http://identifiers.org/exac.variant/1-206575030-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206575030
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206575030
    reference: chr 1
allele count: 4
allele frequency: 3.343531103198087e-5
allele num: 119634
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-1030+26C>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.403+26C>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.636+26C>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.796+26C>A
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12806
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41330
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2174
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1437
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42732
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 7.25e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-206575031-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206575031
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206575031
    reference: chr 1
allele count: 4
allele frequency: 3.34246941640484e-5
allele num: 119672
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.636+27C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-1030+27C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.796+27C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.403+27C>T
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41309
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12829
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 577
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42719
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2186
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
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genotype quality: GenotypeQuality
  all individuals: 2086
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

1-206575039-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206575039
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206575039
    reference: chr 1
allele count: 9
allele frequency: 7.498500299940011e-5
allele num: 120024
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.403+35G>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.636+35G>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-1030+35G>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.796+35G>T
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3660
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41208
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12965
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 397
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1447
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum

1-206575040-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206575040
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206575040
    reference: chr 1
allele count: 1
allele frequency: 8.329585020074299e-6
allele num: 120054
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.403+36G>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.796+36G>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-1030+36G>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.636+36G>T
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2104
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
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genotype quality: GenotypeQuality
  all individuals: 1702
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  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42781
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-206575041-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206575041
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206575041
    reference: chr 1
allele count: 597
allele frequency: 4.995314278064127e-3
allele num: 119512
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-1030+37C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.796+37C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.403+37C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.636+37C>T
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12832
  bin: 2.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.75e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 40284
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 3.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 3.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.25e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 9.75e1
  variant carriers: 127
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 3.25e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.25e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 7.5e0
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 8155
  bin: 6.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.5e0
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 2.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 3.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 1913
  bin: 9.75e1
  variant carriers: 255
genotype quality: GenotypeQuality
  all individuals: 2095
  bin: 7.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 4.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 41775
  bin: 6.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 4.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 8.75e1
  variant carriers: 25
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum

1-206575046-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206575046
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206575046
    reference: chr 1
allele count: 2
allele frequency: 1.66497394315779e-5
allele num: 120122
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.636+42G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.403+42G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-1030+42G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.796+42G>A
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3746
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40180
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12894
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1465
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2256
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8177
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2483
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

1-206575048-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206575048
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206575048
    reference: chr 1
allele count: 1
allele frequency: 8.325701440346349e-6
allele num: 120110
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.636+44G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.796+44G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-1030+44G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.403+44G>A
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8160
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1465
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2486
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2067
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2257
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

1-206575048-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206575048
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206575048
    reference: chr 1
allele count: 1
allele frequency: 8.325701440346349e-6
allele num: 120110
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.636+44G>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.403+44G>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.796+44G>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-1030+44G>C
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41502
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1465
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2067
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2486
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum

1-206575048-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206575048
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206575048
    reference: chr 1
allele count: 1
allele frequency: 8.325701440346349e-6
allele num: 120110
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-1030+44G>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.636+44G>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.403+44G>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.796+44G>T
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3784
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41502
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2067
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2486
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP

1-206575054-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206575054
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206575054
    reference: chr 1
allele count: 1
allele frequency: 8.325008325008325e-6
allele num: 120120
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.403+50G>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-1030+50G>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.636+50G>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.796+50G>C
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13342
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39592
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2064
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40350
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8083
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1469
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ

1-206578650-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206578650
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206578650
    reference: chr 1
allele count: 0
allele frequency: NaN
allele num: 0
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.679G>C
  hgvsp: ENSP00000390898.1:p.Val227Leu
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.446G>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.329G>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-987G>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.839G>C
  hgvsp: ENSP00000295713.5:p.Val281Leu
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val281Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-206579697-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579697
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579697
    reference: chr 1
allele count: 3
allele frequency: 9.765625e-4
allele num: 3072
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.389-39C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-927-39C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.739-39C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.506-39C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.899-39C>T
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24451
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5201
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16076
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1024
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3818
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 178
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.25e1
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7480
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 504
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1336
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

1-206579728-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579728
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579728
    reference: chr 1
allele count: 2
allele frequency: 4.868549172346641e-4
allele num: 4108
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.739-8C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.899-8C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.389-8C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-927-8C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.506-8C>T
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30712
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7341
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5960
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3171
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
hgvs: c.899-8C>T
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP

1-206579729-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579729
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579729
    reference: chr 1
allele count: 1
allele frequency: 2.409638554216867e-4
allele num: 4150
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.739-7G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.389-7G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.506-7G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.899-7G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-927-7G>A
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7505
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31140
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6174
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28429
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2904
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 3.25e1
  variant carriers: 0
hgvs: c.899-7G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

1-206579737-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579737
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579737
    reference: chr 1
allele count: 32
allele frequency: 8.394543546694649e-3
allele num: 3812
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.740T>G
  hgvsp: ENSP00000390898.1:p.Val247Gly
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.900T>G
  hgvsp: ENSP00000295713.5:p.Val301Gly
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.390T>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-926T>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.507T>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.2T>G
  hgvsp: ENSP00000403036.1:p.Val1?
  variant of: http://identifiers.org/hgnc/19751
canonical: false
consequence: start lost
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9064
  bin: 7.5e0
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31632
  bin: 2.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 3.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9542
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 24938
  bin: 7.5e0
  variant carriers: 6
hgvs: p.Val1?
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

1-206579762-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579762
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579762
    reference: chr 1
allele count: 5
allele frequency: 6.894649751792609e-4
allele num: 7252
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-901G>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.27G>C
  hgvsp: ENST00000439126.1:c.27G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.925G>C
  hgvsp: ENST00000295713.5:c.925G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.532G>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.415G>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.765G>C
  hgvsp: ENST00000414007.1:c.765G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33418
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15343
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1674
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31370
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12718
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 1
hgvs: p.Leu309Leu
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/1-206579789-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579789
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579789
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 12576
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.559C>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-874C>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.952C>A
  hgvsp: ENST00000295713.5:c.952C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.442C>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.54C>A
  hgvsp: ENST00000439126.1:c.54C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.792C>A
  hgvsp: ENST00000414007.1:c.792C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: synonymous
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27612
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22574
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1303
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1201
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1360
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21618
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val318Val
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

1-206579789-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579789
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579789
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 12576
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.792C>G
  hgvsp: ENST00000414007.1:c.792C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.54C>G
  hgvsp: ENST00000439126.1:c.54C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.952C>G
  hgvsp: ENST00000295713.5:c.952C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.442C>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.559C>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-874C>G
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: synonymous
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27612
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22574
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2171
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1201
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1360
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21618
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val318Val
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum

1-206579789-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579789
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579789
    reference: chr 1
allele count: 45
allele frequency: 3.57824427480916e-3
allele num: 12576
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.54C>T
  hgvsp: ENST00000439126.1:c.54C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.792C>T
  hgvsp: ENST00000414007.1:c.792C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-874C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.952C>T
  hgvsp: ENST00000295713.5:c.952C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.559C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.442C>T
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3276
  bin: 1.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27612
  bin: 7.5e0
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 22574
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 1.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1360
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1860
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1201
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2171
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1303
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 21618
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 6.75e1
  variant carriers: 4
hgvs: p.Val318Val
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

1-206579790-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579790
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579790
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 13840
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-873G>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.953G>T
  hgvsp: ENSP00000295713.5:p.Glu319Ter
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.55G>T
  hgvsp: ENSP00000403036.1:p.Glu19Ter
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.560G>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.793G>T
  hgvsp: ENSP00000390898.1:p.Glu265Ter
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.443G>T
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 29158
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3410
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20884
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1658
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1451
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2259
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20142
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26621
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu319Ter
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

1-206579790-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579790
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579790
    reference: chr 1
allele count: 1
allele frequency: 7.225433526011561e-5
allele num: 13840
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.560G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-873G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.793G>A
  hgvsp: ENSP00000390898.1:p.Glu265Lys
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.55G>A
  hgvsp: ENSP00000403036.1:p.Glu19Lys
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.953G>A
  hgvsp: ENSP00000295713.5:p.Glu319Lys
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.443G>A
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3410
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20884
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20142
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2259
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1241
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu319Lys
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

1-206579791-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579791
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579791
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 14532
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.444A>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-872A>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.954A>G
  hgvsp: ENSP00000295713.5:p.Glu319Gly
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.561A>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.794A>G
  hgvsp: ENSP00000390898.1:p.Glu265Gly
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.56A>G
  hgvsp: ENSP00000403036.1:p.Glu19Gly
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29815
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20108
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27642
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2490
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1492
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1262
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19459
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu319Gly
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

