3-49155407-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155407
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155407
    reference: chr 3
allele count: 6
allele frequency: 4.975289395999867e-5
allele num: 120596
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.583A>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.271A>C
  hgvsp: ENSP00000303503.5:p.Thr91Pro
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000465902
  gene symbol: USP19
  hgvsc: ENST00000465902.1:n.608A>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.130A>C
  hgvsp: ENSP00000381872.2:p.Thr44Pro
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.271A>C
  hgvsp: ENSP00000395260.1:p.Thr91Pro
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.526A>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-267A>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.271A>C
  hgvsp: ENSP00000381863.2:p.Thr91Pro
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.271A>C
  hgvsp: ENSP00000401197.2:p.Thr91Pro
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.130A>C
  hgvsp: ENSP00000381867.3:p.Thr44Pro
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.271A>C
  hgvsp: ENSP00000400090.1:p.Thr91Pro
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13436
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30721
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr91Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

3-49155081-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155081
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155081
    reference: chr 3
allele count: 103
allele frequency: 8.530303281268117e-4
allele num: 120746
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000480163
  gene symbol: USP19
  hgvsc: ENST00000480163.1:n.132+9A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-111+9A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.472+9A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.472+9A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.427+9A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000464931
  gene symbol: USP19
  hgvsc: ENST00000464931.1:n.55+9A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.286+9A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.472+9A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.727+9A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.739+9A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.286+9A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.472+9A>G
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11310
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 41052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5641
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD

3-49155092-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155092
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155092
    reference: chr 3
allele count: 1
allele frequency: 8.282122210995345e-6
allele num: 120742
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.284C>T
  hgvsp: ENSP00000381867.3:p.Ala95Val
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.725C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.470C>T
  hgvsp: ENSP00000395260.1:p.Ala157Val
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.284C>T
  hgvsp: ENSP00000381872.2:p.Ala95Val
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-113C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.470C>T
  hgvsp: ENSP00000400090.1:p.Ala157Val
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000480163
  gene symbol: USP19
  hgvsc: ENST00000480163.1:n.130C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.737C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000464931
  gene symbol: USP19
  hgvsc: ENST00000464931.1:n.53C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.470C>T
  hgvsp: ENSP00000401197.2:p.Ala157Val
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.470C>T
  hgvsp: ENSP00000381863.2:p.Ala157Val
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.425C>T
  hgvsp: ENSP00000303503.5:p.Ala142Val
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11376
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala157Val
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

3-49155093-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155093
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155093
    reference: chr 3
allele count: 7
allele frequency: 5.797485547696742e-5
allele num: 120742
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.283G>A
  hgvsp: ENSP00000381872.2:p.Ala95Thr
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.424G>A
  hgvsp: ENSP00000303503.5:p.Ala142Thr
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000480163
  gene symbol: USP19
  hgvsc: ENST00000480163.1:n.129G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.283G>A
  hgvsp: ENSP00000381867.3:p.Ala95Thr
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.469G>A
  hgvsp: ENSP00000400090.1:p.Ala157Thr
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-114G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.736G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.469G>A
  hgvsp: ENSP00000381863.2:p.Ala157Thr
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.724G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000464931
  gene symbol: USP19
  hgvsc: ENST00000464931.1:n.52G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.469G>A
  hgvsp: ENSP00000401197.2:p.Ala157Thr
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.469G>A
  hgvsp: ENSP00000395260.1:p.Ala157Thr
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5703
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40944
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11364
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala157Thr
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

3-49155098-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155098
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155098
    reference: chr 3
allele count: 1
allele frequency: 8.281847845891375e-6
allele num: 120746
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-119G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.464G>A
  hgvsp: ENSP00000395260.1:p.Arg155Gln
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.278G>A
  hgvsp: ENSP00000381867.3:p.Arg93Gln
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.719G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.464G>A
  hgvsp: ENSP00000400090.1:p.Arg155Gln
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000464931
  gene symbol: USP19
  hgvsc: ENST00000464931.1:n.47G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.419G>A
  hgvsp: ENSP00000303503.5:p.Arg140Gln
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.278G>A
  hgvsp: ENSP00000381872.2:p.Arg93Gln
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.464G>A
  hgvsp: ENSP00000401197.2:p.Arg155Gln
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.464G>A
  hgvsp: ENSP00000381863.2:p.Arg155Gln
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.731G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000480163
  gene symbol: USP19
  hgvsc: ENST00000480163.1:n.124G>A
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11392
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5712
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg155Gln
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

3-49155099-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155099
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155099
    reference: chr 3
allele count: 1
allele frequency: 8.281985026171072e-6
allele num: 120744
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000464931
  gene symbol: USP19
  hgvsc: ENST00000464931.1:n.46C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.463C>T
  hgvsp: ENSP00000381863.2:p.Arg155Trp
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.463C>T
  hgvsp: ENSP00000395260.1:p.Arg155Trp
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.277C>T
  hgvsp: ENSP00000381872.2:p.Arg93Trp
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000480163
  gene symbol: USP19
  hgvsc: ENST00000480163.1:n.123C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.277C>T
  hgvsp: ENSP00000381867.3:p.Arg93Trp
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.463C>T
  hgvsp: ENSP00000401197.2:p.Arg155Trp
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-120C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.418C>T
  hgvsp: ENSP00000303503.5:p.Arg140Trp
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.463C>T
  hgvsp: ENSP00000400090.1:p.Arg155Trp
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.718C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.730C>T
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5729
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg155Trp
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP

3-49155109-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155109
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155109
    reference: chr 3
allele count: 16
allele frequency: 1.325007867234212e-4
allele num: 120754
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.453C>T
  hgvsp: ENST00000453664.1:c.453C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.453C>T
  hgvsp: ENST00000417901.1:c.453C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.453C>T
  hgvsp: ENST00000434032.2:c.453C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.408C>T
  hgvsp: ENST00000306026.5:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.267C>T
  hgvsp: ENST00000398898.2:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.453C>T
  hgvsp: ENST00000398888.2:c.453C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000464931
  gene symbol: USP19
  hgvsc: ENST00000464931.1:n.36C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.267C>T
  hgvsp: ENST00000398892.3:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-130C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.708C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.720C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000480163
  gene symbol: USP19
  hgvsc: ENST00000480163.1:n.113C>T
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11424
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40892
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp151Asp
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

3-49155116-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155116
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155116
    reference: chr 3
allele count: 1
allele frequency: 8.280750567231414e-6
allele num: 120762
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000480163
  gene symbol: USP19
  hgvsc: ENST00000480163.1:n.106A>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-137A>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.713A>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.401A>T
  hgvsp: ENSP00000303503.5:p.Asp134Val
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.446A>T
  hgvsp: ENSP00000395260.1:p.Asp149Val
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.446A>T
  hgvsp: ENSP00000400090.1:p.Asp149Val
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.701A>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.446A>T
  hgvsp: ENSP00000381863.2:p.Asp149Val
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.260A>T
  hgvsp: ENSP00000381867.3:p.Asp87Val
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.260A>T
  hgvsp: ENSP00000381872.2:p.Asp87Val
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.446A>T
  hgvsp: ENSP00000401197.2:p.Asp149Val
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000464931
  gene symbol: USP19
  hgvsc: ENST00000464931.1:n.29A>T
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40892
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11435
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp149Val
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ

3-49155126-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155126
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155126
    reference: chr 3
allele count: 1
allele frequency: 8.280887711162637e-6
allele num: 120760
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.703G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.436G>A
  hgvsp: ENSP00000395260.1:p.Ala146Thr
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000480163
  gene symbol: USP19
  hgvsc: ENST00000480163.1:n.96G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.691G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.436G>A
  hgvsp: ENSP00000400090.1:p.Ala146Thr
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.436G>A
  hgvsp: ENSP00000401197.2:p.Ala146Thr
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-147G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.436G>A
  hgvsp: ENSP00000381863.2:p.Ala146Thr
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.250G>A
  hgvsp: ENSP00000381867.3:p.Ala84Thr
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.250G>A
  hgvsp: ENSP00000381872.2:p.Ala84Thr
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.391G>A
  hgvsp: ENSP00000303503.5:p.Ala131Thr
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000464931
  gene symbol: USP19
  hgvsc: ENST00000464931.1:n.19G>A
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40876
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11455
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala146Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

3-49155128-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155128
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155128
    reference: chr 3
allele count: 2
allele frequency: 1.656150113446283e-5
allele num: 120762
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.434C>T
  hgvsp: ENSP00000401197.2:p.Ala145Val
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.701C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.434C>T
  hgvsp: ENSP00000395260.1:p.Ala145Val
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.689C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.434C>T
  hgvsp: ENSP00000381863.2:p.Ala145Val
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-149C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.248C>T
  hgvsp: ENSP00000381872.2:p.Ala83Val
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.434C>T
  hgvsp: ENSP00000400090.1:p.Ala145Val
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000480163
  gene symbol: USP19
  hgvsc: ENST00000480163.1:n.94C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.248C>T
  hgvsp: ENSP00000381867.3:p.Ala83Val
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.389C>T
  hgvsp: ENSP00000303503.5:p.Ala130Val
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000464931
  gene symbol: USP19
  hgvsc: ENST00000464931.1:n.17C>T
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40882
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5760
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala145Val
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

