1-154228112-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154228112
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154228112
    reference: chr 1
allele count: 54
allele frequency: 4.448838358872961e-4
allele num: 121380
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2085-47C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2118-47C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.81-47C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2085-47C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.420-47C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.76-47C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2085-47C>T
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11816
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4649
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4222
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4937
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1614
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1994
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

1-154228113-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154228113
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154228113
    reference: chr 1
allele count: 3
allele frequency: 2.471495419495156e-5
allele num: 121384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.81-46G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.420-46G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.76-46G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2085-46G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2085-46G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2118-46G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2085-46G>A
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3873
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5036
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11815
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4649
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3692
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4938
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1620
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1391
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genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum

1-154228118-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154228118
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154228118
    reference: chr 1
allele count: 3
allele frequency: 2.471413978317461e-5
allele num: 121388
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.420-41T>C
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2085-41T>C
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2085-41T>C
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2118-41T>C
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2085-41T>C
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.76-41T>C
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.81-41T>C
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4939
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3692
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11815
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2927
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5035
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4400
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50891
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1393
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

1-154228119-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154228119
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154228119
    reference: chr 1
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2085-40A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2118-40A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2085-40A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.420-40A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.76-40A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.81-40A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2085-40A>G
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5035
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4939
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4656
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11815
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3692
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 50889
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: A
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

1-154228144-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154228144
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154228145
    reference: chr 1
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.81-8dupT
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2085-8dupT
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.76-8dupT
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.420-8dupT
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2085-8dupT
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2118-8dupT
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2085-8dupT
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3885
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5034
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4659
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4939
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11815
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4218
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2010
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

1-154228144-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154228144
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154228144
    reference: chr 1
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.76-15C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.420-15C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2085-15C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2118-15C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2085-15C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.81-15C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2085-15C>T
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4659
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5034
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4939
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11815
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3885
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1631
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

1-154228145-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154228145
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154228145
    reference: chr 1
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.81-14T>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.420-14T>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2118-14T>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.76-14T>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2085-14T>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2085-14T>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2085-14T>G
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11816
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4938
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50888
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

1-154228160-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154228160
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154228160
    reference: chr 1
allele count: 6
allele frequency: 4.941932295527551e-5
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2086A>G
  hgvsp: ENSP00000389445.1:p.Thr696Ala
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2119A>G
  hgvsp: ENSP00000271877.7:p.Thr707Ala
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.421A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2086A>G
  hgvsp: ENSP00000345308.6:p.Thr696Ala
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2086A>G
  hgvsp: ENSP00000355343.2:p.Thr696Ala
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.82A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.77A>G
  hgvsp: ENSP00000407672.1:p.Thr27Ala
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4659
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4938
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11820
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2444
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1645
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr696Ala
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

1-154228161-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154228161
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154228161
    reference: chr 1
allele count: 30
allele frequency: 2.470966147763776e-4
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2120C>T
  hgvsp: ENSP00000271877.7:p.Thr707Met
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2087C>T
  hgvsp: ENSP00000355343.2:p.Thr696Met
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2087C>T
  hgvsp: ENSP00000389445.1:p.Thr696Met
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.78C>T
  hgvsp: ENSP00000407672.1:p.Thr27Met
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.83C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.422C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2087C>T
  hgvsp: ENSP00000345308.6:p.Thr696Met
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3691
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5032
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3384
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11839
  bin: 9.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 4660
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4938
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1647
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50889
  bin: 9.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr696Met
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

1-154228166-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154228166
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154228166
    reference: chr 1
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.88T>C
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2092T>C
  hgvsp: ENSP00000345308.6:p.Ser698Pro
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2092T>C
  hgvsp: ENSP00000389445.1:p.Ser698Pro
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2092T>C
  hgvsp: ENSP00000355343.2:p.Ser698Pro
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.427T>C
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2125T>C
  hgvsp: ENSP00000271877.7:p.Ser709Pro
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.83T>C
  hgvsp: ENSP00000407672.1:p.Ser29Pro
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4940
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11814
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3883
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4401
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50888
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser698Pro
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

