allele count: 1
allele frequency: 8.241305422778968e-6
allele num: 121340
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5731A>G
  hgvsp: ENSP00000320485.7:p.Met1911Val
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*663A>G
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2420A>G
  hgvsp: ENSP00000390317.2:p.Met808Val
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5080A>G
  hgvsp: ENSP00000387636.2:p.Met1694Val
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.715A>G
  hgvsp: ENSP00000442437.1:p.Met239Val
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*714A>G
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4582A>G
  hgvsp: ENSP00000363267.2:p.Met1528Val
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5913
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4336
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3535
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4206
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32577
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2832
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Met1911Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

1-27106134-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106134
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106134
    reference: chr 1
allele count: 5
allele frequency: 4.119769952045878e-5
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*728G>A
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2434G>A
  hgvsp: ENST00000430799.2:c.2434G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.729G>A
  hgvsp: ENST00000540690.1:c.729G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5094G>A
  hgvsp: ENST00000457599.2:c.5094G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5745G>A
  hgvsp: ENST00000324856.7:c.5745G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4596G>A
  hgvsp: ENST00000374152.2:c.4596G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*677G>A
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6701
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4376
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3874
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3536
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6514
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5243
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2888
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu1915Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

http://identifiers.org/exac.variant/1-27106141-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106141
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106141
    reference: chr 1
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5101C>A
  hgvsp: ENST00000457599.2:c.5101C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4603C>A
  hgvsp: ENST00000374152.2:c.4603C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5752C>A
  hgvsp: ENST00000324856.7:c.5752C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*735C>A
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.736C>A
  hgvsp: ENST00000540690.1:c.736C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2441C>A
  hgvsp: ENST00000430799.2:c.2441C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*684C>A
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4392
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5927
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5243
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3536
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4209
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6512
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2888
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3682
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2378
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2222
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2831
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg1918Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum

1-27106142-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106142
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106142
    reference: chr 1
allele count: 8
allele frequency: 6.590871642774756e-5
allele num: 121380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5102G>A
  hgvsp: ENSP00000387636.2:p.Arg1701Gln
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*685G>A
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4604G>A
  hgvsp: ENSP00000363267.2:p.Arg1535Gln
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*736G>A
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2442G>A
  hgvsp: ENSP00000390317.2:p.Arg815Gln
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.737G>A
  hgvsp: ENSP00000442437.1:p.Arg246Gln
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5753G>A
  hgvsp: ENSP00000320485.7:p.Arg1918Gln
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5924
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6512
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3538
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4399
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32580
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3688
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2378
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg1918Gln
num of homozygotes: 1
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

1-27106153-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106153
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106153
    reference: chr 1
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5113T>C
  hgvsp: ENST00000457599.2:c.5113T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*696T>C
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4615T>C
  hgvsp: ENST00000374152.2:c.4615T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2453T>C
  hgvsp: ENST00000430799.2:c.2453T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*747T>C
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5764T>C
  hgvsp: ENST00000324856.7:c.5764T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.748T>C
  hgvsp: ENST00000540690.1:c.748T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6514
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2222
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11084
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32575
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2830
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2927
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu1922Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-27106158-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106158
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106158
    reference: chr 1
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5769C>T
  hgvsp: ENST00000324856.7:c.5769C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2458C>T
  hgvsp: ENST00000430799.2:c.2458C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*752C>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*701C>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5118C>T
  hgvsp: ENST00000457599.2:c.5118C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.753C>T
  hgvsp: ENST00000540690.1:c.753C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4620C>T
  hgvsp: ENST00000374152.2:c.4620C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6513
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5939
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4431
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32575
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11109
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2830
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3699
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr1923Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

1-27106159-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106159
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106159
    reference: chr 1
allele count: 7
allele frequency: 5.766442599182813e-5
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4621G>A
  hgvsp: ENSP00000363267.2:p.Glu1541Lys
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.754G>A
  hgvsp: ENSP00000442437.1:p.Glu252Lys
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5770G>A
  hgvsp: ENSP00000320485.7:p.Glu1924Lys
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*702G>A
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2459G>A
  hgvsp: ENSP00000390317.2:p.Glu821Lys
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*753G>A
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5119G>A
  hgvsp: ENSP00000387636.2:p.Glu1707Lys
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4431
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6512
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6704
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3702
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2223
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2830
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu1924Lys
num of homozygotes: 1
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

1-27106168-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106168
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106168
    reference: chr 1
allele count: 41
allele frequency: 3.377320878432923e-4
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*711G>C
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2468G>C
  hgvsp: ENSP00000390317.2:p.Ala824Pro
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.763G>C
  hgvsp: ENSP00000442437.1:p.Ala255Pro
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5779G>C
  hgvsp: ENSP00000320485.7:p.Ala1927Pro
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4630G>C
  hgvsp: ENSP00000363267.2:p.Ala1544Pro
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5128G>C
  hgvsp: ENSP00000387636.2:p.Ala1710Pro
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*762G>C
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3874
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 9.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 5942
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4437
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4209
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6510
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6230
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6704
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2385
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11115
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala1927Pro
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP

1-27106176-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106176
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106176
    reference: chr 1
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.771T>G
  hgvsp: ENSP00000442437.1:p.Ser257Arg
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4638T>G
  hgvsp: ENSP00000363267.2:p.Ser1546Arg
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5136T>G
  hgvsp: ENSP00000387636.2:p.Ser1712Arg
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5787T>G
  hgvsp: ENSP00000320485.7:p.Ser1929Arg
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*719T>G
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2476T>G
  hgvsp: ENSP00000390317.2:p.Ser826Arg
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*770T>G
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4448
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3879
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2388
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2888
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2928
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser1929Arg
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-27106179-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106179
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106179
    reference: chr 1
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5790A>G
  hgvsp: ENST00000324856.7:c.5790A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.774A>G
  hgvsp: ENST00000540690.1:c.774A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4641A>G
  hgvsp: ENST00000374152.2:c.4641A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*773A>G
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2479A>G
  hgvsp: ENST00000430799.2:c.2479A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5139A>G
  hgvsp: ENST00000457599.2:c.5139A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*722A>G
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5947
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3879
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2388
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser1930Ser
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

1-27106183-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106183
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106183
    reference: chr 1
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.778G>T
  hgvsp: ENSP00000442437.1:p.Ala260Ser
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2483G>T
  hgvsp: ENSP00000390317.2:p.Ala829Ser
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4645G>T
  hgvsp: ENSP00000363267.2:p.Ala1549Ser
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5143G>T
  hgvsp: ENSP00000387636.2:p.Ala1715Ser
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*777G>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5794G>T
  hgvsp: ENSP00000320485.7:p.Ala1932Ser
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*726G>T
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5947
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6512
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3545
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3879
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32570
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3706
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2387
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala1932Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

1-27106187-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106187
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106187
    reference: chr 1
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*781T>C
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.782T>C
  hgvsp: ENSP00000442437.1:p.Ile261Thr
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2487T>C
  hgvsp: ENSP00000390317.2:p.Ile830Thr
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4649T>C
  hgvsp: ENSP00000363267.2:p.Ile1550Thr
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5798T>C
  hgvsp: ENSP00000320485.7:p.Ile1933Thr
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5147T>C
  hgvsp: ENSP00000387636.2:p.Ile1716Thr
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*730T>C
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3879
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2927
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2388
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3706
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2223
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ile1933Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

1-27106192-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106192
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106192
    reference: chr 1
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5803G>A
  hgvsp: ENSP00000320485.7:p.Glu1935Lys
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2492G>A
  hgvsp: ENSP00000390317.2:p.Glu832Lys
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*735G>A
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*786G>A
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4654G>A
  hgvsp: ENSP00000363267.2:p.Glu1552Lys
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.787G>A
  hgvsp: ENSP00000442437.1:p.Glu263Lys
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5152G>A
  hgvsp: ENSP00000387636.2:p.Glu1718Lys
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6704
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3879
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5947
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5242
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11149
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2834
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2888
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu1935Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

1-27106196-GCAGCAAGTTTC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106196
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106185
    reference: chr 1
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsp: ENSP00000320485.7:p.Ser1937IlefsTer4
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsp: ENSP00000442437.1:p.Ser265IlefsTer4
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsp: ENSP00000387636.2:p.Ser1720IlefsTer4
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsp: ENSP00000390317.2:p.Ser834IlefsTer4
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsp: ENSP00000363267.2:p.Ser1554IlefsTer4
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 4457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5947
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3545
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3879
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6704
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2888
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11145
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2832
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2389
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2927
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser1937IlefsTer4
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
reference allele: GCAGCAAGTTTC
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP

1-27106208-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106208
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106208
    reference: chr 1
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5819C>T
  hgvsp: ENSP00000320485.7:p.Pro1940Leu
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2508C>T
  hgvsp: ENSP00000390317.2:p.Pro837Leu
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4670C>T
  hgvsp: ENSP00000363267.2:p.Pro1557Leu
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*802C>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5168C>T
  hgvsp: ENSP00000387636.2:p.Pro1723Leu
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.803C>T
  hgvsp: ENSP00000442437.1:p.Pro268Leu
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*751C>T
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6704
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5424
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4460
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3879
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6511
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11148
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2927
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro1940Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-27106221-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106221
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106221
    reference: chr 1
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5832C>T
  hgvsp: ENST00000324856.7:c.5832C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5181C>T
  hgvsp: ENST00000457599.2:c.5181C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2521C>T
  hgvsp: ENST00000430799.2:c.2521C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*764C>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4683C>T
  hgvsp: ENST00000374152.2:c.4683C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*815C>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.816C>T
  hgvsp: ENST00000540690.1:c.816C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6704
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4466
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5946
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2387
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2887
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2832
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32571
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser1944Ser
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/1-27106222-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106222
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106222
    reference: chr 1
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4684C>A
  hgvsp: ENSP00000363267.2:p.Pro1562Thr
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5833C>A
  hgvsp: ENSP00000320485.7:p.Pro1945Thr
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*816C>A
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.817C>A
  hgvsp: ENSP00000442437.1:p.Pro273Thr
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*765C>A
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2522C>A
  hgvsp: ENSP00000390317.2:p.Pro842Thr
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5182C>A
  hgvsp: ENSP00000387636.2:p.Pro1728Thr
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2832
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro1945Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