1-206579798-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579798
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579798
    reference: chr 1
allele count: 26554
allele frequency: 5.006410256410256e-1
allele num: 53040
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.451T>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.961T>C
  hgvsp: ENST00000295713.5:c.961T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.801T>C
  hgvsp: ENST00000414007.1:c.801T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-865T>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.63T>C
  hgvsp: ENST00000439126.1:c.63T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.568T>C
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: synonymous
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 21913
  bin: 7.5e0
  variant carriers: 17764
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 2.25e1
  variant carriers: 2726
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.75e1
  variant carriers: 144
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.25e1
  variant carriers: 119
genotype depth: GenotypeDepth
  all individuals: 15343
  bin: 1.25e1
  variant carriers: 15003
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 2.75e1
  variant carriers: 1082
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 6737
  bin: 1.75e1
  variant carriers: 6723
genotype depth: GenotypeDepth
  all individuals: 4586
  bin: 2.5e0
  variant carriers: 1652
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 3.25e1
  variant carriers: 498
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.25e1
  variant carriers: 196
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 3.75e1
  variant carriers: 271
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 4.75e1
  variant carriers: 715
genotype quality: GenotypeQuality
  all individuals: 1625
  bin: 7.75e1
  variant carriers: 1625
genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 3.25e1
  variant carriers: 1172
genotype quality: GenotypeQuality
  all individuals: 2501
  bin: 7.5e0
  variant carriers: 1612
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 9.25e1
  variant carriers: 660
genotype quality: GenotypeQuality
  all individuals: 1970
  bin: 7.25e1
  variant carriers: 1970
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 4.25e1
  variant carriers: 697
genotype quality: GenotypeQuality
  all individuals: 16715
  bin: 9.75e1
  variant carriers: 16715
genotype quality: GenotypeQuality
  all individuals: 1348
  bin: 1.25e1
  variant carriers: 1338
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 2.25e1
  variant carriers: 756
genotype quality: GenotypeQuality
  all individuals: 3319
  bin: 8.25e1
  variant carriers: 3319
genotype quality: GenotypeQuality
  all individuals: 2434
  bin: 5.25e1
  variant carriers: 2434
hgvs: p.Phe321Phe
num of homozygotes: 37
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum

1-206579799-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579799
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579799
    reference: chr 1
allele count: 3
allele frequency: 5.380007890678239e-5
allele num: 55762
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.569G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.452G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.802G>A
  hgvsp: ENSP00000390898.1:p.Asp268Asn
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.962G>A
  hgvsp: ENSP00000295713.5:p.Asp322Asn
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.64G>A
  hgvsp: ENSP00000403036.1:p.Asp22Asn
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-864G>A
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15490
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21371
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8401
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6851
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12756
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4989
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7419
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3425
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4403
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6610
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2387
  bin: 4.75e1
  variant carriers: 1
hgvs: p.Asp322Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

1-206579803-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579803
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579803
    reference: chr 1
allele count: 1
allele frequency: 1.782976143779196e-5
allele num: 56086
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.966T>C
  hgvsp: ENSP00000295713.5:p.Val323Ala
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-860T>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.68T>C
  hgvsp: ENSP00000403036.1:p.Val23Ala
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.456T>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.573T>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.806T>C
  hgvsp: ENSP00000390898.1:p.Val269Ala
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 15539
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8666
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21424
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3671
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2303
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5070
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1699
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6924
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6648
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4998
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3367
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15258
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val323Ala
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: T
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

1-206579825-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579825
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579825
    reference: chr 1
allele count: 6
allele frequency: 1.000300090027008e-4
allele num: 59982
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.988C>G
  hgvsp: ENSP00000295713.5:p.Ser330Arg
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-838C>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.828C>G
  hgvsp: ENSP00000390898.1:p.Ser276Arg
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.90C>G
  hgvsp: ENSP00000403036.1:p.Ser30Arg
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.595C>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.478C>G
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22906
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9848
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6073
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13838
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1156
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 974
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4806
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9171
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3185
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1274
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5495
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser330Arg
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

1-206579834-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579834
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579834
    reference: chr 1
allele count: 2
allele frequency: 3.098949456134371e-5
allele num: 64538
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.997G>T
  hgvsp: ENSP00000295713.5:p.Met333Ile
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.837G>T
  hgvsp: ENSP00000390898.1:p.Met279Ile
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-829G>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.604G>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.99G>T
  hgvsp: ENSP00000403036.1:p.Met33Ile
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.487G>T
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 11081
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22587
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22378
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4085
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2259
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4669
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4295
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Met333Ile
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP

1-206579840-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579840
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579840
    reference: chr 1
allele count: 6
allele frequency: 8.703977717817043e-5
allele num: 68934
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.105C>T
  hgvsp: ENST00000439126.1:c.105C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.610C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.843C>T
  hgvsp: ENST00000414007.1:c.843C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1003C>T
  hgvsp: ENST00000295713.5:c.1003C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.493C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-823C>T
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18216
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3724
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9530
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3509
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18057
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1911
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21350
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3574
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser335Ser
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

1-206579841-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579841
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579841
    reference: chr 1
allele count: 36
allele frequency: 5.073280721533258e-4
allele num: 70960
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.494G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.611G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-822G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1004G>A
  hgvsp: ENSP00000295713.5:p.Val336Ile
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.106G>A
  hgvsp: ENSP00000403036.1:p.Val36Ile
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.844G>A
  hgvsp: ENSP00000390898.1:p.Val282Ile
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19808
  bin: 2.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3463
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20339
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8703
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3479
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 877
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3409
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1762
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 19850
  bin: 6.25e1
  variant carriers: 1
hgvs: p.Val336Ile
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

1-206579852-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579852
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579852
    reference: chr 1
allele count: 77
allele frequency: 9.133395013403554e-4
allele num: 84306
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.622G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1015G>A
  hgvsp: ENST00000295713.5:c.1015G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.117G>A
  hgvsp: ENST00000439126.1:c.117G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-811G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.855G>A
  hgvsp: ENST00000414007.1:c.855G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.505G>A
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2412
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5106
  bin: 2.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 15209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28787
  bin: 2.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4976
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 7.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 3.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 903
  bin: 9.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 29474
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2335
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 1.75e1
  variant carriers: 2
hgvs: p.Thr339Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

1-206579855-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579855
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579855
    reference: chr 1
allele count: 1
allele frequency: 1.138174368313226e-5
allele num: 87860
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.625C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1018C>T
  hgvsp: ENST00000295713.5:c.1018C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-808C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.858C>T
  hgvsp: ENST00000414007.1:c.858C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.508C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.120C>T
  hgvsp: ENST00000439126.1:c.120C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13878
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5465
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4341
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2477
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1516
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30872
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2137
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14438
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1605
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val340Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

1-206579861-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579861
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579861
    reference: chr 1
allele count: 4
allele frequency: 4.325165978244415e-5
allele num: 92482
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.631A>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.126A>T
  hgvsp: ENSP00000403036.1:p.Glu42Asp
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1024A>T
  hgvsp: ENSP00000295713.5:p.Glu342Asp
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.864A>T
  hgvsp: ENSP00000390898.1:p.Glu288Asp
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.514A>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-802A>T
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3606
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6160
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11996
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1294
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1808
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34034
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2652
  bin: 6.75e1
  variant carriers: 1
hgvs: p.Glu342Asp
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD

1-206579869-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579869
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579869
    reference: chr 1
allele count: 3
allele frequency: 3.109001595954152e-5
allele num: 96494
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.522T>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.639T>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1032T>C
  hgvsp: ENSP00000295713.5:p.Met345Thr
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.134T>C
  hgvsp: ENSP00000403036.1:p.Met45Thr
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.872T>C
  hgvsp: ENSP00000390898.1:p.Met291Thr
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-794T>C
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10349
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6783
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35021
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36530
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1518
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11047
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Met345Thr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

1-206579876-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579876
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579876
    reference: chr 1
allele count: 9
allele frequency: 9.066000483520026e-5
allele num: 99272
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.529G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1039G>A
  hgvsp: ENST00000295713.5:c.1039G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.646G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.141G>A
  hgvsp: ENST00000439126.1:c.141G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.879G>A
  hgvsp: ENST00000414007.1:c.879G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-787G>A
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35990
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7472
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10027
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2941
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1293
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys347Lys
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

1-206579899-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579899
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579899
    reference: chr 1
allele count: 15
allele frequency: 1.44947142608662e-4
allele num: 103486
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-764C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.552C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.164C>T
  hgvsp: ENSP00000403036.1:p.Ala55Val
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1062C>T
  hgvsp: ENSP00000295713.5:p.Ala355Val
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.902C>T
  hgvsp: ENSP00000390898.1:p.Ala301Val
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.669C>T
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7683
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4908
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8826
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34644
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10278
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1170
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 38278
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala355Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ

1-206579905-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579905
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579905
    reference: chr 1
allele count: 3
allele frequency: 2.903038513644281e-5
allele num: 103340
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1068A>T
  hgvsp: ENSP00000295713.5:p.Gln357Leu
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-758A>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.170A>T
  hgvsp: ENSP00000403036.1:p.Gln57Leu
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.908A>T
  hgvsp: ENSP00000390898.1:p.Gln303Leu
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.675A>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.558A>T
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8706
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7812
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8069
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30983
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1879
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2673
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34793
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 7.25e1
  variant carriers: 1
hgvs: p.Gln357Leu
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-206579906-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579906
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579906
    reference: chr 1
allele count: 1
allele frequency: 9.680354688195776e-6
allele num: 103302
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.171G>C
  hgvsp: ENSP00000403036.1:p.Gln57His
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-757G>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.559G>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.909G>C
  hgvsp: ENSP00000390898.1:p.Gln303His
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1069G>C
  hgvsp: ENSP00000295713.5:p.Gln357His
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.676G>C
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 7780
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8082
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8786
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30845
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2643
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1873
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12106
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1948
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gln357His
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