3-49155148-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155148
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155148
    reference: chr 3
allele count: 1
allele frequency: 8.280476292996373e-6
allele num: 120766
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.228G>C
  hgvsp: ENST00000398892.3:c.228G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.669G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.414G>C
  hgvsp: ENST00000453664.1:c.414G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.681G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.414G>C
  hgvsp: ENST00000417901.1:c.414G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.228G>C
  hgvsp: ENST00000398898.2:c.228G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.369G>C
  hgvsp: ENST00000306026.5:c.369G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.414G>C
  hgvsp: ENST00000398888.2:c.414G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000480163
  gene symbol: USP19
  hgvsc: ENST00000480163.1:n.74G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-169G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.414G>C
  hgvsp: ENST00000434032.2:c.414G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5764
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu138Leu
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

3-49155153-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155153
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155153
    reference: chr 3
allele count: 3
allele frequency: 2.484142887898912e-5
allele num: 120766
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000480163
  gene symbol: USP19
  hgvsc: ENST00000480163.1:n.69C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.409C>T
  hgvsp: ENSP00000381863.2:p.Pro137Ser
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.409C>T
  hgvsp: ENSP00000401197.2:p.Pro137Ser
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.364C>T
  hgvsp: ENSP00000303503.5:p.Pro122Ser
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.223C>T
  hgvsp: ENSP00000381872.2:p.Pro75Ser
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-174C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.223C>T
  hgvsp: ENSP00000381867.3:p.Pro75Ser
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.676C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.409C>T
  hgvsp: ENSP00000395260.1:p.Pro137Ser
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.409C>T
  hgvsp: ENSP00000400090.1:p.Pro137Ser
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.664C>T
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11485
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40852
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro137Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

3-49155162-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155162
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155162
    reference: chr 3
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.400G>A
  hgvsp: ENSP00000401197.2:p.Gly134Arg
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.655G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.400G>A
  hgvsp: ENSP00000395260.1:p.Gly134Arg
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.214G>A
  hgvsp: ENSP00000381867.3:p.Gly72Arg
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.400G>A
  hgvsp: ENSP00000400090.1:p.Gly134Arg
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-183G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.355G>A
  hgvsp: ENSP00000303503.5:p.Gly119Arg
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.400G>A
  hgvsp: ENSP00000381863.2:p.Gly134Arg
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000480163
  gene symbol: USP19
  hgvsc: ENST00000480163.1:n.60G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.214G>A
  hgvsp: ENSP00000381872.2:p.Gly72Arg
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.667G>A
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11484
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5769
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40853
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly134Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-49155167-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155167
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155167
    reference: chr 3
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.662G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.209G>C
  hgvsp: ENSP00000381872.2:p.Arg70Pro
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.350G>C
  hgvsp: ENSP00000303503.5:p.Arg117Pro
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.395G>C
  hgvsp: ENSP00000381863.2:p.Arg132Pro
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000480163
  gene symbol: USP19
  hgvsc: ENST00000480163.1:n.55G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.650G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.395G>C
  hgvsp: ENSP00000395260.1:p.Arg132Pro
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.209G>C
  hgvsp: ENSP00000381867.3:p.Arg70Pro
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.395G>C
  hgvsp: ENSP00000400090.1:p.Arg132Pro
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.395G>C
  hgvsp: ENSP00000401197.2:p.Arg132Pro
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-188G>C
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5773
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11487
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg132Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff

3-49155167-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155167
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155167
    reference: chr 3
allele count: 4
allele frequency: 3.312245371137094e-5
allele num: 120764
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.650G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.395G>A
  hgvsp: ENSP00000400090.1:p.Arg132His
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.350G>A
  hgvsp: ENSP00000303503.5:p.Arg117His
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.395G>A
  hgvsp: ENSP00000401197.2:p.Arg132His
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000480163
  gene symbol: USP19
  hgvsc: ENST00000480163.1:n.55G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.209G>A
  hgvsp: ENSP00000381872.2:p.Arg70His
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-188G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.395G>A
  hgvsp: ENSP00000395260.1:p.Arg132His
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.395G>A
  hgvsp: ENSP00000381863.2:p.Arg132His
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.662G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.209G>A
  hgvsp: ENSP00000381867.3:p.Arg70His
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5773
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11487
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg132His
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

3-49155168-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155168
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155168
    reference: chr 3
allele count: 2
allele frequency: 1.656122685568547e-5
allele num: 120764
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.208C>T
  hgvsp: ENSP00000381867.3:p.Arg70Cys
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-189C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.394C>T
  hgvsp: ENSP00000381863.2:p.Arg132Cys
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.349C>T
  hgvsp: ENSP00000303503.5:p.Arg117Cys
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.208C>T
  hgvsp: ENSP00000381872.2:p.Arg70Cys
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.661C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.649C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.394C>T
  hgvsp: ENSP00000395260.1:p.Arg132Cys
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.394C>T
  hgvsp: ENSP00000400090.1:p.Arg132Cys
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000480163
  gene symbol: USP19
  hgvsc: ENST00000480163.1:n.54C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.394C>T
  hgvsp: ENSP00000401197.2:p.Arg132Cys
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11486
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5773
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg132Cys
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum

3-49155176-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155176
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155176
    reference: chr 3
allele count: 3
allele frequency: 2.484184028352821e-5
allele num: 120764
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.653T>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.341T>C
  hgvsp: ENSP00000303503.5:p.Val114Ala
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.641T>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.200T>C
  hgvsp: ENSP00000381867.3:p.Val67Ala
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.386T>C
  hgvsp: ENSP00000400090.1:p.Val129Ala
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.386T>C
  hgvsp: ENSP00000381863.2:p.Val129Ala
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.386T>C
  hgvsp: ENSP00000401197.2:p.Val129Ala
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.200T>C
  hgvsp: ENSP00000381872.2:p.Val67Ala
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.386T>C
  hgvsp: ENSP00000395260.1:p.Val129Ala
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-197T>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000480163
  gene symbol: USP19
  hgvsc: ENST00000480163.1:n.46T>C
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5773
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11490
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Val129Ala
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

3-49155177-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155177
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155177
    reference: chr 3
allele count: 1
allele frequency: 8.280476292996373e-6
allele num: 120766
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.199G>C
  hgvsp: ENSP00000381872.2:p.Val67Leu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-198G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.385G>C
  hgvsp: ENSP00000400090.1:p.Val129Leu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.340G>C
  hgvsp: ENSP00000303503.5:p.Val114Leu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.199G>C
  hgvsp: ENSP00000381867.3:p.Val67Leu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.640G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.385G>C
  hgvsp: ENSP00000401197.2:p.Val129Leu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.385G>C
  hgvsp: ENSP00000395260.1:p.Val129Leu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000480163
  gene symbol: USP19
  hgvsc: ENST00000480163.1:n.45G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.652G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.385G>C
  hgvsp: ENSP00000381863.2:p.Val129Leu
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11491
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40832
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5774
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val129Leu
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

3-49155178-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155178
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155178
    reference: chr 3
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.339T>C
  hgvsp: ENST00000306026.5:c.339T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.198T>C
  hgvsp: ENST00000398898.2:c.198T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.651T>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.198T>C
  hgvsp: ENST00000398892.3:c.198T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.384T>C
  hgvsp: ENST00000434032.2:c.384T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.384T>C
  hgvsp: ENST00000453664.1:c.384T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000480163
  gene symbol: USP19
  hgvsc: ENST00000480163.1:n.44T>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.384T>C
  hgvsp: ENST00000417901.1:c.384T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.384T>C
  hgvsp: ENST00000398888.2:c.384T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.639T>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-199T>C
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11489
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40831
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile128Ile
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

3-49155182-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155182
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155182
    reference: chr 3
allele count: 1
allele frequency: 8.281024859636628e-6
allele num: 120758
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.635T>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-203T>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.380T>A
  hgvsp: ENSP00000381863.2:p.Val127Glu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.380T>A
  hgvsp: ENSP00000400090.1:p.Val127Glu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.194T>A
  hgvsp: ENSP00000381872.2:p.Val65Glu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.335T>A
  hgvsp: ENSP00000303503.5:p.Val112Glu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.380T>A
  hgvsp: ENSP00000401197.2:p.Val127Glu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.380T>A
  hgvsp: ENSP00000395260.1:p.Val127Glu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.647T>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.194T>A
  hgvsp: ENSP00000381867.3:p.Val65Glu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000480163
  gene symbol: USP19
  hgvsc: ENST00000480163.1:n.40T>A
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11489
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40827
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val127Glu
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