1-27106232-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106232
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106232
    reference: chr 1
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5843G>A
  hgvsp: ENSP00000320485.7:p.Ser1948Asn
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4694G>A
  hgvsp: ENSP00000363267.2:p.Ser1565Asn
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*826G>A
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.827G>A
  hgvsp: ENSP00000442437.1:p.Ser276Asn
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*775G>A
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5192G>A
  hgvsp: ENSP00000387636.2:p.Ser1731Asn
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2532G>A
  hgvsp: ENSP00000390317.2:p.Ser845Asn
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5946
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4462
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3545
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2384
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2928
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3711
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32571
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser1948Asn
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

1-27106238-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106238
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106238
    reference: chr 1
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.833G>A
  hgvsp: ENSP00000442437.1:p.Arg278Gln
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4700G>A
  hgvsp: ENSP00000363267.2:p.Arg1567Gln
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*832G>A
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5849G>A
  hgvsp: ENSP00000320485.7:p.Arg1950Gln
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*781G>A
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2538G>A
  hgvsp: ENSP00000390317.2:p.Arg847Gln
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5198G>A
  hgvsp: ENSP00000387636.2:p.Arg1733Gln
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4456
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3547
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2832
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3709
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg1950Gln
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ

1-27106243-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106243
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106243
    reference: chr 1
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5854A>T
  hgvsp: ENSP00000320485.7:p.Ile1952Phe
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.838A>T
  hgvsp: ENSP00000442437.1:p.Ile280Phe
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2543A>T
  hgvsp: ENSP00000390317.2:p.Ile849Phe
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*837A>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5203A>T
  hgvsp: ENSP00000387636.2:p.Ile1735Phe
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4705A>T
  hgvsp: ENSP00000363267.2:p.Ile1569Phe
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*786A>T
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4455
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3550
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5954
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2928
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2222
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile1952Phe
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ

1-27106266-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106266
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106266
    reference: chr 1
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4728C>T
  hgvsp: ENST00000374152.2:c.4728C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.861C>T
  hgvsp: ENST00000540690.1:c.861C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5226C>T
  hgvsp: ENST00000457599.2:c.5226C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2566C>T
  hgvsp: ENST00000430799.2:c.2566C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*860C>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*809C>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5877C>T
  hgvsp: ENST00000324856.7:c.5877C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3547
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4453
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4209
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5950
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3705
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32570
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11150
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro1959Pro
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

1-27106267-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106267
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106267
    reference: chr 1
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5227C>T
  hgvsp: ENSP00000387636.2:p.His1743Tyr
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*861C>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4729C>T
  hgvsp: ENSP00000363267.2:p.His1577Tyr
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2567C>T
  hgvsp: ENSP00000390317.2:p.His857Tyr
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.862C>T
  hgvsp: ENSP00000442437.1:p.His288Tyr
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*810C>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5878C>T
  hgvsp: ENSP00000320485.7:p.His1960Tyr
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3545
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4209
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6510
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4453
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2928
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3707
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2832
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.His1960Tyr
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

1-27106275-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106275
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106275
    reference: chr 1
allele count: 6
allele frequency: 4.941850887885876e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.870G>A
  hgvsp: ENST00000540690.1:c.870G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4737G>A
  hgvsp: ENST00000374152.2:c.4737G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2575G>A
  hgvsp: ENST00000430799.2:c.2575G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5886G>A
  hgvsp: ENST00000324856.7:c.5886G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*869G>A
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*818G>A
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5235G>A
  hgvsp: ENST00000457599.2:c.5235G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6510
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5426
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11157
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2222
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3708
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Lys1962Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP

1-27106285-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106285
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106285
    reference: chr 1
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5896C>T
  hgvsp: ENSP00000320485.7:p.Pro1966Ser
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2585C>T
  hgvsp: ENSP00000390317.2:p.Pro863Ser
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.880C>T
  hgvsp: ENSP00000442437.1:p.Pro294Ser
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*828C>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4747C>T
  hgvsp: ENSP00000363267.2:p.Pro1583Ser
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5245C>T
  hgvsp: ENSP00000387636.2:p.Pro1749Ser
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*879C>T
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6510
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3881
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2833
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2222
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro1966Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