1-206579906-GCAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579906
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579903
    reference: chr 1
allele count: 2
allele frequency: 1.936070937639155e-5
allele num: 103302
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.910_912delCAA
  hgvsp: ENSP00000390898.1:p.Gln304del
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.560_562delCAA
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.677_679delCAA
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.172_174delCAA
  hgvsp: ENSP00000403036.1:p.Gln58del
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1070_1072delCAA
  hgvsp: ENSP00000295713.5:p.Gln358del
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-756_-754delCAA
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7780
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30845
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8082
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8786
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 813
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1873
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12106
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2643
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gln358del
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: GCAA
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

http://identifiers.org/exac.variant/1-206579907-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579907
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579908
    reference: chr 1
allele count: 5
allele frequency: 4.836338311537568e-5
allele num: 103384
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.679dupA
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1072dupA
  hgvsp: ENSP00000295713.5:p.Glu359ArgfsTer28
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-754dupA
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.912dupA
  hgvsp: ENSP00000390898.1:p.Glu305ArgfsTer28
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.562dupA
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.174dupA
  hgvsp: ENSP00000403036.1:p.Glu59ArgfsTer28
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8881
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30799
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7767
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1886
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12136
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu359ArgfsTer28
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

1-206579918-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579918
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579918
    reference: chr 1
allele count: 3
allele frequency: 2.911942848268365e-5
allele num: 103024
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.183G>A
  hgvsp: ENST00000439126.1:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-745G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1081G>A
  hgvsp: ENST00000295713.5:c.1081G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.688G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.921G>A
  hgvsp: ENST00000414007.1:c.921G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.571G>A
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7793
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6094
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14028
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 965
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3560
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14381
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3033
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5229
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25486
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu361Glu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-206579925-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579925
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579925
    reference: chr 1
allele count: 63
allele frequency: 6.212405088255596e-4
allele num: 101410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.190T>C
  hgvsp: ENSP00000403036.1:p.Tyr64His
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1088T>C
  hgvsp: ENSP00000295713.5:p.Tyr364His
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.578T>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.928T>C
  hgvsp: ENSP00000390898.1:p.Tyr310His
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.695T>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-738T>C
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 15464
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 14242
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8270
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14292
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7274
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1517
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 9.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2801
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 13345
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2438
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 14550
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Tyr364His
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-206579936-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579936
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579936
    reference: chr 1
allele count: 42334
allele frequency: 4.919011875159768e-1
allele num: 86062
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.936+3A>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.198+3A>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.706A>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1096+3A>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.589A>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-730+3A>G
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: splice region
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 3369
  bin: 2.75e1
  variant carriers: 3205
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 2.5e0
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 4.75e1
  variant carriers: 1116
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 3.25e1
  variant carriers: 1981
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 9.75e1
  variant carriers: 896
genotype depth: GenotypeDepth
  all individuals: 7507
  bin: 7.5e0
  variant carriers: 3174
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 4.25e1
  variant carriers: 1413
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 3.75e1
  variant carriers: 1627
genotype depth: GenotypeDepth
  all individuals: 7472
  bin: 2.25e1
  variant carriers: 6952
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.75e1
  variant carriers: 127
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 246
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 5.25e1
  variant carriers: 895
genotype depth: GenotypeDepth
  all individuals: 14139
  bin: 1.75e1
  variant carriers: 12017
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 180
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.25e1
  variant carriers: 397
genotype depth: GenotypeDepth
  all individuals: 16344
  bin: 1.25e1
  variant carriers: 11134
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.75e1
  variant carriers: 600
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.25e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 82
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 7.5e0
  variant carriers: 223
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 1.25e1
  variant carriers: 319
genotype quality: GenotypeQuality
  all individuals: 1248
  bin: 9.25e1
  variant carriers: 1247
genotype quality: GenotypeQuality
  all individuals: 1283
  bin: 7.75e1
  variant carriers: 1279
genotype quality: GenotypeQuality
  all individuals: 1906
  bin: 4.25e1
  variant carriers: 1898
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 1.75e1
  variant carriers: 288
genotype quality: GenotypeQuality
  all individuals: 22878
  bin: 9.75e1
  variant carriers: 22873
genotype quality: GenotypeQuality
  all individuals: 962
  bin: 2.75e1
  variant carriers: 896
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 3.25e1
  variant carriers: 681
genotype quality: GenotypeQuality
  all individuals: 2314
  bin: 5.75e1
  variant carriers: 2305
genotype quality: GenotypeQuality
  all individuals: 2115
  bin: 7.25e1
  variant carriers: 2110
genotype quality: GenotypeQuality
  all individuals: 1623
  bin: 3.75e1
  variant carriers: 1607
hgvs: c.1096+3A>G
num of homozygotes: 1
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

1-206579950-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579950
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579950
    reference: chr 1
allele count: 184
allele frequency: 3.375155917528799e-3
allele num: 54516
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1096+17G>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-730+17G>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.720G>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.603G>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.936+17G>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.198+17G>C
  variant of: http://identifiers.org/hgnc/19751
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14634
  bin: 1.25e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 9952
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3258
  bin: 1.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 9.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21698
  bin: 7.5e0
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4584
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 7.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 6.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 2354
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 7.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1340
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 19207
  bin: 2.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 4.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1304
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 9.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 31
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

1-206579952-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579952
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579952
    reference: chr 1
allele count: 1
allele frequency: 2.003205128205128e-5
allele num: 49920
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.198+19T>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.936+19T>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-730+19T>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.605T>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.722T>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1096+19T>G
  variant of: http://identifiers.org/hgnc/19751
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12668
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2998
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16126
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5675
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1273
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3235
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1301
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19449
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

1-206579962-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579962
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579962
    reference: chr 1
allele count: 15
allele frequency: 1.742889012827663e-4
allele num: 86064
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.615C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1096+29C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.936+29C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.732C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-730+29C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.198+29C>T
  variant of: http://identifiers.org/hgnc/19751
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 13121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23946
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2988
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4661
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3325
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4476
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5342
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6178
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4378
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26180
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ

1-206579963-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579963
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579963
    reference: chr 1
allele count: 246
allele frequency: 2.767403140890069e-3
allele num: 88892
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.616G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.733G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1096+30G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-730+30G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.198+30G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.936+30G>A
  variant of: http://identifiers.org/hgnc/19751
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 12351
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 1.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 9.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21439
  bin: 1.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 3.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6535
  bin: 2.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5787
  bin: 2.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 5399
  bin: 9.75e1
  variant carriers: 99
genotype quality: GenotypeQuality
  all individuals: 24578
  bin: 2.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3091
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3759
  bin: 3.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 8039
  bin: 6.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 5461
  bin: 2.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 2.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 4.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 9.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 3705
  bin: 6.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 969
  bin: 7.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 8.25e1
  variant carriers: 10
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum

1-206579968-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579968
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579968
    reference: chr 1
allele count: 3
allele frequency: 2.973181899268597e-5
allele num: 100902
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.621C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.738C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.198+35C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1096+35C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.936+35C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-730+35C>T
  variant of: http://identifiers.org/hgnc/19751
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2838
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8426
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20705
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11487
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13255
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7991
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1548
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1159
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5445
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum

1-206579972-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579972
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579972
    reference: chr 1
allele count: 1
allele frequency: 9.177006093532046e-6
allele num: 108968
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.625C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.742C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.198+39C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-730+39C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.936+39C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1096+39C>T
  variant of: http://identifiers.org/hgnc/19751
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13050
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28959
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6078
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10026
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29965
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1770
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ

1-206579973-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579973
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579973
    reference: chr 1
allele count: 1
allele frequency: 9.078694120637687e-6
allele num: 110148
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-730+40A>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.936+40A>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.743A>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1096+40A>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.198+40A>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.626A>G
  variant of: http://identifiers.org/hgnc/19751
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3183
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13181
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3907
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29981
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1859
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10232
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5163
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1088
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP

1-206579975-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579975
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579975
    reference: chr 1
allele count: 1
allele frequency: 8.866663120001419e-6
allele num: 112782
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.198+42T>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.628T>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.745T>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.936+42T>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-730+42T>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1096+42T>C
  variant of: http://identifiers.org/hgnc/19751
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3303
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2672
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32018
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1937
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10764
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1914
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3246
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/1-206579977-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579977
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579977
    reference: chr 1
allele count: 1
allele frequency: 8.756414073308699e-6
allele num: 114202
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.630C>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1096+44C>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.198+44C>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-730+44C>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.747C>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.936+44C>A
  variant of: http://identifiers.org/hgnc/19751
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13638
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1191
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2331
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33298
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1978
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5619
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/1-206579978-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579978
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579978
    reference: chr 1
allele count: 1
allele frequency: 8.729355075247041e-6
allele num: 114556
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1096+45A>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-730+45A>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.198+45A>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.631A>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.748A>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.936+45A>C
  variant of: http://identifiers.org/hgnc/19751
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3459
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33464
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10934
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