3-49155185-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155185
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155185
    reference: chr 3
allele count: 1
allele frequency: 8.281299170213822e-6
allele num: 120754
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.191A>G
  hgvsp: ENSP00000381867.3:p.Glu64Gly
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.332A>G
  hgvsp: ENSP00000303503.5:p.Glu111Gly
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.377A>G
  hgvsp: ENSP00000381863.2:p.Glu126Gly
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.644A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.191A>G
  hgvsp: ENSP00000381872.2:p.Glu64Gly
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000480163
  gene symbol: USP19
  hgvsc: ENST00000480163.1:n.37A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.377A>G
  hgvsp: ENSP00000395260.1:p.Glu126Gly
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.377A>G
  hgvsp: ENSP00000400090.1:p.Glu126Gly
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.377A>G
  hgvsp: ENSP00000401197.2:p.Glu126Gly
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-206A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.632A>G
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11493
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu126Gly
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

http://identifiers.org/exac.variant/3-49155193-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155193
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155193
    reference: chr 3
allele count: 1
allele frequency: 8.281299170213822e-6
allele num: 120754
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.369T>G
  hgvsp: ENSP00000381863.2:p.Ser123Arg
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.183T>G
  hgvsp: ENSP00000381867.3:p.Ser61Arg
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.183T>G
  hgvsp: ENSP00000381872.2:p.Ser61Arg
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.324T>G
  hgvsp: ENSP00000303503.5:p.Ser108Arg
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.369T>G
  hgvsp: ENSP00000401197.2:p.Ser123Arg
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-214T>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.624T>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000480163
  gene symbol: USP19
  hgvsc: ENST00000480163.1:n.29T>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.369T>G
  hgvsp: ENSP00000400090.1:p.Ser123Arg
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.369T>G
  hgvsp: ENSP00000395260.1:p.Ser123Arg
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.636T>G
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40804
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser123Arg
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

3-49155193-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155193
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155193
    reference: chr 3
allele count: 1
allele frequency: 8.281299170213822e-6
allele num: 120754
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.636T>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.183T>A
  hgvsp: ENSP00000381867.3:p.Ser61Arg
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.369T>A
  hgvsp: ENSP00000401197.2:p.Ser123Arg
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-214T>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.183T>A
  hgvsp: ENSP00000381872.2:p.Ser61Arg
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.369T>A
  hgvsp: ENSP00000395260.1:p.Ser123Arg
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.324T>A
  hgvsp: ENSP00000303503.5:p.Ser108Arg
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000480163
  gene symbol: USP19
  hgvsc: ENST00000480163.1:n.29T>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.369T>A
  hgvsp: ENSP00000381863.2:p.Ser123Arg
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.369T>A
  hgvsp: ENSP00000400090.1:p.Ser123Arg
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.624T>A
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11500
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40804
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser123Arg
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

3-49155207-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155207
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155207
    reference: chr 3
allele count: 2
allele frequency: 1.656342134031205e-5
allele num: 120748
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.355G>A
  hgvsp: ENSP00000400090.1:p.Asp119Asn
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.610G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.355G>A
  hgvsp: ENSP00000381863.2:p.Asp119Asn
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.169G>A
  hgvsp: ENSP00000381872.2:p.Asp57Asn
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.355G>A
  hgvsp: ENSP00000401197.2:p.Asp119Asn
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-228G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000480163
  gene symbol: USP19
  hgvsc: ENST00000480163.1:n.15G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.355G>A
  hgvsp: ENSP00000395260.1:p.Asp119Asn
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.310G>A
  hgvsp: ENSP00000303503.5:p.Asp104Asn
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.169G>A
  hgvsp: ENSP00000381867.3:p.Asp57Asn
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.622G>A
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40785
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11490
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp119Asn
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum

3-49155208-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155208
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155208
    reference: chr 3
allele count: 1
allele frequency: 8.281847845891375e-6
allele num: 120746
alternate allele: A
annotation: Annotation
  canonical: true
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.354C>T
  hgvsp: ENST00000434032.2:c.354C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.354C>T
  hgvsp: ENST00000398888.2:c.354C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.354C>T
  hgvsp: ENST00000453664.1:c.354C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.168C>T
  hgvsp: ENST00000398898.2:c.168C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.168C>T
  hgvsp: ENST00000398892.3:c.168C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.309C>T
  hgvsp: ENST00000306026.5:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.609C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.354C>T
  hgvsp: ENST00000417901.1:c.354C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000480163
  gene symbol: USP19
  hgvsc: ENST00000480163.1:n.14C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-229C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.621C>T
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11492
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu118Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP

3-49155208-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155208
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155208
    reference: chr 3
allele count: 2
allele frequency: 1.656369569178275e-5
allele num: 120746
alternate allele: T
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.354C>A
  hgvsp: ENST00000453664.1:c.354C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-229C>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000480163
  gene symbol: USP19
  hgvsc: ENST00000480163.1:n.14C>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.621C>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.168C>A
  hgvsp: ENST00000398898.2:c.168C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.309C>A
  hgvsp: ENST00000306026.5:c.309C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.168C>A
  hgvsp: ENST00000398892.3:c.168C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.609C>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.354C>A
  hgvsp: ENST00000398888.2:c.354C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.354C>A
  hgvsp: ENST00000434032.2:c.354C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.354C>A
  hgvsp: ENST00000417901.1:c.354C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11492
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5785
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu118Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

3-49155225-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155225
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155225
    reference: chr 3
allele count: 1
allele frequency: 8.283357078956959e-6
allele num: 120724
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.337A>C
  hgvsp: ENSP00000395260.1:p.Thr113Pro
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.337A>C
  hgvsp: ENSP00000400090.1:p.Thr113Pro
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.592A>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.611-7A>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-239-7A>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.337A>C
  hgvsp: ENSP00000401197.2:p.Thr113Pro
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.299-7A>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.158-7A>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.337A>C
  hgvsp: ENSP00000381863.2:p.Thr113Pro
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.158-7A>C
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40724
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5796
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11480
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr113Pro
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

3-49155228-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155228
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155228
    reference: chr 3
allele count: 2
allele frequency: 1.656698861847882e-5
allele num: 120722
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.334C>T
  hgvsp: ENSP00000395260.1:p.Pro112Ser
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.334C>T
  hgvsp: ENSP00000400090.1:p.Pro112Ser
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-239-10C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.299-10C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.334C>T
  hgvsp: ENSP00000381863.2:p.Pro112Ser
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.158-10C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.334C>T
  hgvsp: ENSP00000401197.2:p.Pro112Ser
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.158-10C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.589C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.611-10C>T
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40700
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11463
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5801
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro112Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

3-49155228-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155228
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155228
    reference: chr 3
allele count: 1
allele frequency: 8.28349430923941e-6
allele num: 120722
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.334C>G
  hgvsp: ENSP00000400090.1:p.Pro112Ala
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.334C>G
  hgvsp: ENSP00000381863.2:p.Pro112Ala
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.334C>G
  hgvsp: ENSP00000395260.1:p.Pro112Ala
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.589C>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.158-10C>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.334C>G
  hgvsp: ENSP00000401197.2:p.Pro112Ala
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.299-10C>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-239-10C>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.158-10C>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.611-10C>G
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5801
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11463
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40700
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41206
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro112Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD

3-49155248-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155248
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155248
    reference: chr 3
allele count: 1
allele frequency: 8.284592315212168e-6
allele num: 120706
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.158-30C>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.314C>G
  hgvsp: ENSP00000401197.2:p.Pro105Arg
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-239-30C>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.314C>G
  hgvsp: ENSP00000400090.1:p.Pro105Arg
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.314C>G
  hgvsp: ENSP00000381863.2:p.Pro105Arg
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.611-30C>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.314C>G
  hgvsp: ENSP00000395260.1:p.Pro105Arg
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.158-30C>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.569C>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.299-30C>G
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5810
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40497
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11463
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro105Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

3-49155265-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155265
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155265
    reference: chr 3
allele count: 1
allele frequency: 8.285141427364165e-6
allele num: 120698
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.158-47A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-239-47A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.299-2A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.158-47A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.299-2A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.299-2A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.611-47A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.299-47A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.554-2A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.299-2A>G
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5867
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40131
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3312
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.75e1
  variant carriers: 0
hgvs: c.299-2A>G
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

3-49155268-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155268
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155268
    reference: chr 3
allele count: 1
allele frequency: 8.2847295864263e-6
allele num: 120704
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.158-50A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.611-50A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.299-5A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.299-5A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.299-5A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.158-50A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.554-5A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.299-50A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.299-5A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-239-50A>G
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11519
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5882
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.75e1
  variant carriers: 0
hgvs: c.299-5A>G
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