1-27106300-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106300
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106300
    reference: chr 1
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*894C>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.895C>T
  hgvsp: ENST00000540690.1:c.895C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2600C>T
  hgvsp: ENST00000430799.2:c.2600C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5911C>T
  hgvsp: ENST00000324856.7:c.5911C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*843C>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5260C>T
  hgvsp: ENST00000457599.2:c.5260C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4762C>T
  hgvsp: ENST00000374152.2:c.4762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6509
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5964
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4452
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2383
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32570
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2222
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu1971Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum

1-27106305-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106305
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106305
    reference: chr 1
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*848C>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2605C>T
  hgvsp: ENST00000430799.2:c.2605C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.900C>T
  hgvsp: ENST00000540690.1:c.900C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5916C>T
  hgvsp: ENST00000324856.7:c.5916C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*899C>T
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4767C>T
  hgvsp: ENST00000374152.2:c.4767C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5265C>T
  hgvsp: ENST00000457599.2:c.5265C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6509
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5957
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4206
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32572
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2925
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2380
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2886
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asp1972Asp
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

1-27106305-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 27106305
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 27106305
    reference: chr 1
allele count: 3
allele frequency: 2.470925443942938e-5
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000320485
  ensembl transcript: ENST00000324856
  gene symbol: ARID1A
  hgvsc: ENST00000324856.7:c.5916C>G
  hgvsp: ENSP00000320485.7:p.Asp1972Glu
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000442437
  ensembl transcript: ENST00000540690
  gene symbol: ARID1A
  hgvsc: ENST00000540690.1:c.900C>G
  hgvsp: ENSP00000442437.1:p.Asp300Glu
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000436692
  ensembl transcript: ENST00000532781
  gene symbol: ARID1A
  hgvsc: ENST00000532781.1:c.*848C>G
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000432368
  ensembl transcript: ENST00000466382
  gene symbol: ARID1A
  hgvsc: ENST00000466382.1:c.*899C>G
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000390317
  ensembl transcript: ENST00000430799
  gene symbol: ARID1A
  hgvsc: ENST00000430799.2:c.2605C>G
  hgvsp: ENSP00000390317.2:p.Asp869Glu
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000363267
  ensembl transcript: ENST00000374152
  gene symbol: ARID1A
  hgvsc: ENST00000374152.2:c.4767C>G
  hgvsp: ENSP00000363267.2:p.Asp1589Glu
  variant of: http://identifiers.org/hgnc/11110
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117713
  ensembl protein: ENSP00000387636
  ensembl transcript: ENST00000457599
  gene symbol: ARID1A
  hgvsc: ENST00000457599.2:c.5265C>G
  hgvsp: ENSP00000387636.2:p.Asp1755Glu
  variant of: http://identifiers.org/hgnc/11110
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5957
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6509
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp1972Glu
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 67
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33339
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2713
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2168
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2717
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3351
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.635767970707265e-5
allele num: 10378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50105073551486e-5
allele num: 66620
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.47e-1

QD
type: SiteQuality
SIO_000300: 1.29e0

VQSLOD
type: SiteQuality
SIO_000300: -7.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.927e1

DP
type: SiteQuality
SIO_000300: 3.090408e6

FS
type: SiteQuality
SIO_000300: 1.6e0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3362
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10855
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2216
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33341
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2166
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2871
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2708
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66618
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.633911368015414e-5
allele num: 10380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.362e0

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.99e-1

FS
type: SiteQuality
SIO_000300: 1.722e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.922e1

DP
type: SiteQuality
SIO_000300: 3.090807e6

QD
type: SiteQuality
SIO_000300: 1.273e1

GenotypeQuality
all individuals: 10855
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2708
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2716
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2871
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33341
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 3362
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2166
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002191599867904e-5
allele num: 66618
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.457216940363008e-4
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.633911368015414e-5
allele num: 10380
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 5.922e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.362e0

MQRankSum
type: SiteQuality
SIO_000300: 3.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.27e-1

DP
type: SiteQuality
SIO_000300: 3.090807e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 1.273e1

FS
type: SiteQuality
SIO_000300: 1.722e0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2722
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2714
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10879
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3379
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.5e-1

QD
type: SiteQuality
SIO_000300: 1.338e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 1.088e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.29e-1

DP
type: SiteQuality
SIO_000300: 3.087348e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.337e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2162
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2870
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33358
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2214
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2706
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.502881844380403e-5
allele num: 66624
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.087311e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 3.221e0

MQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.15e0

QD
type: SiteQuality
SIO_000300: 1.292e1

MQ
type: SiteQuality
SIO_000300: 5.958e1

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.626492106276473e-5
allele num: 10388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66636
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.956e1