1-206579979-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579979
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579979
    reference: chr 1
allele count: 5
allele frequency: 4.355704230259948e-5
allele num: 114792
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.936+46G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1096+46G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.198+46G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.749G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.632G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-730+46G>A
  variant of: http://identifiers.org/hgnc/19751
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33061
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1993
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1994
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 33453
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5656
  bin: 9.75e1
  variant carriers: 5
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum

1-206579984-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579984
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579984
    reference: chr 1
allele count: 1
allele frequency: 8.626043751293907e-6
allele num: 115928
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.637C>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1096+51C>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.754C>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-730+51C>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.936+51C>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.198+51C>G
  variant of: http://identifiers.org/hgnc/19751
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33544
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3653
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1304
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2050
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33897
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5724
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD

1-206579987-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579987
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579987
    reference: chr 1
allele count: 1
allele frequency: 8.568392912225382e-6
allele num: 116708
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.936+54G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.198+54G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1096+54G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.757G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-730+54G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.640G>A
  variant of: http://identifiers.org/hgnc/19751
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33716
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1449
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2089
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 939
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2069
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

1-206579993-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579993
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579993
    reference: chr 1
allele count: 1
allele frequency: 8.487379267029927e-6
allele num: 117822
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.763T>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.936+60T>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-730+60T>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.198+60T>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1096+60T>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.646T>A
  variant of: http://identifiers.org/hgnc/19751
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34272
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3750
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2147
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11143
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1325
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34497
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

1-206579997-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206579997
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206579997
    reference: chr 1
allele count: 8
allele frequency: 6.753334458889077e-5
allele num: 118460
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.767G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1096+64G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.650G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.936+64G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.198+64G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-730+64G>A
  variant of: http://identifiers.org/hgnc/19751
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34609
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14030
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3771
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2175
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2115
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11217
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34740
  bin: 6.25e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-206580002-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206580002
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206580003
    reference: chr 1
allele count: 4
allele frequency: 3.359199166918607e-5
allele num: 119076
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.936+70dupA
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.198+70dupA
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1096+70dupA
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-730+70dupA
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000467419
  gene symbol: SRGAP2
  hgvsc: ENST00000467419.1:n.656dupA
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163486
  ensembl transcript: ENST00000483628
  gene symbol: SRGAP2
  hgvsc: ENST00000483628.1:n.773dupA
  variant of: http://identifiers.org/hgnc/19751
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14072
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3799
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2129
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34967
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2199
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1385
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

1-206589200-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206589200
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206589200
    reference: chr 1
allele count: 43
allele frequency: 6.860023611244058e-4
allele num: 62682
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1097-49C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-729-49C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.937-49C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.199-49C>T
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3953
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22706
  bin: 7.5e0
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2580
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5737
  bin: 2.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15690
  bin: 1.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4874
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1356
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 5.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 3869
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3377
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5102
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4079
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7434
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5259
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6780
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13431
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2224
  bin: 9.75e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 1792
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1471
  bin: 6.75e1
  variant carriers: 3
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

1-206589211-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206589211
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206589211
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 64540
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-729-38G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.199-38G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.937-38G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1097-38G>A
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23592
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2952
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4141
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8412
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21292
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1765
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1017
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3774
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3468
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5158
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1589
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2184
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD

1-206589217-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206589217
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206589217
    reference: chr 1
allele count: 2
allele frequency: 2.992847095441894e-5
allele num: 66826
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1097-32T>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-729-32T>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.937-32T>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.199-32T>G
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23787
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14507
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7905
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1909
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1051
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2610
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 1723
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2186
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22577
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3196
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genotype quality: GenotypeQuality
  all individuals: 711
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6242
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-206589219-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206589219
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206589219
    reference: chr 1
allele count: 1
allele frequency: 1.478677470870054e-5
allele num: 67628
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.199-30A>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1097-30A>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.937-30A>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-729-30A>C
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8924
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23644
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13993
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1764
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 2325
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
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genotype quality: GenotypeQuality
  all individuals: 5987
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
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genotype quality: GenotypeQuality
  all individuals: 687
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
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genotype quality: GenotypeQuality
  all individuals: 532
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genotype quality: GenotypeQuality
  all individuals: 554
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 22717
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genotype quality: GenotypeQuality
  all individuals: 2954
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genotype quality: GenotypeQuality
  all individuals: 11716
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 4907
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2186
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

1-206589225-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206589225
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206589225
    reference: chr 1
allele count: 1
allele frequency: 1.421262080727686e-5
allele num: 70360
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1097-24C>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.937-24C>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.199-24C>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-729-24C>G
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4619
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22888
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12278
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1834
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14130
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22348
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5140
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1688
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4457
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

1-206589232-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206589232
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206589232
    reference: chr 1
allele count: 1
allele frequency: 1.326787846623325e-5
allele num: 75370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.937-17C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-729-17C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.199-17C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1097-17C>T
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5008
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21225
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9858
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18616
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3739
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2031
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2190
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1932
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4014
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21305
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

1-206589233-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206589233
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206589232
    reference: chr 1
allele count: 2029
allele frequency: 2.612872485641435e-2
allele num: 77654
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.199-14delC
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1097-14delC
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-729-14delC
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.937-14delC
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.75e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 17442
  bin: 2.25e1
  variant carriers: 373
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 3.25e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 20550
  bin: 7.5e0
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 1.75e1
  variant carriers: 510
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 5258
  bin: 2.75e1
  variant carriers: 200
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 3.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 9156
  bin: 1.25e1
  variant carriers: 376
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 4.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 3739
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3917
  bin: 9.75e1
  variant carriers: 1937
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 5.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 20269
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 9.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2053
  bin: 6.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19621
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1789
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 8.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 7.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 5.25e1
  variant carriers: 11
num of homozygotes: 28
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: TC
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff

1-206589234-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206589234
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206589234
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 74522
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-729-15C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1097-15C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.937-15C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.199-15C>T
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8408
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17883
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20042
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5160
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20681
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genotype quality: GenotypeQuality
  all individuals: 3537
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 7.5e0
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2072
  bin: 6.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
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genotype quality: GenotypeQuality
  all individuals: 228
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3314
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ

1-206589235-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206589235
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206589235
    reference: chr 1
allele count: 4
allele frequency: 5.293385914300082e-5
allele num: 75566
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.937-14C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1097-14C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.199-14C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-729-14C>T
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5412
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8213
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18904
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19575
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1605
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21436
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1427
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3386
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19470
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3187
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1984
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2108
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

1-206589257-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206589257
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206589257
    reference: chr 1
allele count: 1
allele frequency: 9.830135262661214e-6
allele num: 101728
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.207A>G
  hgvsp: ENST00000439126.1:c.207A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-721A>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.945A>G
  hgvsp: ENST00000414007.1:c.945A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1105A>G
  hgvsp: ENST00000295713.5:c.1105A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34032
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7814
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3049
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9326
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9655
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38116
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2084
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Lys369Lys
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

1-206589273-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206589273
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206589273
    reference: chr 1
allele count: 1
allele frequency: 9.015181565756734e-6
allele num: 110924
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-705A>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.223A>G
  hgvsp: ENSP00000403036.1:p.Arg75Gly
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.961A>G
  hgvsp: ENSP00000390898.1:p.Arg321Gly
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1121A>G
  hgvsp: ENSP00000295713.5:p.Arg375Gly
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38298
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9667
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4828
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5237
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43923
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg375Gly
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

1-206589281-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206589281
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206589281
    reference: chr 1
allele count: 1
allele frequency: 8.849557522123894e-6
allele num: 113000
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-697C>T
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.231C>T
  hgvsp: ENST00000439126.1:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.969C>T
  hgvsp: ENST00000414007.1:c.969C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1129C>T
  hgvsp: ENST00000295713.5:c.1129C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3804
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10300
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4265
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45279
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3559
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2086
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu377Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

1-206589287-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206589287
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206589287
    reference: chr 1
allele count: 1
allele frequency: 8.787037362482866e-6
allele num: 113804
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-691C>G
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1135C>G
  hgvsp: ENST00000295713.5:c.1135C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.975C>G
  hgvsp: ENST00000414007.1:c.975C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.237C>G
  hgvsp: ENST00000439126.1:c.237C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3410
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10635
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3932
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3599
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45423
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr379Thr
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

1-206589292-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206589292
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206589292
    reference: chr 1
allele count: 1
allele frequency: 8.74691671185907e-6
allele num: 114326
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-686T>C
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.980T>C
  hgvsp: ENSP00000390898.1:p.Leu327Ser
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1140T>C
  hgvsp: ENSP00000295713.5:p.Leu381Ser
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.242T>C
  hgvsp: ENSP00000403036.1:p.Leu81Ser
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39181
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10798
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3752
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2083
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu381Ser
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD

1-206589340-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206589340
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206589340
    reference: chr 1
allele count: 3
allele frequency: 2.738775584728587e-5
allele num: 109538
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.283+7G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-645+7G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.1021+7G>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1181+7G>A
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10399
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26968
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9776
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5324
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10601
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33075
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1527
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2746
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2072
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2801
  bin: 6.75e1
  variant carriers: 0
hgvs: c.1181+7G>A
num of homozygotes: 1
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/1-206589347-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 206589347
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 206589347
    reference: chr 1
allele count: 2
allele frequency: 1.856872284324284e-5
allele num: 107708
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000295713
  ensembl transcript: ENST00000295713
  gene symbol: SRGAP2
  hgvsc: ENST00000295713.5:c.1181+14C>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000403036
  ensembl transcript: ENST00000439126
  gene symbol: SRGAP2
  hgvsc: ENST00000439126.1:c.283+14C>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000390898
  ensembl transcript: ENST00000414007
  gene symbol: SRGAP2
  hgvsc: ENST00000414007.1:c.1021+14C>A
  variant of: http://identifiers.org/hgnc/19751
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163486
  ensembl protein: ENSP00000397990
  ensembl transcript: ENST00000419187
  gene symbol: SRGAP2
  hgvsc: ENST00000419187.2:c.-645+14C>A
  variant of: http://identifiers.org/hgnc/19751
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14730
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21639
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6097
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 1657
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 8245
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 4
allele frequency: 4.103405826836274e-4
allele num: 9748
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66056
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.192e0

VQSLOD
type: SiteQuality
SIO_000300: -5.231e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

QD
type: SiteQuality
SIO_000300: 2.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.86e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.679999999999999e-1

MQ
type: SiteQuality
SIO_000300: 2.646e1

DP
type: SiteQuality
SIO_000300: 1.496222e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.254e0

GenotypeQuality
all individuals: 1441
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1664
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.025641025641026e-4
allele num: 9750
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66072
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.827930782354375e-4
allele num: 16412
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -6.103e0

MQ
type: SiteQuality
SIO_000300: 2.3e1

MQRankSum
type: SiteQuality
SIO_000300: -8.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.72e-1

DP
type: SiteQuality
SIO_000300: 1.49706e6

QD
type: SiteQuality
SIO_000300: 1.61e0

GenotypeQuality
all individuals: 559
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42796
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1687
bin: 9.75e1
variant carriers: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 9.217533797623924e-4
allele num: 9764
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

DP
type: SiteQuality
SIO_000300: 1.503914e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.074e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.775e0

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 2.3e1

QD
type: SiteQuality
SIO_000300: 8.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.71e-1

GenotypeQuality
all individuals: 8317
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9778
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508432135638218e-5
allele num: 66294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.415e0

MQRankSum
type: SiteQuality
SIO_000300: 9.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

DP
type: SiteQuality
SIO_000300: 1.50455e6

QD
type: SiteQuality
SIO_000300: 2.49e0

FS
type: SiteQuality
SIO_000300: 6.021e0

MQ
type: SiteQuality
SIO_000300: 2.339e1

VQSLOD
type: SiteQuality
SIO_000300: -7.022e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.4e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 19

GenotypeQuality
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bin: 9.25e1
variant carriers: 10

GenotypeQuality
all individuals: 2218
bin: 7.75e1
variant carriers: 18

South Asian
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allele count: 10
allele frequency: 6.077549532028686e-4
allele num: 16454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Other
type: Population
allele count: 11
allele frequency: 1.244343891402715e-2
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 18
allele frequency: 1.572876616567634e-3
allele num: 11444
num of homozygotes: 0

African
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allele count: 7
allele frequency: 7.166257166257166e-4
allele num: 9768
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 376
allele frequency: 5.703883495145631e-3
allele num: 65920
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 175
allele frequency: 2.709817280891917e-2
allele num: 6458
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.339e1

VQSLOD
type: SiteQuality
SIO_000300: -5.962e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.391e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.8e-3

QD
type: SiteQuality
SIO_000300: 9.6e-1

DP
type: SiteQuality
SIO_000300: 1.56844e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.870000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.97e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-2

GenotypeQuality
all individuals: 575
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66326
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.128668171557562e-3
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.721437292865864e-5
allele num: 11466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.032e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.07e0

MQ
type: SiteQuality
SIO_000300: 2.321e1

MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

FS
type: SiteQuality
SIO_000300: 3.182e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.135e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

DP
type: SiteQuality
SIO_000300: 1.570087e6

QD
type: SiteQuality
SIO_000300: 5.0e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.072382803011902e-5
allele num: 16468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.924e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.504e0

DP
type: SiteQuality
SIO_000300: 1.57222e6

MQRankSum
type: SiteQuality
SIO_000300: 3.24e-1

MQ
type: SiteQuality
SIO_000300: 2.766e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

QD
type: SiteQuality
SIO_000300: 5.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507886245061673e-5
allele num: 66318
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.766e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e-1

QD
type: SiteQuality
SIO_000300: 5.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.504e0

VQSLOD
type: SiteQuality
SIO_000300: -4.924e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.57222e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1465
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.165229550221394e-4
allele num: 8582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66318
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

QD
type: SiteQuality
SIO_000300: 5.0e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.24e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.924e0

MQ
type: SiteQuality
SIO_000300: 2.766e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.504e0

DP
type: SiteQuality
SIO_000300: 1.57222e6

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 6.072382803011902e-5
allele num: 16468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

DP
type: SiteQuality
SIO_000300: 1.576329e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.83e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -6.145e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.123e0

MQRankSum
type: SiteQuality
SIO_000300: -1.037e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 2.3e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.366e1

MQ
type: SiteQuality
SIO_000300: 2.504e1

DP
type: SiteQuality
SIO_000300: 8.4e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.04e-2

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.231e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
all individuals: 40
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variant carriers: 0

GenotypeQuality
all individuals: 372
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GenotypeQuality
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GenotypeQuality
all individuals: 42
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variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 160
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.426735218508997e-4
allele num: 1556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.666666666666667e-2
allele num: 120
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.21e0

FS
type: SiteQuality
SIO_000300: 1.4349e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.33e-1

MQ
type: SiteQuality
SIO_000300: 2.2e1

MQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e-1

DP
type: SiteQuality
SIO_000300: 1.09908e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.619999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.503e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.49e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
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Other
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allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1114
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 9.84251968503937e-4
allele num: 2032
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.2e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.699999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQRankSum
type: SiteQuality
SIO_000300: 5.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

QD
type: SiteQuality
SIO_000300: 3.53e0

VQSLOD
type: SiteQuality
SIO_000300: -6.892e0

FS
type: SiteQuality
SIO_000300: 2.0816e1

DP
type: SiteQuality
SIO_000300: 1.55224e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2052
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 544
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East Asian
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allele frequency: 0.0e0
allele num: 194
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 8.880994671403197e-4
allele num: 1126
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50
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FS
type: SiteQuality
SIO_000300: 6.125e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.61e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.5811e5

MQRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.23e-1

MQ
type: SiteQuality
SIO_000300: 2.2e1

QD
type: SiteQuality
SIO_000300: 8.100000000000001e-1

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 309
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GenotypeQuality
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variant carriers: 2

Other
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allele frequency: 2.272727272727273e-2
allele num: 44
num of homozygotes: 0

European (Non-Finnish)
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allele count: 23
allele frequency: 1.266519823788546e-2
allele num: 1816
num of homozygotes: 0

African
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allele frequency: 1.953125e-3
allele num: 512
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 6.097560975609756e-3
allele num: 164
num of homozygotes: 0

European (Finnish)
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allele count: 2
allele frequency: 1.25e-1
allele num: 16
num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 1.098901098901099e-2
allele num: 182
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.855287569573284e-3
allele num: 1078
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.131e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.991e0

QD
type: SiteQuality
SIO_000300: 2.0e0

DP
type: SiteQuality
SIO_000300: 1.78481e5

FS
type: SiteQuality
SIO_000300: 1.01631e2

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.052e-1

MQ
type: SiteQuality
SIO_000300: 2.2e1

MQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 170
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 342
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 304
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2044
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.417233560090703e-3
allele num: 3528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.88e-2

FS
type: SiteQuality
SIO_000300: 2.5031e1

MQ
type: SiteQuality
SIO_000300: 2.2e1

DP
type: SiteQuality
SIO_000300: 2.46904e5

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

QD
type: SiteQuality
SIO_000300: 3.41e0

MQRankSum
type: SiteQuality
SIO_000300: -1.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.37e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.398999999999999e0

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1860
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2171
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24430
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6052
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1226
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.74e-1

FS
type: SiteQuality
SIO_000300: 5.17e0

DP
type: SiteQuality
SIO_000300: 3.64604e5

MQ
type: SiteQuality
SIO_000300: 2.2e1

MQRankSum
type: SiteQuality
SIO_000300: 3.03e-1

QD
type: SiteQuality
SIO_000300: 3.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.512e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.65e-2

GenotypeQuality
all individuals: 496
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1303
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24430
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1860
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 149
bin: 4.25e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1226
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6052
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.65e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.512e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.74e-1

MQ
type: SiteQuality
SIO_000300: 2.2e1

MQRankSum
type: SiteQuality
SIO_000300: 3.03e-1

FS
type: SiteQuality
SIO_000300: 5.17e0

DP
type: SiteQuality
SIO_000300: 3.64604e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.78e-1