3-49155277-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155277
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155277
    reference: chr 3
allele count: 2
allele frequency: 1.657193046417977e-5
allele num: 120686
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.611-59C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.299-14C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-239-59C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.299-14C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.299-59C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.299-14C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.158-59C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.158-59C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.299-14C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.554-14C>T
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5961
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11559
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39853
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40048
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1418
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

3-49155280-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155280
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155280
    reference: chr 3
allele count: 1
allele frequency: 8.286102548805144e-6
allele num: 120684
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.158-62C>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.299-17C>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.299-62C>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.611-62C>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.299-17C>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-239-62C>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.554-17C>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.158-62C>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.299-17C>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.299-17C>G
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6013
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11575
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39785
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40103
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1426
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/3-49155283-AAC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155283
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155281
    reference: chr 3
allele count: 3
allele frequency: 2.485913158766987e-5
allele num: 120680
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.299-22_299-21delGT
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.611-67_611-66delGT
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.158-67_158-66delGT
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.299-22_299-21delGT
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.158-67_158-66delGT
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.299-67_299-66delGT
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.554-22_554-21delGT
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-239-67_-239-66delGT
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.299-22_299-21delGT
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.299-22_299-21delGT
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39704
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
reference allele: AAC
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

3-49155295-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155295
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155295
    reference: chr 3
allele count: 1
allele frequency: 8.286102548805144e-6
allele num: 120684
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.299-32C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.299-32C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.299-32C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.611-77C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.299-32C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.299-77C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.158-77C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.158-77C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.554-32C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-239-77C>T
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11671
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6169
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

3-49155295-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155295
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155295
    reference: chr 3
allele count: 1
allele frequency: 8.286102548805144e-6
allele num: 120684
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.299-77C>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.158-77C>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.299-32C>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.299-32C>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.158-77C>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-239-77C>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.611-77C>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.299-32C>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.554-32C>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.299-32C>A
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6169
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11671
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

3-49155363-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155363
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155363
    reference: chr 3
allele count: 3
allele frequency: 2.484307457890989e-5
allele num: 120758
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-240+17C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.298+17C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.298+17C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.610+17C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.298+17C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.553+17C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.157+17C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.298+17C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.157+17C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.298+17C>T
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30773
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12183
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13464
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9320
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

3-49155366-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155366
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155366
    reference: chr 3
allele count: 1
allele frequency: 8.281436332317477e-6
allele num: 120752
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.157+14G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.298+14G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-240+14G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.553+14G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.157+14G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.298+14G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.298+14G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.298+14G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.298+14G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.610+14G>A
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13467
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30776
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12183
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD

3-49155370-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155370
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155370
    reference: chr 3
allele count: 2
allele frequency: 1.656259834042764e-5
allele num: 120754
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.553+10G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.298+10G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.157+10G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.610+10G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.298+10G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.298+10G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.298+10G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.298+10G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.157+10G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-240+10G>A
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30779
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

3-49155376-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155376
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155376
    reference: chr 3
allele count: 1
allele frequency: 8.281847845891375e-6
allele num: 120746
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.298+4A>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.610+4A>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.298+4A>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.157+4A>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.157+4A>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.298+4A>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.298+4A>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.298+4A>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.553+4A>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-240+4A>C
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30773
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12184
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
hgvs: c.298+4A>C
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ

3-49155377-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155377
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155377
    reference: chr 3
allele count: 1
allele frequency: 8.281710670156027e-6
allele num: 120748
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.553+3C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.157+3C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.298+3C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.610+3C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.298+3C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.157+3C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.298+3C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.298+3C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.298+3C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-240+3C>T
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30774
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13460
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12185
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: c.298+3C>T
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum

3-49155386-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155386
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155386
    reference: chr 3
allele count: 1
allele frequency: 8.282945415389712e-6
allele num: 120730
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.151A>G
  hgvsp: ENSP00000381872.2:p.Lys51Glu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.292A>G
  hgvsp: ENSP00000303503.5:p.Lys98Glu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.151A>G
  hgvsp: ENSP00000381867.3:p.Lys51Glu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.547A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.292A>G
  hgvsp: ENSP00000381863.2:p.Lys98Glu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.292A>G
  hgvsp: ENSP00000400090.1:p.Lys98Glu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.292A>G
  hgvsp: ENSP00000395260.1:p.Lys98Glu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-246A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.604A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.292A>G
  hgvsp: ENSP00000401197.2:p.Lys98Glu
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30766
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Lys98Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

3-49155400-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155400
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155400
    reference: chr 3
allele count: 25
allele frequency: 2.072178107852726e-4
allele num: 120646
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.533A>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.137A>T
  hgvsp: ENSP00000381867.3:p.Gln46Leu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.278A>T
  hgvsp: ENSP00000401197.2:p.Gln93Leu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.137A>T
  hgvsp: ENSP00000381872.2:p.Gln46Leu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-260A>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.278A>T
  hgvsp: ENSP00000400090.1:p.Gln93Leu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.278A>T
  hgvsp: ENSP00000395260.1:p.Gln93Leu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.278A>T
  hgvsp: ENSP00000381863.2:p.Gln93Leu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000465902
  gene symbol: USP19
  hgvsc: ENST00000465902.1:n.615A>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.278A>T
  hgvsp: ENSP00000303503.5:p.Gln93Leu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.590A>T
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12156
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13435
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30739
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
hgvs: p.Gln93Leu
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

3-49155400-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155400
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155400
    reference: chr 3
allele count: 1
allele frequency: 8.288712431410904e-6
allele num: 120646
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000465902
  gene symbol: USP19
  hgvsc: ENST00000465902.1:n.615A>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.137A>C
  hgvsp: ENSP00000381872.2:p.Gln46Pro
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.137A>C
  hgvsp: ENSP00000381867.3:p.Gln46Pro
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.278A>C
  hgvsp: ENSP00000303503.5:p.Gln93Pro
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.278A>C
  hgvsp: ENSP00000401197.2:p.Gln93Pro
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.278A>C
  hgvsp: ENSP00000395260.1:p.Gln93Pro
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.590A>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-260A>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.278A>C
  hgvsp: ENSP00000400090.1:p.Gln93Pro
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.278A>C
  hgvsp: ENSP00000381863.2:p.Gln93Pro
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.533A>C
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30739
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12156
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13435
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln93Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

3-49155400-TGAG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155400
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155397
    reference: chr 3
allele count: 2
allele frequency: 1.657742486282181e-5
allele num: 120646
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.134_136delCTC
  hgvsp: ENSP00000381867.3:p.Pro45del
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.275_277delCTC
  hgvsp: ENSP00000381863.2:p.Pro92del
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.530_532delCTC
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.134_136delCTC
  hgvsp: ENSP00000381872.2:p.Pro45del
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.275_277delCTC
  hgvsp: ENSP00000303503.5:p.Pro92del
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.275_277delCTC
  hgvsp: ENSP00000400090.1:p.Pro92del
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.587_589delCTC
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.275_277delCTC
  hgvsp: ENSP00000401197.2:p.Pro92del
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.275_277delCTC
  hgvsp: ENSP00000395260.1:p.Pro92del
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000465902
  gene symbol: USP19
  hgvsc: ENST00000465902.1:n.612_614delCTC
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-263_-261delCTC
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30739
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12156
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13435
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Pro92del
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: TGAG
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP

3-49155408-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155408
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155408
    reference: chr 3
allele count: 1
allele frequency: 8.292148993333113e-6
allele num: 120596
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.270C>T
  hgvsp: ENST00000453664.1:c.270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.270C>T
  hgvsp: ENST00000306026.5:c.270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.270C>T
  hgvsp: ENST00000417901.1:c.270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.-268C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000465902
  gene symbol: USP19
  hgvsc: ENST00000465902.1:n.607C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.129C>T
  hgvsp: ENST00000398892.3:c.129C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.270C>T
  hgvsp: ENST00000398888.2:c.270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.270C>T
  hgvsp: ENST00000434032.2:c.270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.525C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.582C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.129C>T
  hgvsp: ENST00000398898.2:c.129C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12145
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13436
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30720
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser90Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

3-49155418-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155418
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155418
    reference: chr 3
allele count: 4
allele frequency: 3.3208800332088e-5
allele num: 120450
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.572G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.260G>C
  hgvsp: ENSP00000381863.2:p.Gly87Ala
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.260G>C
  hgvsp: ENSP00000400090.1:p.Gly87Ala
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.260G>C
  hgvsp: ENSP00000395260.1:p.Gly87Ala
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.260G>C
  hgvsp: ENSP00000303503.5:p.Gly87Ala
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.125-6G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000465902
  gene symbol: USP19
  hgvsc: ENST00000465902.1:n.597G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.125-6G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.260G>C
  hgvsp: ENSP00000401197.2:p.Gly87Ala
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.515G>C
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13407
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2514
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30672
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly87Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