MQRankSum
type: SiteQuality
SIO_000300: 5.31e-1

DP
type: SiteQuality
SIO_000300: 3.08713e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.47e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.703e0

QD
type: SiteQuality
SIO_000300: 1.028e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.53e-1

GenotypeQuality
all individuals: 58
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 10903
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500960614793468e-5
allele num: 66624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

FS
type: SiteQuality
SIO_000300: 7.57e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

QD
type: SiteQuality
SIO_000300: 1.112e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -9.360000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.7e-2

DP
type: SiteQuality
SIO_000300: 3.085596e6

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 2219
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500960614793468e-5
allele num: 66624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.2e-1

DP
type: SiteQuality
SIO_000300: 3.085596e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.360000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

FS
type: SiteQuality
SIO_000300: 7.57e-1

QD
type: SiteQuality
SIO_000300: 1.112e1

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2218
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2715
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variant carriers: 0

GenotypeQuality
all individuals: 2160
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.817080557238038e-4
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002191599867904e-5
allele num: 66618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.358e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.4e-2

DP
type: SiteQuality
SIO_000300: 3.085543e6

VQSLOD
type: SiteQuality
SIO_000300: 1.82e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 1.094e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.88e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

GenotypeQuality
all individuals: 64
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3368
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GenotypeQuality
all individuals: 2870
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.624639076034648e-5
allele num: 10390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66622
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.979e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.1e-2

VQSLOD
type: SiteQuality
SIO_000300: -8.542999999999999e-1

FS
type: SiteQuality
SIO_000300: 1.0718e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.15e-1

DP
type: SiteQuality
SIO_000300: 3.085343e6

QD
type: SiteQuality
SIO_000300: 1.101e1

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2869
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002371873780286e-5
allele num: 66614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.6e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

QD
type: SiteQuality
SIO_000300: 1.264e1

VQSLOD
type: SiteQuality
SIO_000300: 2.34e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.72e-1

FS
type: SiteQuality
SIO_000300: 1.176e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 3.084877e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.505e0

GenotypeQuality
all individuals: 216
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 10806
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.37985e2

VQSLOD
type: SiteQuality
SIO_000300: -2.554e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.179e1

MQ
type: SiteQuality
SIO_000300: 4.646e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.68e-1

DP
type: SiteQuality
SIO_000300: 3.083894e6

QD
type: SiteQuality
SIO_000300: 2.018e1

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.239e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.31e-1

MQ
type: SiteQuality
SIO_000300: 4.609e1

FS
type: SiteQuality
SIO_000300: 1.58177e2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -7.06e-1

DP
type: SiteQuality
SIO_000300: 3.08332e6

MQRankSum
type: SiteQuality
SIO_000300: -1.169e1

VQSLOD
type: SiteQuality
SIO_000300: -3.045e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2209
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GenotypeQuality
all individuals: 285
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66592
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.601e1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.96e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.65388e2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 6.95e0

DP
type: SiteQuality
SIO_000300: 3.082509e6

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 47
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GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 10466
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
all individuals: 2209
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33357
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50253929140247e-5
allele num: 66554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.080328e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

QD
type: SiteQuality
SIO_000300: 1.157e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.86e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 9.19e-1

MQ
type: SiteQuality
SIO_000300: 5.983e1

MQRankSum
type: SiteQuality
SIO_000300: -2.8e-2

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2161
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3
bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
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GenotypeQuality
all individuals: 130
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.005168890491646e-5
allele num: 66552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e0

FS
type: SiteQuality
SIO_000300: 2.455e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.68e-1

DP
type: SiteQuality
SIO_000300: 3.079988e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.820000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.284e1

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 106
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variant carriers: 0

GenotypeQuality
all individuals: 2704
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.00507858280494e-5
allele num: 66554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

VQSLOD
type: SiteQuality
SIO_000300: 5.7e-1

QD
type: SiteQuality
SIO_000300: 1.232e1

MQ
type: SiteQuality
SIO_000300: 5.93e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 5.496e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.36e-1

DP
type: SiteQuality
SIO_000300: 3.079954e6

GenotypeQuality
all individuals: 2159
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
all individuals: 2683
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503352476021528e-5
allele num: 66518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.63460140537921e-4
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.92789666473877e-4
allele num: 10374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.81e0

FS
type: SiteQuality
SIO_000300: 2.446e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

DP
type: SiteQuality
SIO_000300: 3.077517e6

MQRankSum
type: SiteQuality
SIO_000300: 2.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.104e0

QD
type: SiteQuality
SIO_000300: 1.286e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.64e-1

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10292
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2213
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variant carriers: 0

GenotypeQuality
all individuals: 3289
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.006704952043056e-5
allele num: 66518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 8.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.56e-1