GenotypeQuality
all individuals: 128
bin: 5.25e1
variant carriers: 5

GenotypeQuality
all individuals: 24430
bin: 2.25e1
variant carriers: 7

GenotypeQuality
all individuals: 107
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 25
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 89
bin: 9.75e1
variant carriers: 21

GenotypeQuality
all individuals: 108
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 33
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1126
bin: 3.25e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 2.808988764044944e-3
allele num: 6052
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1226
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 1.587301587301587e-2
allele num: 126
num of homozygotes: 0

South Asian
type: Population
allele count: 26
allele frequency: 7.369614512471655e-3
allele num: 3528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.512e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.03e-1

MQ
type: SiteQuality
SIO_000300: 2.2e1

FS
type: SiteQuality
SIO_000300: 5.17e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.65e-2

DP
type: SiteQuality
SIO_000300: 3.64604e5

QD
type: SiteQuality
SIO_000300: 3.38e0

GenotypeQuality
all individuals: 540
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1241
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1198
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 170
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6650
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 694
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3884
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.83884e5

ClippingRankSum
type: SiteQuality
SIO_000300: -5.72e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 5.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.42e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.555e0

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQ
type: SiteQuality
SIO_000300: 2.2e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

GenotypeQuality
all individuals: 1658
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26621
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1451
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503759398496241e-4
allele num: 6650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 694
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3884
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQ
type: SiteQuality
SIO_000300: 2.2e1

QD
type: SiteQuality
SIO_000300: 5.43e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.555e0

DP
type: SiteQuality
SIO_000300: 3.83884e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.42e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

GenotypeQuality
all individuals: 68
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1176
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1419
bin: 1.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7008
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4046
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.89e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.398e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 3.92768e5

QD
type: SiteQuality
SIO_000300: 7.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 2.2e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
all individuals: 2756
bin: 3.75e1
variant carriers: 2756

GenotypeQuality
all individuals: 1426
bin: 1.75e1
variant carriers: 1416

GenotypeQuality
all individuals: 7105
bin: 2.5e0
variant carriers: 603

GenotypeQuality
all individuals: 1390
bin: 2.75e1
variant carriers: 1388

GenotypeQuality
all individuals: 882
bin: 6.75e1
variant carriers: 882

GenotypeQuality
all individuals: 4298
bin: 5.75e1
variant carriers: 4298

GenotypeQuality
all individuals: 1468
bin: 6.25e1
variant carriers: 1468

GenotypeQuality
all individuals: 661
bin: 8.75e1
variant carriers: 661

Latino
type: Population
allele count: 1466
allele frequency: 5.003412969283276e-1
allele num: 2930
num of homozygotes: 1

Other
type: Population
allele count: 239
allele frequency: 5.0e-1
allele num: 478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1714
allele frequency: 5.005841121495327e-1
allele num: 3424
num of homozygotes: 2

African
type: Population
allele count: 2109
allele frequency: 5.014265335235378e-1
allele num: 4206
num of homozygotes: 6

European (Non-Finnish)
type: Population
allele count: 14160
allele frequency: 5.005302226935313e-1
allele num: 28290
num of homozygotes: 16

South Asian
type: Population
allele count: 5354
allele frequency: 5.0056095736724e-1
allele num: 10696
num of homozygotes: 8

East Asian
type: Population
allele count: 1512
allele frequency: 5.013262599469496e-1
allele num: 3016
num of homozygotes: 4

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

MQ
type: SiteQuality
SIO_000300: 2.2e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-2

DP
type: SiteQuality
SIO_000300: 6.32476e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.658e-1

QD
type: SiteQuality
SIO_000300: 1.193e1

VQSLOD
type: SiteQuality
SIO_000300: 1.3215e2

FS
type: SiteQuality
SIO_000300: 1.06025e2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

GenotypeQuality
all individuals: 1713
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1680
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 813
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2087
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 857
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6642
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.001736342994524e-4
allele num: 29948
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3116
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11008
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3232
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.2e1

DP
type: SiteQuality
SIO_000300: 6.39015e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.08e0

FS
type: SiteQuality
SIO_000300: 4.827e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.12e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.82e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.069e0

QD
type: SiteQuality
SIO_000300: 9.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 162
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 845
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3188
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4393
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3136
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11068
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.319832680432906e-5
allele num: 30122
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3240
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.1027e1

QD
type: SiteQuality
SIO_000300: 1.61e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.35e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.54e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.238e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.1e-2

DP
type: SiteQuality
SIO_000300: 6.45782e5

MQRankSum
type: SiteQuality
SIO_000300: -7.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.44e0

MQ
type: SiteQuality
SIO_000300: 2.2e1

GenotypeQuality
all individuals: 901
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1117
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5941
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21825
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 6
allele frequency: 5.229213874847481e-4
allele num: 11474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4704
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3852
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3584
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.53e-1

FS
type: SiteQuality
SIO_000300: 7.091e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

MQ
type: SiteQuality
SIO_000300: 2.2e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.35e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.511e0

VQSLOD
type: SiteQuality
SIO_000300: -7.339e0

DP
type: SiteQuality
SIO_000300: 7.35234e5

QD
type: SiteQuality
SIO_000300: 7.4e-1

GenotypeQuality
all individuals: 311
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14473
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 674
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1381
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4148
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4016
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11950
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 5.073566717402334e-4
allele num: 3942
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5026
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.13e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

MQ
type: SiteQuality
SIO_000300: 2.263e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.29e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.173e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.172e0

QD
type: SiteQuality
SIO_000300: 1.59e0

DP
type: SiteQuality
SIO_000300: 8.10251e5

GenotypeQuality
all individuals: 3857
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 658
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 170
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1611
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 7.25e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 8.103727714748784e-5
allele num: 12340
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.3475935828877e-5
allele num: 37400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4488
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 6.989748369058714e-4
allele num: 4292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.2e1

FS
type: SiteQuality
SIO_000300: 1.574e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.2e-2

QD
type: SiteQuality
SIO_000300: 7.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.1e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.576e0

MQRankSum
type: SiteQuality
SIO_000300: 2.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.8e-1

DP
type: SiteQuality
SIO_000300: 8.70364e5

GenotypeQuality
all individuals: 1714
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 547
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3239
bin: 2.75e1
variant carriers: 7

GenotypeQuality
all individuals: 20665
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 393
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 386
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 8.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4596
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.596169193934557e-4
allele num: 12530
num of homozygotes: 0

African
type: Population
allele count: 31
allele frequency: 5.64868804664723e-3
allele num: 5488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4726
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.779679477205539e-5
allele num: 38562
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.05e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.36e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

DP
type: SiteQuality
SIO_000300: 9.00077e5

FS
type: SiteQuality
SIO_000300: 4.497e0

VQSLOD
type: SiteQuality
SIO_000300: -6.488e0

MQ
type: SiteQuality
SIO_000300: 2.2e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

GenotypeQuality
all individuals: 15748
bin: 2.25e1
variant carriers: 7

GenotypeQuality
all individuals: 2355
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 1819
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 707
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 194
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 457
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 431
bin: 4.25e1
variant carriers: 14

GenotypeQuality
all individuals: 1880
bin: 2.75e1
variant carriers: 4

European (Non-Finnish)
type: Population
allele count: 55
allele frequency: 1.195652173913043e-3
allele num: 46000
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 4.641089108910891e-4
allele num: 6464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 7.380073800738007e-4
allele num: 5420
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 1.278305332359387e-3
allele num: 5476
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.894356005788712e-4
allele num: 13820
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 6.188118811881188e-4
allele num: 6464
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.52e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.4e-2

MQ
type: SiteQuality
SIO_000300: 2.2e1

DP
type: SiteQuality
SIO_000300: 1.045484e6

FS
type: SiteQuality
SIO_000300: 2.327e0

QD
type: SiteQuality
SIO_000300: 1.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

VQSLOD
type: SiteQuality
SIO_000300: -6.381e0

GenotypeQuality
all individuals: 197
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 834
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 916
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 168
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.089514814660036e-5
allele num: 47858
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7010
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5774
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14122
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5616
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 2.2e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.985e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.72e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.95e-1

QD
type: SiteQuality
SIO_000300: 2.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3

DP
type: SiteQuality
SIO_000300: 1.077864e6

VQSLOD
type: SiteQuality
SIO_000300: -6.821e0

GenotypeQuality
all individuals: 73
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12604
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 200
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 174
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6140
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14550
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.957345406886691e-5
allele num: 50358
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7130
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 704
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.715854495538778e-4
allele num: 5828
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.797e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.713e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

FS
type: SiteQuality
SIO_000300: 4.578e0

QD
type: SiteQuality
SIO_000300: 7.2e-1

MQ
type: SiteQuality
SIO_000300: 2.2e1

DP
type: SiteQuality
SIO_000300: 1.124581e6

VQSLOD
type: SiteQuality
SIO_000300: -6.497e0

GenotypeQuality
all individuals: 59
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1092
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 539
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 782
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2834
bin: 6.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5994
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14896
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 4.036598493003229e-4
allele num: 7432
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52498
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.87e0

DP
type: SiteQuality
SIO_000300: 1.164451e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.313e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.93e-1

QD
type: SiteQuality
SIO_000300: 2.8e-1

MQ
type: SiteQuality
SIO_000300: 2.2e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.320000000000001e-1