3-49155423-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155423
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155423
    reference: chr 3
allele count: 1
allele frequency: 8.307441806370146e-6
allele num: 120374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.567G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000465902
  gene symbol: USP19
  hgvsc: ENST00000465902.1:n.592G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.510G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.255G>A
  hgvsp: ENST00000453664.1:c.255G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.255G>A
  hgvsp: ENST00000434032.2:c.255G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.255G>A
  hgvsp: ENST00000417901.1:c.255G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.255G>A
  hgvsp: ENST00000398888.2:c.255G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.255G>A
  hgvsp: ENST00000306026.5:c.255G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.125-11G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.125-11G>A
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2514
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13384
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30634
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser85Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

3-49155424-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155424
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155424
    reference: chr 3
allele count: 4
allele frequency: 3.323252799840484e-5
allele num: 120364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.254C>T
  hgvsp: ENSP00000400090.1:p.Ser85Leu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.254C>T
  hgvsp: ENSP00000381863.2:p.Ser85Leu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.125-12C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.254C>T
  hgvsp: ENSP00000401197.2:p.Ser85Leu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.254C>T
  hgvsp: ENSP00000303503.5:p.Ser85Leu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.566C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.254C>T
  hgvsp: ENSP00000395260.1:p.Ser85Leu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000465902
  gene symbol: USP19
  hgvsc: ENST00000465902.1:n.591C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.125-12C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.509C>T
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12108
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30630
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13383
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser85Leu
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

3-49155441-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155441
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155441
    reference: chr 3
allele count: 12
allele frequency: 1.001619284509958e-4
allele num: 119806
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.125-29G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.237G>C
  hgvsp: ENST00000434032.2:c.237G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.237G>C
  hgvsp: ENST00000398888.2:c.237G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.237G>C
  hgvsp: ENST00000417901.1:c.237G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.237G>C
  hgvsp: ENST00000453664.1:c.237G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000465902
  gene symbol: USP19
  hgvsc: ENST00000465902.1:n.574G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.549G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.492G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.237G>C
  hgvsp: ENST00000306026.5:c.237G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.125-29G>C
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30315
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11988
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13167
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2284
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg79Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/3-49155442-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155442
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155442
    reference: chr 3
allele count: 1
allele frequency: 8.351149118118652e-6
allele num: 119744
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.125-30G>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.236G>T
  hgvsp: ENSP00000303503.5:p.Arg79Leu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.125-30G>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.236G>T
  hgvsp: ENSP00000400090.1:p.Arg79Leu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.236G>T
  hgvsp: ENSP00000395260.1:p.Arg79Leu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.236G>T
  hgvsp: ENSP00000381863.2:p.Arg79Leu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.236G>T
  hgvsp: ENSP00000401197.2:p.Arg79Leu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.491G>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.548G>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000465902
  gene symbol: USP19
  hgvsc: ENST00000465902.1:n.573G>T
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30297
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12009
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2209
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg79Leu
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

3-49155442-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155442
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155442
    reference: chr 3
allele count: 4
allele frequency: 3.340459647247461e-5
allele num: 119744
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.236G>A
  hgvsp: ENSP00000303503.5:p.Arg79Gln
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.236G>A
  hgvsp: ENSP00000401197.2:p.Arg79Gln
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000465902
  gene symbol: USP19
  hgvsc: ENST00000465902.1:n.573G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.125-30G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.236G>A
  hgvsp: ENSP00000400090.1:p.Arg79Gln
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.236G>A
  hgvsp: ENSP00000395260.1:p.Arg79Gln
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.125-30G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.491G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.548G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.236G>A
  hgvsp: ENSP00000381863.2:p.Arg79Gln
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30297
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12009
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg79Gln
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-49155443-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155443
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155443
    reference: chr 3
allele count: 8
allele frequency: 6.686615068287057e-5
allele num: 119642
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.235C>T
  hgvsp: ENSP00000303503.5:p.Arg79Trp
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.235C>T
  hgvsp: ENSP00000381863.2:p.Arg79Trp
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.235C>T
  hgvsp: ENSP00000395260.1:p.Arg79Trp
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.235C>T
  hgvsp: ENSP00000401197.2:p.Arg79Trp
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.547C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.125-31C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.490C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000465902
  gene symbol: USP19
  hgvsc: ENST00000465902.1:n.572C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.235C>T
  hgvsp: ENSP00000400090.1:p.Arg79Trp
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.125-31C>T
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12036
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13033
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30238
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg79Trp
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum

3-49155445-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155445
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155445
    reference: chr 3
allele count: 4
allele frequency: 3.348457198345862e-5
allele num: 119458
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.125-33C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.125-33C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.233C>T
  hgvsp: ENSP00000381863.2:p.Thr78Ile
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.233C>T
  hgvsp: ENSP00000303503.5:p.Thr78Ile
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.233C>T
  hgvsp: ENSP00000395260.1:p.Thr78Ile
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.233C>T
  hgvsp: ENSP00000400090.1:p.Thr78Ile
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.545C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.488C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.233C>T
  hgvsp: ENSP00000401197.2:p.Thr78Ile
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000465902
  gene symbol: USP19
  hgvsc: ENST00000465902.1:n.570C>T
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30141
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr78Ile
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ

3-49155448-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155448
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155448
    reference: chr 3
allele count: 15
allele frequency: 1.256828769648423e-4
allele num: 119348
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.230G>A
  hgvsp: ENSP00000400090.1:p.Arg77His
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.230G>A
  hgvsp: ENSP00000381863.2:p.Arg77His
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000465902
  gene symbol: USP19
  hgvsc: ENST00000465902.1:n.567G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.485G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.542G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.230G>A
  hgvsp: ENSP00000395260.1:p.Arg77His
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.230G>A
  hgvsp: ENSP00000303503.5:p.Arg77His
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.125-36G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.230G>A
  hgvsp: ENSP00000401197.2:p.Arg77His
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.125-36G>A
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30102
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12738
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12178
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43013
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg77His
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

3-49155449-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155449
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155449
    reference: chr 3
allele count: 1
allele frequency: 8.386025527061704e-6
allele num: 119246
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.229C>T
  hgvsp: ENSP00000303503.5:p.Arg77Cys
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.541C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.125-37C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.229C>T
  hgvsp: ENSP00000400090.1:p.Arg77Cys
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.484C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000465902
  gene symbol: USP19
  hgvsc: ENST00000465902.1:n.566C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.229C>T
  hgvsp: ENSP00000395260.1:p.Arg77Cys
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.125-37C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.229C>T
  hgvsp: ENSP00000381863.2:p.Arg77Cys
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.229C>T
  hgvsp: ENSP00000401197.2:p.Arg77Cys
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12608
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12263
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2217
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg77Cys
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum

3-49155451-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155451
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155451
    reference: chr 3
allele count: 4
allele frequency: 3.355873617799554e-5
allele num: 119194
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000465902
  gene symbol: USP19
  hgvsc: ENST00000465902.1:n.564A>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.539A>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.227A>C
  hgvsp: ENSP00000400090.1:p.His76Pro
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.227A>C
  hgvsp: ENSP00000381863.2:p.His76Pro
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.227A>C
  hgvsp: ENSP00000401197.2:p.His76Pro
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.482A>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.227A>C
  hgvsp: ENSP00000395260.1:p.His76Pro
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.227A>C
  hgvsp: ENSP00000303503.5:p.His76Pro
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.125-39A>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.125-39A>C
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12483
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30027
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42848
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His76Pro
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

3-49155455-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155455
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155455
    reference: chr 3
allele count: 3
allele frequency: 2.528572873470214e-5
allele num: 118644
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000465902
  gene symbol: USP19
  hgvsc: ENST00000465902.1:n.560C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.223C>T
  hgvsp: ENSP00000395260.1:p.Arg75Cys
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.478C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.535C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.223C>T
  hgvsp: ENSP00000401197.2:p.Arg75Cys
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.223C>T
  hgvsp: ENSP00000303503.5:p.Arg75Cys
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.223C>T
  hgvsp: ENSP00000381863.2:p.Arg75Cys
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.223C>T
  hgvsp: ENSP00000400090.1:p.Arg75Cys
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.125-43C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.125-43C>T
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11921
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12749
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1864
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg75Cys
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD

3-49155457-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155457
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155457
    reference: chr 3
allele count: 1
allele frequency: 8.427439743805831e-6
allele num: 118660
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.125-45C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.125-45C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000465902
  gene symbol: USP19
  hgvsc: ENST00000465902.1:n.558C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.221C>T
  hgvsp: ENSP00000400090.1:p.Ser74Leu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.221C>T
  hgvsp: ENSP00000395260.1:p.Ser74Leu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.533C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.221C>T
  hgvsp: ENSP00000381863.2:p.Ser74Leu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.221C>T
  hgvsp: ENSP00000303503.5:p.Ser74Leu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.221C>T
  hgvsp: ENSP00000401197.2:p.Ser74Leu
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.476C>T
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29668
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11801
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2057
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1889
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser74Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