DP
type: SiteQuality
SIO_000300: 3.077274e6

QD
type: SiteQuality
SIO_000300: 1.151e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.2e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.095e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.19e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 3281
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GenotypeQuality
all individuals: 33358
bin: 9.75e1
variant carriers: 15

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66504
num of homozygotes: 0

East Asian
type: Population
allele count: 14
allele frequency: 1.619620546043498e-3
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.013e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.29e-1

QD
type: SiteQuality
SIO_000300: 1.058e1

MQ
type: SiteQuality
SIO_000300: 5.969e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

DP
type: SiteQuality
SIO_000300: 3.077196e6

VQSLOD
type: SiteQuality
SIO_000300: 4.96e0

GenotypeQuality
all individuals: 2681
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 33351
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503307276007216e-5
allele num: 66520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.79e-1

QD
type: SiteQuality
SIO_000300: 1.325e1

MQRankSum
type: SiteQuality
SIO_000300: -6.6e-1

DP
type: SiteQuality
SIO_000300: 3.076709e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.58e-1

FS
type: SiteQuality
SIO_000300: 3.312e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.352e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2871
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3292
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.018838965963466e-5
allele num: 66458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.966e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-1

DP
type: SiteQuality
SIO_000300: 3.076123e6

FS
type: SiteQuality
SIO_000300: 1.096e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

QD
type: SiteQuality
SIO_000300: 1.445e1

MQRankSum
type: SiteQuality
SIO_000300: -5.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.81e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.95e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66456
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.075921e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-2

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.19e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.907999999999999e-1

QD
type: SiteQuality
SIO_000300: 8.42e0

FS
type: SiteQuality
SIO_000300: 4.353e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.112e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 76
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GenotypeQuality
all individuals: 186
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GenotypeQuality
all individuals: 2163
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.203695344708254e-4
allele num: 66462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: 1.47e-1

DP
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BaseQRankSum
type: SiteQuality
SIO_000300: -6.71e-1

ClippingRankSum
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InbreedingCoeff
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FS
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SIO_000300: 0.0e0

VQSLOD
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QD
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ReadPosRankSum
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SIO_000300: 1.59e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66456
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 9.659969088098918e-5
allele num: 10352
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.088e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
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DP
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QD
type: SiteQuality
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ClippingRankSum
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SIO_000300: -1.476e0

ReadPosRankSum
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SIO_000300: 1.47e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.503985561738607e-5
allele num: 66490
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Other
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ClippingRankSum
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SIO_000300: 5.53e-1

MQ
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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FS
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VQSLOD
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BaseQRankSum
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QD
type: SiteQuality
SIO_000300: 1.109e1

DP
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SIO_000300: 3.075814e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66470
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 4.627487274409995e-4
allele num: 8644
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Other
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allele frequency: 0.0e0
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African
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allele num: 10340
num of homozygotes: 0

South Asian
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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DP
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MQRankSum
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BaseQRankSum
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.094e0

MQ
type: SiteQuality
SIO_000300: 5.984e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 10
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allele num: 66480
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Latino
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South Asian
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MQ
type: SiteQuality
SIO_000300: 5.943e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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QD
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DP
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.95e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.63e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66476
num of homozygotes: 0

Latino
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num of homozygotes: 0

East Asian
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Other
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European (Finnish)
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African
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South Asian
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allele num: 16510
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MQRankSum
type: SiteQuality
SIO_000300: 7.15e-1

DP
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QD
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MQ
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InbreedingCoeff
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ClippingRankSum
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FS
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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Other
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African
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European (Non-Finnish)
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European (Finnish)
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Latino
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VQSLOD
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DP
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MQ
type: SiteQuality
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FS
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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QD
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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African
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South Asian
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European (Non-Finnish)
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Latino
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Other
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DP
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VQSLOD
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MQRankSum
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FS
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ReadPosRankSum
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BaseQRankSum
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MQ
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QD
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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East Asian
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Latino
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Other
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European (Non-Finnish)
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South Asian
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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FS
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QD
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DP
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MQ
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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African
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Latino
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European (Finnish)
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South Asian
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European (Non-Finnish)
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ClippingRankSum
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MQRankSum
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MQ
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InbreedingCoeff
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BaseQRankSum
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DP
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QD
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FS
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.079134e6

MQ
type: SiteQuality
SIO_000300: 5.913e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.074e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
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SIO_000300: 1.49e0

MQRankSum
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SIO_000300: -1.1e-1

FS
type: SiteQuality
SIO_000300: 2.297e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.83e0

QD
type: SiteQuality
SIO_000300: 1.282e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 119
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502584445245823e-5
allele num: 66552
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
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DP
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MQ
type: SiteQuality
SIO_000300: 5.97e1

InbreedingCoeff
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SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.625e-1

MQRankSum
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SIO_000300: 1.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.032e0

ReadPosRankSum
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SIO_000300: 2.71e0