GenotypeQuality
all individuals: 212
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37523
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 819
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 556
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 813
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15122
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6094
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6714
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.664878463872137e-4
allele num: 54058
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.637e0

QD
type: SiteQuality
SIO_000300: 1.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

FS
type: SiteQuality
SIO_000300: 2.344e0

DP
type: SiteQuality
SIO_000300: 1.19434e6

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

MQ
type: SiteQuality
SIO_000300: 2.2e1

VQSLOD
type: SiteQuality
SIO_000300: -6.227e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.2e-1

GenotypeQuality
all individuals: 120
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1086
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 522
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 861
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2973
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 799
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.514657980456026e-5
allele num: 15350
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7032
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6168
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 2.303902456314465e-4
allele num: 56426
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9680
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.243781094527363e-4
allele num: 8040
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.05e-1

QD
type: SiteQuality
SIO_000300: 1.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.885e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.21895e6

VQSLOD
type: SiteQuality
SIO_000300: -6.294e0

MQ
type: SiteQuality
SIO_000300: 2.2e1

GenotypeQuality
all individuals: 909
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 758
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 709
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1940
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12117
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8036
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.966439433665443e-4
allele num: 15256
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6158
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9656
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7036
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.3e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-2

DP
type: SiteQuality
SIO_000300: 1.182782e6

MQ
type: SiteQuality
SIO_000300: 2.2e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e0

GenotypeQuality
all individuals: 143
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 813
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34894
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8046
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.773426970277364e-5
allele num: 56388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7028
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6156
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15252
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e-1

FS
type: SiteQuality
SIO_000300: 2.244e0

MQRankSum
type: SiteQuality
SIO_000300: 3.71e-1

MQ
type: SiteQuality
SIO_000300: 2.25e1

VQSLOD
type: SiteQuality
SIO_000300: -1.004e0

DP
type: SiteQuality
SIO_000300: 1.184452e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.51e-1

QD
type: SiteQuality
SIO_000300: 8.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.05e-1

GenotypeQuality
all individuals: 54
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34894
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1948
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 756
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15252
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8046
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9646
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7028
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6156
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.546853940554728e-5
allele num: 56388
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.25e1

MQRankSum
type: SiteQuality
SIO_000300: 3.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.51e-1

DP
type: SiteQuality
SIO_000300: 1.184452e6

QD
type: SiteQuality
SIO_000300: 8.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.004e0

FS
type: SiteQuality
SIO_000300: 2.244e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.05e-1

GenotypeQuality
all individuals: 201
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 35264
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1934
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2637
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 914
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.964010920824026e-4
allele num: 8058
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6154
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7034
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15258
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.036269430051813e-4
allele num: 9650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56446
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.184956e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

MQ
type: SiteQuality
SIO_000300: 2.2e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.02e-1

QD
type: SiteQuality
SIO_000300: 2.29e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.03e0

GenotypeQuality
all individuals: 549
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 210
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2350
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 912
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6116
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7014
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.591957811470006e-5
allele num: 15170
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.555176336746302e-5
allele num: 56256
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8070
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.303e0

MQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

DP
type: SiteQuality
SIO_000300: 1.09061e6

VQSLOD
type: SiteQuality
SIO_000300: -6.72e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.684e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

MQ
type: SiteQuality
SIO_000300: 2.2e1

QD
type: SiteQuality
SIO_000300: 1.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

GenotypeQuality
all individuals: 75
bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 1965
bin: 6.75e1
variant carriers: 5

GenotypeQuality
all individuals: 550
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 215
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 191
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4076
bin: 2.75e1
variant carriers: 6

GenotypeQuality
all individuals: 869
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6452
bin: 3.75e1
variant carriers: 3

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7960
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 41
allele frequency: 7.394315394603953e-4
allele num: 55448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14856
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 20
allele frequency: 3.314550878355983e-3
allele num: 6034
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9438
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.577319587628866e-3
allele num: 776
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.025604e6

QD
type: SiteQuality
SIO_000300: 1.59e0

MQ
type: SiteQuality
SIO_000300: 2.2e1

MQRankSum
type: SiteQuality
SIO_000300: 1.91e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.248e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.69e0

GenotypeQuality
all individuals: 1916
bin: 6.75e1
variant carriers: 1913

GenotypeQuality
all individuals: 11034
bin: 2.5e0
variant carriers: 74

GenotypeQuality
all individuals: 2273
bin: 5.25e1
variant carriers: 2269

GenotypeQuality
all individuals: 1529
bin: 2.25e1
variant carriers: 592

GenotypeQuality
all individuals: 1126
bin: 4.75e1
variant carriers: 1121

GenotypeQuality
all individuals: 1957
bin: 8.25e1
variant carriers: 1955

GenotypeQuality
all individuals: 1526
bin: 8.75e1
variant carriers: 1525

GenotypeQuality
all individuals: 1177
bin: 6.25e1
variant carriers: 1139

European (Finnish)
type: Population
allele count: 2532
allele frequency: 4.954990215264188e-1
allele num: 5110
num of homozygotes: 1

Other
type: Population
allele count: 327
allele frequency: 4.90990990990991e-1
allele num: 666
num of homozygotes: 0

African
type: Population
allele count: 3053
allele frequency: 4.715786221810318e-1
allele num: 6474
num of homozygotes: 0

East Asian
type: Population
allele count: 2840
allele frequency: 4.95291245204046e-1
allele num: 5734
num of homozygotes: 0

Latino
type: Population
allele count: 3676
allele frequency: 4.894806924101198e-1
allele num: 7510
num of homozygotes: 0

South Asian
type: Population
allele count: 6529
allele frequency: 4.959738681251899e-1
allele num: 13164
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 23377
allele frequency: 4.931440384777656e-1
allele num: 47404
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.2e1

DP
type: SiteQuality
SIO_000300: 1.288685e6

MQRankSum
type: SiteQuality
SIO_000300: -3.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.432e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.7e-2

FS
type: SiteQuality
SIO_000300: 3.646e0

VQSLOD
type: SiteQuality
SIO_000300: 1.6438e2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.76e0

QD
type: SiteQuality
SIO_000300: 5.56e0

GenotypeQuality
all individuals: 504
bin: 3.75e1
variant carriers: 22

GenotypeQuality
all individuals: 5342
bin: 9.75e1
variant carriers: 93

GenotypeQuality
all individuals: 1829
bin: 2.75e1
variant carriers: 6

GenotypeQuality
all individuals: 302
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 558
bin: 8.25e1
variant carriers: 12

GenotypeQuality
all individuals: 597
bin: 6.75e1
variant carriers: 10

GenotypeQuality
all individuals: 18345
bin: 7.5e0
variant carriers: 7

Other
type: Population
allele count: 6
allele frequency: 1.293103448275862e-2
allele num: 464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.005429318318922e-4
allele num: 29838
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3340
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

East Asian
type: Population
allele count: 169
allele frequency: 5.409731113956466e-2
allele num: 3124
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 6.148800983808157e-4
allele num: 9758
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.74e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.565e0

MQ
type: SiteQuality
SIO_000300: 2.2e1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

QD
type: SiteQuality
SIO_000300: 3.64e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

FS
type: SiteQuality
SIO_000300: 1.345e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.02472e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

GenotypeQuality
all individuals: 5331
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1776
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3062
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.705075954057058e-5
allele num: 26990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 428
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9416
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2982
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2944
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4098
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

DP
type: SiteQuality
SIO_000300: 8.88315e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQ
type: SiteQuality
SIO_000300: 2.2e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.89e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

QD
type: SiteQuality
SIO_000300: 4.1e0

GenotypeQuality
all individuals: 332
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 575
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 545
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2594
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5140
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5096
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 1.086366105377512e-3
allele num: 7364
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.483679525222552e-3
allele num: 674
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13186
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.483679525222552e-4
allele num: 6740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5816
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.059591421547851e-4
allele num: 47188
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.11e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.04e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.147e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.13e-1

QD
type: SiteQuality
SIO_000300: 1.66e0

DP
type: SiteQuality
SIO_000300: 1.119077e6

MQRankSum
type: SiteQuality
SIO_000300: 1.08e-1

MQ
type: SiteQuality
SIO_000300: 2.268e1

GenotypeQuality
all individuals: 341
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 133
bin: 4.75e1
variant carriers: 11

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 14

GenotypeQuality
all individuals: 212
bin: 1.75e1
variant carriers: 9

GenotypeQuality
all individuals: 86
bin: 5.25e1
variant carriers: 8

GenotypeQuality
all individuals: 1080
bin: 7.75e1
variant carriers: 10

GenotypeQuality
all individuals: 679
bin: 3.75e1
variant carriers: 13

African
type: Population
allele count: 226
allele frequency: 3.365098272781417e-2
allele num: 6716
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.632253325716151e-4
allele num: 49012
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.721345638582912e-4
allele num: 13436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5288
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6068
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 7.820646506777894e-4
allele num: 7672
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.428571428571429e-3
allele num: 700
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.2e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.222e0

MQ
type: SiteQuality
SIO_000300: 2.277e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.14e-2