1-154228168-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154228168
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154228168
    reference: chr 1
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.90T>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2094T>A
  hgvsp: ENST00000361546.2:c.2094T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.429T>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2094T>A
  hgvsp: ENST00000428931.1:c.2094T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2127T>A
  hgvsp: ENST00000271877.7:c.2127T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2094T>A
  hgvsp: ENST00000343815.6:c.2094T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.85T>A
  hgvsp: ENST00000433615.1:c.85T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3883
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4401
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4940
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11815
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1652
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser698Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

1-154228170-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154228170
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154228170
    reference: chr 1
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2096C>T
  hgvsp: ENSP00000345308.6:p.Thr699Met
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.431C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2129C>T
  hgvsp: ENSP00000271877.7:p.Thr710Met
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2096C>T
  hgvsp: ENSP00000389445.1:p.Thr699Met
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2096C>T
  hgvsp: ENSP00000355343.2:p.Thr699Met
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.87C>T
  hgvsp: ENSP00000407672.1:p.Thr30Met
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.92C>T
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4401
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4941
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11813
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3883
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1624
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr699Met
num of homozygotes: 1
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

1-154228171-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154228171
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154228171
    reference: chr 1
allele count: 7
allele frequency: 5.765492702533522e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2097G>A
  hgvsp: ENST00000343815.6:c.2097G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2097G>A
  hgvsp: ENST00000428931.1:c.2097G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2097G>A
  hgvsp: ENST00000361546.2:c.2097G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.432G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.93G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.88G>A
  hgvsp: ENST00000433615.1:c.88G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2130G>A
  hgvsp: ENST00000271877.7:c.2130G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3883
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4941
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11815
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1650
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1625
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr699Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

1-154228183-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154228183
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154228183
    reference: chr 1
allele count: 8
allele frequency: 6.589134517181169e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2109C>T
  hgvsp: ENST00000343815.6:c.2109C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2109C>T
  hgvsp: ENST00000361546.2:c.2109C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2142C>T
  hgvsp: ENST00000271877.7:c.2142C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.100C>T
  hgvsp: ENST00000433615.1:c.100C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2109C>T
  hgvsp: ENST00000428931.1:c.2109C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.105C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.444C>T
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3881
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4943
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11813
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5032
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1625
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1221
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50887
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1400
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr703Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

1-154228196-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154228196
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154228196
    reference: chr 1
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.118A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2122A>G
  hgvsp: ENSP00000345308.6:p.Thr708Ala
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2122A>G
  hgvsp: ENSP00000389445.1:p.Thr708Ala
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.457A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2122A>G
  hgvsp: ENSP00000355343.2:p.Thr708Ala
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.113A>G
  hgvsp: ENSP00000407672.1:p.Thr39Ala
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2155A>G
  hgvsp: ENSP00000271877.7:p.Thr719Ala
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4943
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5032
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11810
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1221
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1652
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50885
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr708Ala
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

1-154228206-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154228206
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154228206
    reference: chr 1
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.128G>C
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2132G>C
  hgvsp: ENSP00000389445.1:p.Gly711Ala
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2165G>C
  hgvsp: ENSP00000271877.7:p.Gly722Ala
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2132G>C
  hgvsp: ENSP00000355343.2:p.Gly711Ala
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.123G>C
  hgvsp: ENSP00000407672.1:p.Gly42Ala
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2132G>C
  hgvsp: ENSP00000345308.6:p.Gly711Ala
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.467G>C
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5032
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11810
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4943
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1221
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50885
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1653
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly711Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

1-154228208-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154228208
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154228208
    reference: chr 1
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2134C>T
  hgvsp: ENSP00000345308.6:p.Arg712Cys
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2134C>T
  hgvsp: ENSP00000355343.2:p.Arg712Cys
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.125C>T
  hgvsp: ENSP00000407672.1:p.Arg43Cys
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.130C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.469C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2134C>T
  hgvsp: ENSP00000389445.1:p.Arg712Cys
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2167C>T
  hgvsp: ENSP00000271877.7:p.Arg723Cys
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4943
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5032
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11811
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1221
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2011
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1625
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg712Cys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