3-49155459-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155459
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155459
    reference: chr 3
allele count: 10
allele frequency: 8.44124052470751e-5
allele num: 118466
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000465902
  gene symbol: USP19
  hgvsc: ENST00000465902.1:n.556C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.219C>T
  hgvsp: ENST00000306026.5:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.125-47C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.219C>T
  hgvsp: ENST00000417901.1:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.219C>T
  hgvsp: ENST00000398888.2:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.219C>T
  hgvsp: ENST00000434032.2:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.474C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.531C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.219C>T
  hgvsp: ENST00000453664.1:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.125-47C>T
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11656
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29458
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13053
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8320
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly73Gly
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

3-49155467-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155467
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155467
    reference: chr 3
allele count: 1
allele frequency: 8.522243054371911e-6
allele num: 117340
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.125-55A>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.211A>T
  hgvsp: ENSP00000400090.1:p.Ile71Phe
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.466A>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.211A>T
  hgvsp: ENSP00000381863.2:p.Ile71Phe
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.523A>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.211A>T
  hgvsp: ENSP00000303503.5:p.Ile71Phe
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.211A>T
  hgvsp: ENSP00000395260.1:p.Ile71Phe
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.211A>T
  hgvsp: ENSP00000401197.2:p.Ile71Phe
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000465902
  gene symbol: USP19
  hgvsc: ENST00000465902.1:n.548A>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.125-55A>T
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13680
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10852
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28330
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7799
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile71Phe
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

3-49155468-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155468
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155468
    reference: chr 3
allele count: 75
allele frequency: 6.397898077218364e-4
allele num: 117226
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.522G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.210G>C
  hgvsp: ENST00000417901.1:c.210G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.210G>C
  hgvsp: ENST00000306026.5:c.210G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.210G>C
  hgvsp: ENST00000453664.1:c.210G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.125-56G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.125-56G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000465902
  gene symbol: USP19
  hgvsc: ENST00000465902.1:n.547G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.210G>C
  hgvsp: ENST00000398888.2:c.210G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.210G>C
  hgvsp: ENST00000434032.2:c.210G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.465G>C
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 13708
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 10792
  bin: 3.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28211
  bin: 2.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly70Gly
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

3-49155486-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155486
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155486
    reference: chr 3
allele count: 7
allele frequency: 6.215040397762585e-5
allele num: 112630
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.192A>G
  hgvsp: ENST00000306026.5:c.192A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.447A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.504A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.192A>G
  hgvsp: ENST00000453664.1:c.192A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.192A>G
  hgvsp: ENST00000417901.1:c.192A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.125-74A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000465902
  gene symbol: USP19
  hgvsc: ENST00000465902.1:n.529A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.125-74A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.192A>G
  hgvsp: ENST00000434032.2:c.192A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.192A>G
  hgvsp: ENST00000398888.2:c.192A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8602
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5027
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24394
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3794
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7804
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser64Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

3-49155486-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155486
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155486
    reference: chr 3
allele count: 10
allele frequency: 8.878629139660837e-5
allele num: 112630
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.504A>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000465902
  gene symbol: USP19
  hgvsc: ENST00000465902.1:n.529A>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.447A>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.192A>C
  hgvsp: ENST00000434032.2:c.192A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.192A>C
  hgvsp: ENST00000398888.2:c.192A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.192A>C
  hgvsp: ENST00000417901.1:c.192A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.192A>C
  hgvsp: ENST00000453664.1:c.192A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.125-74A>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.192A>C
  hgvsp: ENST00000306026.5:c.192A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.125-74A>C
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24394
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5027
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8602
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3794
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser64Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
reference allele: T
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum

3-49155497-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155497
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155497
    reference: chr 3
allele count: 7
allele frequency: 6.51114335677345e-5
allele num: 107508
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.125-85C>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.181C>G
  hgvsp: ENSP00000303503.5:p.Pro61Ala
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.181C>G
  hgvsp: ENSP00000401197.2:p.Pro61Ala
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.181C>G
  hgvsp: ENSP00000381863.2:p.Pro61Ala
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.493C>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000465902
  gene symbol: USP19
  hgvsc: ENST00000465902.1:n.518C>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.181C>G
  hgvsp: ENSP00000395260.1:p.Pro61Ala
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.436C>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.125-85C>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.181C>G
  hgvsp: ENSP00000400090.1:p.Pro61Ala
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20242
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9075
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13238
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5773
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2519
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5300
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro61Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

3-49155502-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155502
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155502
    reference: chr 3
allele count: 226
allele frequency: 2.132477826004907e-3
allele num: 105980
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.431G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.176G>A
  hgvsp: ENSP00000401197.2:p.Gly59Asp
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000465902
  gene symbol: USP19
  hgvsc: ENST00000465902.1:n.513G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.125-90G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.176G>A
  hgvsp: ENSP00000381863.2:p.Gly59Asp
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.176G>A
  hgvsp: ENSP00000395260.1:p.Gly59Asp
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.176G>A
  hgvsp: ENSP00000400090.1:p.Gly59Asp
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.176G>A
  hgvsp: ENSP00000303503.5:p.Gly59Asp
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.488G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.125-90G>A
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10545
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 13255
  bin: 2.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 6462
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 3.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 1.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 6385
  bin: 3.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18592
  bin: 2.75e1
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly59Asp
num of homozygotes: 8
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP

3-49155503-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49155503
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49155503
    reference: chr 3
allele count: 3
allele frequency: 2.862486164650204e-5
allele num: 104804
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000303503
  ensembl transcript: ENST00000306026
  gene symbol: USP19
  hgvsc: ENST00000306026.5:c.175G>C
  hgvsp: ENSP00000303503.5:p.Gly59Arg
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.175G>C
  hgvsp: ENSP00000401197.2:p.Gly59Arg
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.175G>C
  hgvsp: ENSP00000400090.1:p.Gly59Arg
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.125-91G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000465902
  gene symbol: USP19
  hgvsc: ENST00000465902.1:n.512G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000491859
  gene symbol: USP19
  hgvsc: ENST00000491859.1:n.430G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.175G>C
  hgvsp: ENSP00000381863.2:p.Gly59Arg
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.175G>C
  hgvsp: ENSP00000395260.1:p.Gly59Arg
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000488993
  gene symbol: USP19
  hgvsc: ENST00000488993.1:n.487G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.125-91G>C
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6582
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6315
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10880
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18326
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13125
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly59Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44287
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2265
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 956
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9289
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2348
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66640
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.188516084399862e-4
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9758
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

QD
type: SiteQuality
SIO_000300: 1.352e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.9e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.09e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

DP
type: SiteQuality
SIO_000300: 1.685617e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.41e0

FS
type: SiteQuality
SIO_000300: 5.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-2

GenotypeDepth
all individuals: 225
bin: 4.75e1
variant carriers: 7

GenotypeQuality
all individuals: 44
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1355
bin: 9.75e1
variant carriers: 104

GenotypeQuality
all individuals: 2233
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2794
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41389
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3205
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7277
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 938
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.11358574610245e-3
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 93
allele frequency: 9.48205546492659e-3
allele num: 9808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.494454103963068e-5
allele num: 66716
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.456619426201175e-4
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.59e0

DP
type: SiteQuality
SIO_000300: 1.479209e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.61e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.458e1

GenotypeDepth
all individuals: 98
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 63
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 35
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 869
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2813
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7301
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1337
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 946
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3233
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2246
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41367
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9812
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.478457e6

MQRankSum
type: SiteQuality
SIO_000300: -7.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.68e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.198e0

FS
type: SiteQuality
SIO_000300: 3.145e0

VQSLOD
type: SiteQuality
SIO_000300: 4.28e-1

QD
type: SiteQuality
SIO_000300: 1.455e1

GenotypeDepth
all individuals: 63
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 114
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 37
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41347
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1343
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 947
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2247
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7299
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2813
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3231
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 871
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9812
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.050129645635263e-4
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Other
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European (Non-Finnish)
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East Asian
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European (Finnish)
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num of homozygotes: 0

South Asian
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ReadPosRankSum
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InbreedingCoeff
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FS
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MQ
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QD
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VQSLOD
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DP
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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Latino
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South Asian
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Other
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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MQRankSum
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MQ
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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QD
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FS
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BaseQRankSum
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DP
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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Latino
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European (Finnish)
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East Asian
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Other
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European (Non-Finnish)
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FS
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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MQ
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VQSLOD
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QD
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DP
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 3

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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African
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Latino
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East Asian
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Other
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MQ
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FS
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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QD
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VQSLOD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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European (Non-Finnish)
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Other
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African
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East Asian
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European (Finnish)
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ReadPosRankSum
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InbreedingCoeff
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QD
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ClippingRankSum
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VQSLOD
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MQRankSum
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FS
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DP
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BaseQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele num: 6614
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Latino
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European (Non-Finnish)
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East Asian
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African
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South Asian
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DP
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MQ
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BaseQRankSum
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ReadPosRankSum
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FS
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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South Asian
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European (Non-Finnish)
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MQ
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MQRankSum
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VQSLOD
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FS
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DP
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