DP
type: SiteQuality
SIO_000300: 1.191825e6

FS
type: SiteQuality
SIO_000300: 1.516e0

QD
type: SiteQuality
SIO_000300: 1.51e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.33e-1

GenotypeQuality
all individuals: 140
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1559
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 22635
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2136
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55348
num of homozygotes: 0

African
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allele count: 3
allele frequency: 3.771687201408097e-4
allele num: 7954
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9270
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5882
num of homozygotes: 0

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -2.26e-1

DP
type: SiteQuality
SIO_000300: 1.452083e6

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 2.286e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.158e0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 59608
num of homozygotes: 0

South Asian
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allele frequency: 6.360513929525506e-5
allele num: 15722
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10452
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.68e-1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
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InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

VQSLOD
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 6.501e0

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 2.292e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 60254
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10626
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.303780964797914e-4
allele num: 7670
num of homozygotes: 0

VQSLOD
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
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MQRankSum
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQ
type: SiteQuality
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QD
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ReadPosRankSum
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DP
type: SiteQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7926
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6462
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8686
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61660
num of homozygotes: 0

South Asian
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allele frequency: 6.1667488899852e-5
allele num: 16216
num of homozygotes: 0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
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InbreedingCoeff
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QD
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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DP
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MQRankSum
type: SiteQuality
SIO_000300: -1.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.236e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16360
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.240694789081886e-4
allele num: 8060
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8768
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11128
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.993e0

MQRankSum
type: SiteQuality
SIO_000300: 3.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.93e-1

MQ
type: SiteQuality
SIO_000300: 2.292e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.648451e6

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 8.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11178
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.594438598169585e-5
allele num: 62718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.004e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e0

DP
type: SiteQuality
SIO_000300: 1.652139e6

FS
type: SiteQuality
SIO_000300: 5.283e0

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 2.304e1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.36e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.091617933723197e-5
allele num: 16416
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8118
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8796
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.363954561364432e-5
allele num: 62854
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.712e0

DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
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MQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.573465084809768e-5
allele num: 63554
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11346
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 2.452e1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 8.037000000000001e0

ReadPosRankSum
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
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DP
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BaseQRankSum
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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East Asian
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African
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VQSLOD
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DP
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InbreedingCoeff
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MQ
type: SiteQuality
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FS
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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allele num: 8364
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Other
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European (Finnish)
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Latino
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
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InbreedingCoeff
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QD
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FS
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

South Asian
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allele frequency: 4.244996967859309e-4
allele num: 16490
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Other
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 65216
num of homozygotes: 0

East Asian
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European (Finnish)
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
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MQ
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QD
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DP
type: SiteQuality
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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FS
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MQRankSum
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ReadPosRankSum
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SIO_000300: 3.7e-1

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
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GenotypeQuality
all individuals: 11284
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5825
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 611
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.097746882526906e-5
allele num: 65598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.88e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.48e-1

MQ
type: SiteQuality
SIO_000300: 2.325e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.570000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

DP
type: SiteQuality
SIO_000300: 1.703037e6

GenotypeQuality
all individuals: 527
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 359
bin: 8.25e1
variant carriers: 5

GenotypeQuality
all individuals: 476
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3568
num of homozygotes: 0

African
type: Population
allele count: 40
allele frequency: 7.633587786259542e-3
allele num: 5240
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3914
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 7.614213197969543e-4
allele num: 3940
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35282
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.33e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

FS
type: SiteQuality
SIO_000300: 8.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.07e-2

DP
type: SiteQuality
SIO_000300: 8.15131e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.63e-1

QD
type: SiteQuality
SIO_000300: 1.079e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.558e0

GenotypeQuality
all individuals: 6646
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1596
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3986
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3744
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10416
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 1.206e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.399999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.56824e5

VQSLOD
type: SiteQuality
SIO_000300: 3.36e-1

GenotypeQuality
all individuals: 240
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 370
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4130
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37574
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 4.526935264825713e-4
allele num: 4418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3996
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5578
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

QD
type: SiteQuality
SIO_000300: 1.414e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.166e0

VQSLOD
type: SiteQuality
SIO_000300: 6.2e-1

DP
type: SiteQuality
SIO_000300: 8.92631e5

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

GenotypeQuality
all individuals: 277
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 921
bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.40379913485048e-5
allele num: 10634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5630
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4088
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4166
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38030
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.668e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.95e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.6e-3

QD
type: SiteQuality
SIO_000300: 9.369999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.148e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.07397e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.342e0

GenotypeQuality
all individuals: 2471
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2187
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 656
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4880
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.312673450508788e-4
allele num: 4324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4298
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10770
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39626
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.48e-1

MQ
type: SiteQuality
SIO_000300: 5.845e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.725e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.9e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.022e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.95e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

DP
type: SiteQuality
SIO_000300: 9.52269e5

GenotypeQuality
all individuals: 599
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6276
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.352498353251153e-5
allele num: 42508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11126
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.74e1

MQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

DP
type: SiteQuality
SIO_000300: 1.015084e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

GenotypeQuality
all individuals: 383
bin: 8.25e1
variant carriers: 20

GenotypeQuality
all individuals: 3483
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 589
bin: 7.25e1
variant carriers: 9

African
type: Population
allele count: 28
allele frequency: 4.387339392040113e-3
allele num: 6382
num of homozygotes: 0

Other
type: Population
allele count: 22
allele frequency: 3.514376996805112e-2
allele num: 626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 169
allele frequency: 3.598807495741056e-2
allele num: 4696
num of homozygotes: 2

East Asian
type: Population
allele count: 106
allele frequency: 2.149229521492295e-2
allele num: 4932
num of homozygotes: 1

Latino
type: Population
allele count: 40
allele frequency: 7.034822370735139e-3
allele num: 5686
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1196
allele frequency: 2.726485204942324e-2
allele num: 43866
num of homozygotes: 15

South Asian
type: Population
allele count: 468
allele frequency: 4.081632653061224e-2
allele num: 11466
num of homozygotes: 10

VQSLOD
type: SiteQuality
SIO_000300: 5.47e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.24e-1

MQ
type: SiteQuality
SIO_000300: 6.017e1

QD
type: SiteQuality
SIO_000300: 1.427e1

DP
type: SiteQuality
SIO_000300: 1.044545e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-2

FS
type: SiteQuality
SIO_000300: 6.870000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

GenotypeQuality
all individuals: 1980
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41962
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5774
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4780
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.03e-1

FS
type: SiteQuality
SIO_000300: 3.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.054e0

QD
type: SiteQuality
SIO_000300: 1.209e1

DP
type: SiteQuality
SIO_000300: 9.93912e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 426
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10686
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4862
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5944
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 9.402030838661151e-5
allele num: 42544
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.9e-2

QD
type: SiteQuality
SIO_000300: 1.34e1

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

DP
type: SiteQuality
SIO_000300: 1.070073e6

GenotypeQuality
all individuals: 236
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3002
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9136
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8172
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7106
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5866
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.747946163258172e-5
allele num: 57210
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.695e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.414e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.277888e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 7.31e0

MQRankSum
type: SiteQuality
SIO_000300: -6.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.83e-1

GenotypeQuality
all individuals: 567
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3484
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2087
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 350
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10414
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.25281884239539e-4
allele num: 7982
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8846
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62082
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.57e-1

DP
type: SiteQuality
SIO_000300: 1.371618e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.08e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.41e-1

FS
type: SiteQuality
SIO_000300: 1.383e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.43e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.704e-1

QD
type: SiteQuality
SIO_000300: 7.54e0

GenotypeQuality
all individuals: 430
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63116
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.733099919202801e-5
allele num: 14852
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8994
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8164
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.545e0

QD
type: SiteQuality
SIO_000300: 4.25e0

FS
type: SiteQuality
SIO_000300: 5.008e0

VQSLOD
type: SiteQuality
SIO_000300: -2.028e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-2

DP
type: SiteQuality
SIO_000300: 1.394813e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.59e-1

GenotypeQuality
all individuals: 2083
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 867
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 886
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 615
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10782
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6384
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9052
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63518
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.666666666666667e-5
allele num: 15000
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8234
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

FS
type: SiteQuality
SIO_000300: 5.186e0

VQSLOD
type: SiteQuality
SIO_000300: 9.08e-1

QD
type: SiteQuality
SIO_000300: 1.39e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.41e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.403161e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

GenotypeQuality
all individuals: 46078
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 879
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3638
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10844
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15086
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9078
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8284
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.567742137773179e-5
allele num: 63786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.215e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

FS
type: SiteQuality
SIO_000300: 6.121e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

QD
type: SiteQuality
SIO_000300: 1.378e1

DP
type: SiteQuality
SIO_000300: 1.406915e6

VQSLOD
type: SiteQuality
SIO_000300: 1.72e-1

GenotypeQuality
all individuals: 425
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3133
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6170
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61268
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8790
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.27420998980632e-4
allele num: 7848
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.393339835585899e-4
allele num: 14354
num of homozygotes: 1

VQSLOD
type: SiteQuality
SIO_000300: -2.244e0

FS
type: SiteQuality
SIO_000300: 3.055e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.149999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.81e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.177e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

DP
type: SiteQuality
SIO_000300: 1.265909e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.34e-1