1-154228209-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154228209
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154228209
    reference: chr 1
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.131G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2168G>A
  hgvsp: ENSP00000271877.7:p.Arg723His
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.470G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2135G>A
  hgvsp: ENSP00000389445.1:p.Arg712His
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.126G>A
  hgvsp: ENSP00000407672.1:p.Arg43His
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2135G>A
  hgvsp: ENSP00000355343.2:p.Arg712His
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2135G>A
  hgvsp: ENSP00000345308.6:p.Arg712His
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5032
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4943
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11810
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3695
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4399
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1400
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1652
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2011
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg712His
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-154228211-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154228211
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154228211
    reference: chr 1
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2170A>G
  hgvsp: ENSP00000271877.7:p.Thr724Ala
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2137A>G
  hgvsp: ENSP00000389445.1:p.Thr713Ala
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.128A>G
  hgvsp: ENSP00000407672.1:p.Thr44Ala
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2137A>G
  hgvsp: ENSP00000345308.6:p.Thr713Ala
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.133A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2137A>G
  hgvsp: ENSP00000355343.2:p.Thr713Ala
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.472A>G
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4943
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3695
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11809
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4664
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1221
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1625
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr713Ala
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

1-154228215-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154228215
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154228215
    reference: chr 1
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.476C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2141C>T
  hgvsp: ENSP00000345308.6:p.Ser714Leu
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.137C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2141C>T
  hgvsp: ENSP00000389445.1:p.Ser714Leu
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2141C>T
  hgvsp: ENSP00000355343.2:p.Ser714Leu
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.132C>T
  hgvsp: ENSP00000407672.1:p.Ser45Leu
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2174C>T
  hgvsp: ENSP00000271877.7:p.Ser725Leu
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11811
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5032
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3695
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4942
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1651
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1400
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1625
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser714Leu
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

1-154228216-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154228216
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154228216
    reference: chr 1
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2142G>T
  hgvsp: ENST00000361546.2:c.2142G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2142G>T
  hgvsp: ENST00000343815.6:c.2142G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.138G>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2142G>T
  hgvsp: ENST00000428931.1:c.2142G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.133G>T
  hgvsp: ENST00000433615.1:c.133G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2175G>T
  hgvsp: ENST00000271877.7:c.2175G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.477G>T
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11810
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5032
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4942
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser714Ser
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

1-154228222-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154228222
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154228222
    reference: chr 1
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2181C>T
  hgvsp: ENST00000271877.7:c.2181C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.483C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2148C>T
  hgvsp: ENST00000428931.1:c.2148C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2148C>T
  hgvsp: ENST00000343815.6:c.2148C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.139C>T
  hgvsp: ENST00000433615.1:c.139C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.144C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2148C>T
  hgvsp: ENST00000361546.2:c.2148C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3383
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4660
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4398
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11808
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3695
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5035
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1652
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser716Ser
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

1-154228223-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154228223
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154228223
    reference: chr 1
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2149A>G
  hgvsp: ENSP00000355343.2:p.Thr717Ala
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.140A>G
  hgvsp: ENSP00000407672.1:p.Thr48Ala
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.145A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2149A>G
  hgvsp: ENSP00000389445.1:p.Thr717Ala
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2182A>G
  hgvsp: ENSP00000271877.7:p.Thr728Ala
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2149A>G
  hgvsp: ENSP00000345308.6:p.Thr717Ala
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.484A>G
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4659
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4398
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11809
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3383
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3695
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5035
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50877
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr717Ala
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

1-154228225-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154228225
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154228225
    reference: chr 1
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.486T>C
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2151T>C
  hgvsp: ENST00000428931.1:c.2151T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2184T>C
  hgvsp: ENST00000271877.7:c.2184T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.142T>C
  hgvsp: ENST00000433615.1:c.142T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2151T>C
  hgvsp: ENST00000361546.2:c.2151T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.147T>C
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2151T>C
  hgvsp: ENST00000343815.6:c.2151T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11809
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4398
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5035
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3383
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4659
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr717Thr
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