South Asian
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FS
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ReadPosRankSum
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DP
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MQRankSum
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BaseQRankSum
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VQSLOD
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SIO_000300: 1.1e-1

MQ
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SIO_000300: 5.93e1

InbreedingCoeff
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SIO_000300: 3.2e-3

ClippingRankSum
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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Latino
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Other
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African
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MQ
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ClippingRankSum
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VQSLOD
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DP
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InbreedingCoeff
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MQRankSum
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FS
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ReadPosRankSum
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QD
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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East Asian
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European (Non-Finnish)
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allele num: 66738
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InbreedingCoeff
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DP
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FS
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VQSLOD
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QD
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ClippingRankSum
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MQ
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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SIO_000300: -4.29e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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ClippingRankSum
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MQRankSum
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MQ
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DP
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QD
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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FS
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InbreedingCoeff
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SIO_000300: 3.8e-3

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
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African
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allele frequency: 2.039567611666327e-4
allele num: 9806
num of homozygotes: 0

Other
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South Asian
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allele frequency: 0.0e0
allele num: 16512
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Latino
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allele frequency: 0.0e0
allele num: 11570
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European (Non-Finnish)
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allele frequency: 2.996703626011388e-5
allele num: 66740
num of homozygotes: 0

VQSLOD
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ClippingRankSum
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InbreedingCoeff
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DP
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MQRankSum
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FS
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QD
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BaseQRankSum
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
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European (Finnish)
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South Asian
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East Asian
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Other
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DP
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InbreedingCoeff
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MQRankSum
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VQSLOD
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QD
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ReadPosRankSum
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ClippingRankSum
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FS
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MQ
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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South Asian
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East Asian
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Latino
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African
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FS
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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QD
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MQRankSum
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BaseQRankSum
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MQ
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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South Asian
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BaseQRankSum
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ReadPosRankSum
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DP
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VQSLOD
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MQ
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FS
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MQRankSum
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InbreedingCoeff
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SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.429e0

QD
type: SiteQuality
SIO_000300: 1.202e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 7.5e0
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9806
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.482723e6

ClippingRankSum
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SIO_000300: -1.006e0

MQRankSum
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VQSLOD
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ReadPosRankSum
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SIO_000300: 1.57e0

MQ
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FS
type: SiteQuality
SIO_000300: 6.598e0

InbreedingCoeff
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SIO_000300: 1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.61e0

QD
type: SiteQuality
SIO_000300: 1.269e1

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.018e1

InbreedingCoeff
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SIO_000300: 2.3e-3

MQRankSum
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SIO_000300: 5.51e-1

FS
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SIO_000300: 4.109e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
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SIO_000300: -2.208e0

DP
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SIO_000300: 1.482757e6

BaseQRankSum
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SIO_000300: 2.36e0

VQSLOD
type: SiteQuality
SIO_000300: 5.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
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SIO_000300: 1.327e1

MQRankSum
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SIO_000300: 1.28e0

ReadPosRankSum
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SIO_000300: 7.46e-1

BaseQRankSum
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SIO_000300: 1.12e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: 5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.482738e6

MQ
type: SiteQuality
SIO_000300: 5.982e1

VQSLOD
type: SiteQuality
SIO_000300: 6.46e-1

GenotypeQuality
all individuals: 41389
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 9.25e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.797e0

BaseQRankSum
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SIO_000300: 2.68e0

QD
type: SiteQuality
SIO_000300: 1.004e1

VQSLOD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 1.4e-3

MQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e0

DP
type: SiteQuality
SIO_000300: 1.482725e6

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.25e1
variant carriers: 0

Latino
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allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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QD
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VQSLOD
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SIO_000300: 4.27e-1

FS
type: SiteQuality
SIO_000300: 2.797e0

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.17e-1

DP
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BaseQRankSum
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MQRankSum
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MQ
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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FS
type: SiteQuality
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QD
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020408163265306e-4
allele num: 9800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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BaseQRankSum
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FS
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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QD
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DP
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SIO_000300: 1.482958e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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South Asian
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European (Non-Finnish)
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European (Finnish)
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allele frequency: 0.0e0
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Other
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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MQRankSum
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MQ
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FS
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DP
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QD
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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Latino
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Other
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BaseQRankSum
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MQ
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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QD
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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South Asian
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Latino
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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Other
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MQRankSum
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DP
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VQSLOD
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BaseQRankSum
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QD
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ClippingRankSum
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InbreedingCoeff
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MQ
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FS
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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allele num: 66718
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Other
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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African
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East Asian
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MQRankSum
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MQ
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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VQSLOD
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DP
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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Other
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African
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South Asian
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQ
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FS
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QD
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InbreedingCoeff
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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Other
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East Asian
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South Asian
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European (Non-Finnish)
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MQ
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VQSLOD
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DP
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MQRankSum
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QD
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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FS
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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European (Finnish)
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Other
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African
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European (Non-Finnish)
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FS
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VQSLOD
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DP
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Finnish)
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African
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European (Non-Finnish)
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East Asian
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MQRankSum
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FS
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VQSLOD
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ClippingRankSum
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QD
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BaseQRankSum
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DP
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

East Asian
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allele frequency: 1.160362032954282e-4
allele num: 8618
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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MQRankSum
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FS
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VQSLOD
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ClippingRankSum
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DP
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MQ
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QD
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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SIO_000300: -1.895e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.498695378340282e-5
allele num: 66686
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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QD
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ClippingRankSum
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DP
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MQRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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FS
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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Other
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FS
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MQ
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MQRankSum
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VQSLOD
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ReadPosRankSum
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DP
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QD
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
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allele frequency: 1.020408163265306e-4
allele num: 9800
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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FS
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MQ
type: SiteQuality
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QD
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VQSLOD
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.495594317568783e-5
allele num: 66732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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Latino
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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ReadPosRankSum
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InbreedingCoeff
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QD
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FS
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BaseQRankSum
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MQRankSum
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MQ
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SIO_000300: 5.975e1

VQSLOD
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 8624
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African
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allele frequency: 0.0e0
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European (Finnish)
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Other
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Latino
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European (Non-Finnish)
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allele num: 66728
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South Asian
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DP
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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MQ
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InbreedingCoeff
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

Other
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East Asian
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South Asian
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allele num: 16512
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African
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European (Non-Finnish)
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Latino
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VQSLOD
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QD
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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FS
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DP
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InbreedingCoeff
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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East Asian
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Latino
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European (Finnish)
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African
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Other
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MQRankSum
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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FS
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ClippingRankSum
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BaseQRankSum
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QD
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.46e-1

DP
type: SiteQuality
SIO_000300: 1.690217e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.41e-1

FS
type: SiteQuality
SIO_000300: 4.218e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.96e-1

QD
type: SiteQuality
SIO_000300: 1.523e1

MQ
type: SiteQuality
SIO_000300: 5.972e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.242e0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 229
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.342e0

MQ
type: SiteQuality
SIO_000300: 5.826e1

ClippingRankSum
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SIO_000300: -1.774e0

FS
type: SiteQuality
SIO_000300: 2.656e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.24e-1

QD
type: SiteQuality
SIO_000300: 6.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 1.68979e6

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 25

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.999520038396928e-5
allele num: 66672
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

East Asian
type: Population
allele count: 20
allele frequency: 2.320185614849188e-3
allele num: 8620
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.689254e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

VQSLOD
type: SiteQuality
SIO_000300: 3.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.72e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

FS
type: SiteQuality
SIO_000300: 1.755e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.211e1

MQ
type: SiteQuality
SIO_000300: 5.949e1

GenotypeQuality
all individuals: 505
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 960
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variant carriers: 0

GenotypeQuality
all individuals: 2351
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499880009599232e-5
allele num: 66672
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.689254e6

MQ
type: SiteQuality
SIO_000300: 5.949e1

MQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.72e-1

QD
type: SiteQuality
SIO_000300: 1.211e1

VQSLOD
type: SiteQuality
SIO_000300: 3.15e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

FS
type: SiteQuality
SIO_000300: 1.755e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 9
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2262
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variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728608470181504e-4
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66672
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.755e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.72e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

VQSLOD
type: SiteQuality
SIO_000300: 3.15e0

QD
type: SiteQuality
SIO_000300: 1.211e1

DP
type: SiteQuality
SIO_000300: 1.689254e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9758
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500600240096038e-5
allele num: 66640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.97e-1

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

VQSLOD
type: SiteQuality
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DP
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FS
type: SiteQuality
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BaseQRankSum
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QD
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SIO_000300: 1.374e1

MQRankSum
type: SiteQuality
SIO_000300: -3.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.72e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.642525533890436e-4
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9718
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
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BaseQRankSum
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MQ
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9714
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503442884204829e-5
allele num: 66514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