QD
type: SiteQuality
SIO_000300: 1.408e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.161e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66562
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -9.89e-1

QD
type: SiteQuality
SIO_000300: 1.38e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

DP
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SIO_000300: 3.080001e6

VQSLOD
type: SiteQuality
SIO_000300: 8.120000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.8e-2

FS
type: SiteQuality
SIO_000300: 7.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501681883709755e-5
allele num: 66592
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.427e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e0

BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 1.2523e1

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.758e0

VQSLOD
type: SiteQuality
SIO_000300: -2.485e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.081442e6

GenotypeQuality
all individuals: 2230
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.267e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

QD
type: SiteQuality
SIO_000300: 1.37e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 3.08302e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.03e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.643201542912247e-5
allele num: 10370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66596
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.207e1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.519e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

MQRankSum
type: SiteQuality
SIO_000300: -1.99e-1

DP
type: SiteQuality
SIO_000300: 3.083227e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 190

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.819741661846925e-4
allele num: 10374
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 10
allele frequency: 1.514233797698365e-3
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 6
allele frequency: 5.182242183451373e-4
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 167
allele frequency: 2.507055785744311e-3
allele num: 66612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.58e0

MQRankSum
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SIO_000300: 2.83e-1

ClippingRankSum
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SIO_000300: -1.78e-1

MQ
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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DP
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QD
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.42e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 11

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66612
num of homozygotes: 0

South Asian
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 11
allele frequency: 1.271382339343504e-3
allele num: 8652
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.58e0

FS
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
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SIO_000300: 5.972e1

ReadPosRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.502476361999099e-5
allele num: 66630
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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European (Finnish)
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allele frequency: 0.0e0
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African
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South Asian
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BaseQRankSum
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SIO_000300: 2.64e0

ClippingRankSum
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DP
type: SiteQuality
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VQSLOD
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MQRankSum
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MQ
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QD
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ReadPosRankSum
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InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 1.1e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.0016509079994e-5
allele num: 66630
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16510
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African
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allele frequency: 9.63020030816641e-5
allele num: 10384
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QD
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ClippingRankSum
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SIO_000300: -7.13e-1

FS
type: SiteQuality
SIO_000300: 1.1e0

MQRankSum
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SIO_000300: 9.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

BaseQRankSum
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SIO_000300: 2.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
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SIO_000300: 3.085839e6

VQSLOD
type: SiteQuality
SIO_000300: 1.45e0

MQ
type: SiteQuality
SIO_000300: 5.933e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 9.697439875872769e-5
allele num: 10312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.102228362063788e-4
allele num: 66596
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
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European (Finnish)
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allele count: 5
allele frequency: 7.571168988491823e-4
allele num: 6604
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
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Other
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allele frequency: 1.108647450110865e-3
allele num: 902
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ClippingRankSum
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SIO_000300: 1.32e0

ReadPosRankSum
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SIO_000300: -1.548e0

QD
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FS
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -7.0e-4

MQ
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MQRankSum
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DP
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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variant carriers: 16

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 21

East Asian
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allele count: 19
allele frequency: 2.211874272409779e-3
allele num: 8590
num of homozygotes: 0

African
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allele count: 95
allele frequency: 9.848641924113622e-3
allele num: 9646
num of homozygotes: 0

Latino
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allele count: 13
allele frequency: 1.129060274448497e-3
allele num: 11514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 133
allele frequency: 2.191825972313777e-2
allele num: 6068
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 498
allele frequency: 7.698491219391541e-3
allele num: 64688
num of homozygotes: 0

Other
type: Population
allele count: 12
allele frequency: 1.415094339622642e-2
allele num: 848
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South Asian
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allele count: 5
allele frequency: 3.029935765361775e-4
allele num: 16502
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FS
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SIO_000300: 3.12172e2

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
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SIO_000300: 5.922e1

MQRankSum
type: SiteQuality
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VQSLOD
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SIO_000300: -4.587e2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.619e0

QD
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SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.48e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.328e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
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African
type: Population
allele count: 1
allele frequency: 9.619084263178146e-5
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66686
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East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
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FS
type: SiteQuality
SIO_000300: 2.19e0

MQRankSum
type: SiteQuality
SIO_000300: -8.59e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.53e-1

QD
type: SiteQuality
SIO_000300: 1.339e1

DP
type: SiteQuality
SIO_000300: 3.063216e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.59e-1

GenotypeQuality
all individuals: 2379
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.318535152876144e-4
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.23e1

VQSLOD
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SIO_000300: 1.27e0

DP
type: SiteQuality
SIO_000300: 3.06423e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.39e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

MQRankSum
type: SiteQuality
SIO_000300: 4.98e-1

FS
type: SiteQuality
SIO_000300: 2.505e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -6.844e0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.318e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.98e-1

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 4.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.607e0