1-154228235-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154228235
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154228235
    reference: chr 1
allele count: 19
allele frequency: 1.564971006852926e-4
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.492+4A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2190+4A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2157+4A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.148+4A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2157+4A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2157+4A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.153+4A>G
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4946
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5035
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11816
  bin: 9.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4659
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3383
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4398
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3692
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1648
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 8.75e1
  variant carriers: 0
hgvs: c.2157+4A>G
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: A
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

1-154228236-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154228236
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154228236
    reference: chr 1
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2157+5G>C
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.153+5G>C
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2190+5G>C
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2157+5G>C
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.148+5G>C
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2157+5G>C
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.492+5G>C
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3019
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5034
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4659
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3889
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11808
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3383
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1646
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1105
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 7.25e1
  variant carriers: 0
hgvs: c.2157+5G>C
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

1-154228240-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154228240
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154228240
    reference: chr 1
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2190+9G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2157+9G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.492+9G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2157+9G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.153+9G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2157+9G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.148+9G>A
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3383
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2940
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3889
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4660
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5035
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11808
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1629
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1105
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

1-154228255-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154228255
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154228255
    reference: chr 1
allele count: 22
allele frequency: 1.812071692145493e-4
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.153+24G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2157+24G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2157+24G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2190+24G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.492+24G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.148+24G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2157+24G>A
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4658
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2934
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3383
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11816
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1219
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2013
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50877
  bin: 9.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ

1-154228267-T-TAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154228267
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154228269
    reference: chr 1
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: TAG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.153+37_153+38insGA
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.492+37_492+38insGA
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2190+37_2190+38insGA
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.148+37_148+38insGA
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2157+37_2157+38insGA
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2157+37_2157+38insGA
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2157+37_2157+38insGA
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3021
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4950
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2920
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3695
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3886
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4658
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11807
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3384
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5034
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50874
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD

1-154228269-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154228269
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154228269
    reference: chr 1
allele count: 3
allele frequency: 2.471047559428694e-5
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2157+38C>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.148+38C>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2157+38C>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2157+38C>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.153+38C>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.492+38C>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2190+38C>G
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3384
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11807
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3695
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4658
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3885
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4950
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5035
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2013
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ

1-154228270-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154228270
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154228270
    reference: chr 1
allele count: 6
allele frequency: 4.942176534545814e-5
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2157+39A>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2157+39A>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2190+39A>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.153+39A>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.148+39A>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.492+39A>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2157+39A>T
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3384
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4659
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11807
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5034
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4950
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4396
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1473
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ

1-154228270-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154228270
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154228270
    reference: chr 1
allele count: 2
allele frequency: 1.647392178181938e-5
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2157+39A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.492+39A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.148+39A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2190+39A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2157+39A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2157+39A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.153+39A>G
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3384
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4659
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5034
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11807
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4950
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1197
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 1473
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum

1-154228276-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154228276
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154228276
    reference: chr 1
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.153+45A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2157+45A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.492+45A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.148+45A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2157+45A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2157+45A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2190+45A>G
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3870
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4950
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4642
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3692
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
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genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 11806
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1608
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50869
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2013
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

1-154229492-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154229492
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154229492
    reference: chr 1
allele count: 2
allele frequency: 1.717180389799948e-5
allele num: 116470
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.149-47G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2158-47G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2158-47G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2191-47G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2158-47G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.493-47G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.154-47G>A
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2792
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4681
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9315
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20058
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2015
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11947
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1450
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 901
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

1-154229502-TTTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154229502
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154229499
    reference: chr 1
allele count: 3
allele frequency: 2.563927252837413e-5
allele num: 117008
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2158-29_2158-27delTCT
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2158-29_2158-27delTCT
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2158-29_2158-27delTCT
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.149-29_149-27delTCT
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.493-29_493-27delTCT
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2191-29_2191-27delTCT
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.154-29_154-27delTCT
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4664
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10838
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20598
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1964
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12054
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3599
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4680
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2413
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2020
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: TTTC
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

1-154229513-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154229513
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154229513
    reference: chr 1
allele count: 1
allele frequency: 8.506584096090374e-6
allele num: 117556
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.493-26C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.154-26C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2158-26C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.149-26C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2191-26C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2158-26C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2158-26C>T
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12117
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12280
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4658
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21016
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1047
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8512
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1913
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2934
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4679
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