FS
type: SiteQuality
SIO_000300: 1.273e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.04e0

MQRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.205e0

VQSLOD
type: SiteQuality
SIO_000300: 1.45e0

QD
type: SiteQuality
SIO_000300: 1.351e1

DP
type: SiteQuality
SIO_000300: 1.680956e6

GenotypeQuality
all individuals: 9247
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44162
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 952
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 9.75e1
variant carriers: 4

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.73370319001387e-4
allele num: 11536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503533303262667e-5
allele num: 66510
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.267e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.76e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.419999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.952e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.992e0

VQSLOD
type: SiteQuality
SIO_000300: 6.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.680714e6

GenotypeQuality
all individuals: 112
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 12

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 942
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GenotypeQuality
all individuals: 69
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.021148036253776e-5
allele num: 66200
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.242152466367713e-3
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 6.965000870625109e-4
allele num: 11486
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.51e0

DP
type: SiteQuality
SIO_000300: 1.667434e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.85e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.499e1

MQ
type: SiteQuality
SIO_000300: 5.96e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 157
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 936
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 11
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 75
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 2.75e1
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GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511213201958532e-5
allele num: 66172
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.665069e6

FS
type: SiteQuality
SIO_000300: 1.554e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.47e-1

QD
type: SiteQuality
SIO_000300: 1.217e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.2e-2

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 58
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GenotypeQuality
all individuals: 9069
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 75
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 69
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 224
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variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 9.75e1
variant carriers: 4

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.533639605875597e-5
allele num: 66172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.041232819658476e-4
allele num: 9604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

DP
type: SiteQuality
SIO_000300: 1.665069e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.14e0

FS
type: SiteQuality
SIO_000300: 1.554e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

MQRankSum
type: SiteQuality
SIO_000300: 2.47e-1

QD
type: SiteQuality
SIO_000300: 1.217e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-2

GenotypeQuality
all individuals: 271
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 2195
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variant carriers: 0

GenotypeQuality
all individuals: 909
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variant carriers: 0

GenotypeQuality
all individuals: 116
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GenotypeQuality
all individuals: 114
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GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 137
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GenotypeQuality
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GenotypeQuality
all individuals: 56
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variant carriers: 0

GenotypeQuality
all individuals: 86
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GenotypeQuality
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variant carriers: 8

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 60
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GenotypeQuality
all individuals: 219
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variant carriers: 0

GenotypeQuality
all individuals: 931
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GenotypeQuality
all individuals: 2273
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9598
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.123595505617978e-3
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.654080389768575e-4
allele num: 16420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512447442451375e-5
allele num: 66118
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.921e1

FS
type: SiteQuality
SIO_000300: 6.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.8e-2

QD
type: SiteQuality
SIO_000300: 1.354e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.011e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.389999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.661363e6

MQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

GenotypeQuality
all individuals: 218
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2174
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variant carriers: 0

GenotypeQuality
all individuals: 12
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 85
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GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.059687926071807e-5
allele num: 66010
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.81e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.327e0

DP
type: SiteQuality
SIO_000300: 1.652699e6

QD
type: SiteQuality
SIO_000300: 1.351e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.21e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

GenotypeQuality
all individuals: 201
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2229
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GenotypeQuality
all individuals: 2156
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GenotypeQuality
all individuals: 214
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9556
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.621919244887258e-4
allele num: 11442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.667879670063076e-4
allele num: 65952
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.095330976472023e-5
allele num: 16406
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.649064e6

VQSLOD
type: SiteQuality
SIO_000300: 4.07e0

MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.28e0

FS
type: SiteQuality
SIO_000300: 1.731e0

MQ
type: SiteQuality
SIO_000300: 5.996e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.07e-1

QD
type: SiteQuality
SIO_000300: 1.423e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.25e-1

GenotypeQuality
all individuals: 8742
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 241
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GenotypeQuality
all individuals: 13
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 261
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GenotypeQuality
all individuals: 264
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GenotypeQuality
all individuals: 112
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GenotypeQuality
all individuals: 366
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GenotypeQuality
all individuals: 209
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517634917744187e-5
allele num: 65892
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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QD
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MQRankSum
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SIO_000300: -7.2e-1

FS
type: SiteQuality
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DP
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SIO_000300: 1.643329e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.32e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65860
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9550
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South Asian
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allele frequency: 0.0e0
allele num: 16402
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6554
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East Asian
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allele count: 4
allele frequency: 4.690431519699812e-4
allele num: 8528
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ClippingRankSum
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SIO_000300: 9.87e-1

BaseQRankSum
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MQRankSum
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InbreedingCoeff
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QD
type: SiteQuality
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
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DP
type: SiteQuality
SIO_000300: 1.640189e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.96e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 1
allele frequency: 8.809020436927414e-5
allele num: 11352
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16344
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.049524274213223e-5
allele num: 65584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.72e-1

MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.563e0

VQSLOD
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SIO_000300: 2.26e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.73e-1

MQRankSum
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SIO_000300: 1.81e-1

FS
type: SiteQuality
SIO_000300: 9.5e-1

InbreedingCoeff
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SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.621575e6

QD
type: SiteQuality
SIO_000300: 1.373e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65586
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9486
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.182312603452353e-4
allele num: 8458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.0e-2

QD
type: SiteQuality
SIO_000300: 1.437e1

VQSLOD
type: SiteQuality
SIO_000300: 4.43e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

MQRankSum
type: SiteQuality
SIO_000300: 7.17e-1

FS
type: SiteQuality
SIO_000300: 1.742e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.619183e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.401e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9478
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16344
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 8.819897689186806e-4
allele num: 11338
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8438
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65462
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.78e-1

FS
type: SiteQuality
SIO_000300: 2.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
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ClippingRankSum
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MQ
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BaseQRankSum
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SIO_000300: -3.486e0

DP
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SIO_000300: 1.613049e6

VQSLOD
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SIO_000300: 1.07e0

QD
type: SiteQuality
SIO_000300: 1.277e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
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allele num: 64870
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Other
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African
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allele frequency: 0.0e0
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Latino
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East Asian
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allele frequency: 0.0e0
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South Asian
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VQSLOD
type: SiteQuality
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BaseQRankSum
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MQ
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MQRankSum
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DP
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QD
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ClippingRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 9326
num of homozygotes: 0

South Asian
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Latino
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European (Finnish)
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allele frequency: 6.174745291756715e-4
allele num: 6478
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East Asian
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European (Non-Finnish)
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allele count: 70
allele frequency: 1.07994692832238e-3
allele num: 64818
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Other
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BaseQRankSum
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QD
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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MQ
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FS
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DP
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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African
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Latino
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East Asian
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Other
type: Population
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European (Non-Finnish)
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allele frequency: 0.0e0
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FS
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MQRankSum
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VQSLOD
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MQ
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ReadPosRankSum
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QD
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 164
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 604
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6236
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.28456510809452e-4
allele num: 15912
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10672
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8858
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.931e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.565e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

QD
type: SiteQuality
SIO_000300: 1.353e1

DP
type: SiteQuality
SIO_000300: 1.461231e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.17e-1

GenotypeQuality
all individuals: 128
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 885
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31495
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 753
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1326
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13318
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 788
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1324
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 471
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1212
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9974
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 9.418729817007535e-4
allele num: 7432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5980
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59316
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.17e-1

DP
type: SiteQuality
SIO_000300: 1.3385e6

FS
type: SiteQuality
SIO_000300: 6.301e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 1.511e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.29e-1

MQ
type: SiteQuality
SIO_000300: 5.933e1

VQSLOD
type: SiteQuality
SIO_000300: 2.5e-2

GenotypeQuality
all individuals: 928
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1005
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1436
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 110
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 457
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1430
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15336
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4661
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 303
bin: 9.75e1
variant carriers: 208

GenotypeQuality
all individuals: 201
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30188
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 76
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1111
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 395
bin: 8.25e1
variant carriers: 1

East Asian
type: Population
allele count: 211
allele frequency: 2.926490984743412e-2
allele num: 7210
num of homozygotes: 8

Other
type: Population
allele count: 1
allele frequency: 1.25e-3
allele num: 800
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8304
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.868471953578336e-4
allele num: 15510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.025711159737418e-4
allele num: 58496
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.049180327868852e-4
allele num: 9760
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.15e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.16e0

QD
type: SiteQuality
SIO_000300: 1.391e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.424e0

MQRankSum
type: SiteQuality
SIO_000300: 1.83e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.291411e6

GenotypeQuality
all individuals: 602
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4374
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 929
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 916
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29683
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 552
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15739
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 975
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1439
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 867
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 862
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1420
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7094
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.190491020450534e-5
allele num: 57798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5888
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -7.05e-1

DP
type: SiteQuality
SIO_000300: 1.281613e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.023e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.3e0