MQ
type: SiteQuality
SIO_000300: 5.989e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.15e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 25
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
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South Asian
type: Population
allele count: 7
allele frequency: 4.239854633555421e-4
allele num: 16510
num of homozygotes: 1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.97e-1

DP
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BaseQRankSum
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FS
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QD
type: SiteQuality
SIO_000300: 1.468e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.76e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

VQSLOD
type: SiteQuality
SIO_000300: 4.69e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
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Other
type: Population
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BaseQRankSum
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InbreedingCoeff
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FS
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
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DP
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.38e-1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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Other
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East Asian
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European (Non-Finnish)
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South Asian
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allele frequency: 6.056935190793458e-5
allele num: 16510
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Latino
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.79e0

VQSLOD
type: SiteQuality
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ReadPosRankSum
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QD
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FS
type: SiteQuality
SIO_000300: 7.61e-1

InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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MQRankSum
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DP
type: SiteQuality
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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South Asian
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allele frequency: 1.211387038158692e-4
allele num: 16510
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African
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allele count: 5
allele frequency: 4.804920238324044e-4
allele num: 10406
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66724
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MQ
type: SiteQuality
SIO_000300: 5.974e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.41e0

VQSLOD
type: SiteQuality
SIO_000300: 9.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.93e-2

DP
type: SiteQuality
SIO_000300: 3.065413e6

FS
type: SiteQuality
SIO_000300: 1.179e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.99e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.919999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.448e1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32588
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variant carriers: 41

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.454828122300915e-4
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 35
allele frequency: 3.363444166826831e-3
allele num: 10406
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.9e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.803e0

VQSLOD
type: SiteQuality
SIO_000300: 5.97e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.441e1

DP
type: SiteQuality
SIO_000300: 3.068081e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66734
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.886e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.41e0

DP
type: SiteQuality
SIO_000300: 3.065342e6

FS
type: SiteQuality
SIO_000300: 1.399e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.590000000000001e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.019e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.98e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 3.0654e6

VQSLOD
type: SiteQuality
SIO_000300: 1.49e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.5e-1

FS
type: SiteQuality
SIO_000300: 5.369e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-1

QD
type: SiteQuality
SIO_000300: 1.473e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.58e-1

FS
type: SiteQuality
SIO_000300: 2.527e0

QD
type: SiteQuality
SIO_000300: 1.34e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.025e0

DP
type: SiteQuality
SIO_000300: 3.065469e6

MQ
type: SiteQuality
SIO_000300: 5.97e1

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
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allele num: 16512
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QD
type: SiteQuality
SIO_000300: 1.553e1

VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.816e1

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.96e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 3.065508e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 2
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variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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Other
type: Population
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allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.065642e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.0e-2

BaseQRankSum
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SIO_000300: -3.512e0

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
type: Population
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allele num: 10406
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Other
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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Latino
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ClippingRankSum
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MQRankSum
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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FS
type: SiteQuality
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InbreedingCoeff
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QD
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MQ
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VQSLOD
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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East Asian
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Latino
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European (Non-Finnish)
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allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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MQRankSum
type: SiteQuality
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FS
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MQ
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VQSLOD
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QD
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DP
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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South Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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Other
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DP
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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FS
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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VQSLOD
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QD
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MQ
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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South Asian
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European (Finnish)
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Other
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Latino
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QD
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InbreedingCoeff
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BaseQRankSum
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MQ
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FS
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ClippingRankSum
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MQRankSum
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VQSLOD
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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Latino
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Other
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European (Finnish)
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ClippingRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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FS
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BaseQRankSum
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MQRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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South Asian
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African
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Other
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European (Non-Finnish)
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MQRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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DP
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VQSLOD
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QD
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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Latino
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African
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Other
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South Asian
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MQRankSum
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DP
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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FS
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QD
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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Other
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Latino
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European (Finnish)
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African
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QD
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MQ
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InbreedingCoeff
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MQRankSum
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DP
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ClippingRankSum
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FS
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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European (Finnish)
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Other
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South Asian
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MQRankSum
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MQ
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FS
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InbreedingCoeff
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ClippingRankSum
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QD
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DP
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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European (Finnish)
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South Asian
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East Asian
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Other
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VQSLOD
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MQ
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FS
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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African
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European (Non-Finnish)
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East Asian
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MQ
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VQSLOD
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InbreedingCoeff
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FS
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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European (Finnish)
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African
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InbreedingCoeff
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DP
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ReadPosRankSum
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FS
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ClippingRankSum
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VQSLOD
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QD
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MQ
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.52e-1

FS
type: SiteQuality
SIO_000300: 1.756e0

MQRankSum
type: SiteQuality
SIO_000300: -1.03e-1

DP
type: SiteQuality
SIO_000300: 3.065787e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.9e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.64e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

QD
type: SiteQuality
SIO_000300: 1.366e1