1-154229525-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154229525
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154229525
    reference: chr 1
allele count: 1
allele frequency: 8.403926314374075e-6
allele num: 118992
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2158-14T>C
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2191-14T>C
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.149-14T>C
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2158-14T>C
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.154-14T>C
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2158-14T>C
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.493-14T>C
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21536
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4672
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13594
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12294
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3043
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3745
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32894
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4683
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-154229528-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154229528
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154229528
    reference: chr 1
allele count: 2
allele frequency: 1.675940202453577e-5
allele num: 119336
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.149-11C>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.154-11C>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2191-11C>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.493-11C>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2158-11C>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2158-11C>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2158-11C>A
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13754
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21675
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2472
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33078
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

1-154229529-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154229529
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154229529
    reference: chr 1
allele count: 1
allele frequency: 8.37184381488179e-6
allele num: 119448
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2191-10C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2158-10C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.493-10C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.154-10C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.149-10C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2158-10C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2158-10C>T
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13795
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12343
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21701
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8875
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4684
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2477
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

1-154229531-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154229531
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154229531
    reference: chr 1
allele count: 9
allele frequency: 7.526342197691921e-5
allele num: 119580
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.154-8T>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2158-8T>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.493-8T>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2158-8T>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2191-8T>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.149-8T>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2158-8T>G
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21790
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13815
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1365
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2486
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3085
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 976
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4689
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
hgvs: c.2158-8T>G
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

1-154229544-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154229544
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154229544
    reference: chr 1
allele count: 1
allele frequency: 8.292974192264313e-6
allele num: 120584
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.154A>G
  hgvsp: ENST00000433615.1:c.154A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2196A>G
  hgvsp: ENST00000271877.7:c.2196A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2163A>G
  hgvsp: ENST00000428931.1:c.2163A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.159A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2163A>G
  hgvsp: ENST00000343815.6:c.2163A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.498A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2163A>G
  hgvsp: ENST00000361546.2:c.2163A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14171
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22119
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3176
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3869
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2556
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4687
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr721Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum

1-154229545-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154229545
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154229545
    reference: chr 1
allele count: 1
allele frequency: 8.290086714307032e-6
allele num: 120626
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.155A>T
  hgvsp: ENSP00000407672.1:p.Ser53Cys
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2197A>T
  hgvsp: ENSP00000271877.7:p.Ser733Cys
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2164A>T
  hgvsp: ENSP00000355343.2:p.Ser722Cys
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.499A>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2164A>T
  hgvsp: ENSP00000345308.6:p.Ser722Cys
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2164A>T
  hgvsp: ENSP00000389445.1:p.Ser722Cys
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.160A>T
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14183
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1381
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser722Cys
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

1-154229553-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154229553
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154229553
    reference: chr 1
allele count: 1
allele frequency: 8.272803984182399e-6
allele num: 120878
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.507G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2172G>A
  hgvsp: ENST00000428931.1:c.2172G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.163G>A
  hgvsp: ENST00000433615.1:c.163G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2172G>A
  hgvsp: ENST00000361546.2:c.2172G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2172G>A
  hgvsp: ENST00000343815.6:c.2172G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.168G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000398609
  ensembl transcript: ENST00000428595
  gene symbol: UBAP2L
  hgvsc: ENST00000428595.1:c.7G>A
  hgvsp: ENST00000428595.1:c.7G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2205G>A
  hgvsp: ENST00000271877.7:c.2205G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22265
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4721
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12686
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14221
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33942
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4688
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3211
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu724Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

1-154229561-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154229561
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154229561
    reference: chr 1
allele count: 2
allele frequency: 1.65180046250413e-5
allele num: 121080
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2180C>T
  hgvsp: ENSP00000389445.1:p.Ala727Val
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2180C>T
  hgvsp: ENSP00000355343.2:p.Ala727Val
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2213C>T
  hgvsp: ENSP00000271877.7:p.Ala738Val
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.515C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2180C>T
  hgvsp: ENSP00000345308.6:p.Ala727Val
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.171C>T
  hgvsp: ENSP00000407672.1:p.Ala58Val
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000398609
  ensembl transcript: ENST00000428595
  gene symbol: UBAP2L
  hgvsc: ENST00000428595.1:c.15C>T
  hgvsp: ENSP00000398609.1:p.Ala6Val
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.176C>T
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14168
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12785
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22388
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4760
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9192
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala727Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

1-154229570-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154229570
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154229570
    reference: chr 1
allele count: 1
allele frequency: 8.245790523937529e-6
allele num: 121274
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.180A>G
  hgvsp: ENSP00000407672.1:p.His61Arg
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.185A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.524A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2189A>G
  hgvsp: ENSP00000345308.6:p.His730Arg
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2189A>G
  hgvsp: ENSP00000389445.1:p.His730Arg
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2189A>G
  hgvsp: ENSP00000355343.2:p.His730Arg
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000398609
  ensembl transcript: ENST00000428595
  gene symbol: UBAP2L
  hgvsc: ENST00000428595.1:c.24A>G
  hgvsp: ENSP00000398609.1:p.His9Arg
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2222A>G
  hgvsp: ENSP00000271877.7:p.His741Arg
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14181
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12842
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4773
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34206
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9263
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.25e1
  variant carriers: 0
hgvs: p.His730Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff

1-154229580-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154229580
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154229580
    reference: chr 1
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.195C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2199C>T
  hgvsp: ENST00000343815.6:c.2199C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2232C>T
  hgvsp: ENST00000271877.7:c.2232C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2199C>T
  hgvsp: ENST00000361546.2:c.2199C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000398609
  ensembl transcript: ENST00000428595
  gene symbol: UBAP2L
  hgvsc: ENST00000428595.1:c.34C>T
  hgvsp: ENST00000428595.1:c.34C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.534C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2199C>T
  hgvsp: ENST00000428931.1:c.2199C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.190C>T
  hgvsp: ENST00000433615.1:c.190C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14166
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4698
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1398
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser733Ser
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum

1-154229582-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154229582
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154229582
    reference: chr 1
allele count: 9
allele frequency: 7.417419397375882e-5
allele num: 121336
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2201G>A
  hgvsp: ENSP00000355343.2:p.Ser734Asn
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.536G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.197G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2234G>A
  hgvsp: ENSP00000271877.7:p.Ser745Asn
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2201G>A
  hgvsp: ENSP00000345308.6:p.Ser734Asn
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.192G>A
  hgvsp: ENSP00000407672.1:p.Ser65Asn
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000398609
  ensembl transcript: ENST00000428595
  gene symbol: UBAP2L
  hgvsc: ENST00000428595.1:c.36G>A
  hgvsp: ENSP00000398609.1:p.Ser13Asn
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2201G>A
  hgvsp: ENSP00000389445.1:p.Ser734Asn
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14159
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22519
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4782
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9302
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3953
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3284
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser734Asn
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

1-154229587-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154229587
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154229587
    reference: chr 1
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2206T>C
  hgvsp: ENSP00000345308.6:p.Phe736Leu
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2206T>C
  hgvsp: ENSP00000355343.2:p.Phe736Leu
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2239T>C
  hgvsp: ENSP00000271877.7:p.Phe747Leu
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.202T>C
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.197T>C
  hgvsp: ENSP00000407672.1:p.Phe67Leu
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2206T>C
  hgvsp: ENSP00000389445.1:p.Phe736Leu
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000398609
  ensembl transcript: ENST00000428595
  gene symbol: UBAP2L
  hgvsc: ENST00000428595.1:c.41T>C
  hgvsp: ENSP00000398609.1:p.Phe15Leu
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.541T>C
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12873
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9308
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Phe736Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
reference allele: T
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum

1-154229593-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154229593
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154229593
    reference: chr 1
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2212A>T
  hgvsp: ENSP00000389445.1:p.Thr738Ser
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2212A>T
  hgvsp: ENSP00000355343.2:p.Thr738Ser
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.203A>T
  hgvsp: ENSP00000407672.1:p.Thr69Ser
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2212A>T
  hgvsp: ENSP00000345308.6:p.Thr738Ser
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2245A>T
  hgvsp: ENSP00000271877.7:p.Thr749Ser
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000398609
  ensembl transcript: ENST00000428595
  gene symbol: UBAP2L
  hgvsc: ENST00000428595.1:c.47A>T
  hgvsp: ENSP00000398609.1:p.Thr17Ser
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.208A>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.547A>T
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4786
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22556
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12883
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1396
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr738Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

1-154229601-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154229601
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154229601
    reference: chr 1
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2220C>T
  hgvsp: ENST00000343815.6:c.2220C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2253C>T
  hgvsp: ENST00000271877.7:c.2253C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.216C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.211C>T
  hgvsp: ENST00000433615.1:c.211C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.555C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2220C>T
  hgvsp: ENST00000361546.2:c.2220C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000398609
  ensembl transcript: ENST00000428595
  gene symbol: UBAP2L
  hgvsc: ENST00000428595.1:c.55C>T
  hgvsp: ENST00000428595.1:c.55C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2220C>T
  hgvsp: ENST00000428931.1:c.2220C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4787
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12883
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14135
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22572
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9318
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2597
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser740Ser
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP

1-154229610-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154229610
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154229610
    reference: chr 1
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.225C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2262C>T
  hgvsp: ENST00000271877.7:c.2262C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.564C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2229C>T
  hgvsp: ENST00000343815.6:c.2229C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2229C>T
  hgvsp: ENST00000361546.2:c.2229C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2229C>T
  hgvsp: ENST00000428931.1:c.2229C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000398609
  ensembl transcript: ENST00000428595
  gene symbol: UBAP2L
  hgvsc: ENST00000428595.1:c.64C>T
  hgvsp: ENST00000428595.1:c.64C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.220C>T
  hgvsp: ENST00000433615.1:c.220C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22586
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4785
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3957
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34289
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9323
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val743Val
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

1-154229612-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154229612
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154229612
    reference: chr 1
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.566C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2231C>T
  hgvsp: ENSP00000389445.1:p.Ser744Phe
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2264C>T
  hgvsp: ENSP00000271877.7:p.Ser755Phe
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000398609
  ensembl transcript: ENST00000428595
  gene symbol: UBAP2L
  hgvsc: ENST00000428595.1:c.66C>T
  hgvsp: ENSP00000398609.1:p.Ser23Phe
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2231C>T
  hgvsp: ENSP00000355343.2:p.Ser744Phe
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.222C>T
  hgvsp: ENSP00000407672.1:p.Ser75Phe
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.227C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2231C>T
  hgvsp: ENSP00000345308.6:p.Ser744Phe
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14117
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4786
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9326
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1396
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3957
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser744Phe
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

1-154229617-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154229617
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154229617
    reference: chr 1
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000398609
  ensembl transcript: ENST00000428595
  gene symbol: UBAP2L
  hgvsc: ENST00000428595.1:c.71C>T
  hgvsp: ENSP00000398609.1:p.Pro25Ser
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.232C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2236C>T
  hgvsp: ENSP00000389445.1:p.Pro746Ser
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2236C>T
  hgvsp: ENSP00000355343.2:p.Pro746Ser
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2236C>T
  hgvsp: ENSP00000345308.6:p.Pro746Ser
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2269C>T
  hgvsp: ENSP00000271877.7:p.Pro757Ser
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.571C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.227C>T
  hgvsp: ENSP00000407672.1:p.Pro77Ser
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12889
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9330
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4700
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro746Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-154229623-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154229623
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154229623
    reference: chr 1
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2242C>A
  hgvsp: ENSP00000355343.2:p.Pro748Thr
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2275C>A
  hgvsp: ENSP00000271877.7:p.Pro759Thr
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.577C>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000398609
  ensembl transcript: ENST00000428595
  gene symbol: UBAP2L
  hgvsc: ENST00000428595.1:c.77C>A
  hgvsp: ENSP00000398609.1:p.Pro27Thr
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.233C>A
  hgvsp: ENSP00000407672.1:p.Pro79Thr
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2242C>A
  hgvsp: ENSP00000345308.6:p.Pro748Thr
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2242C>A
  hgvsp: ENSP00000389445.1:p.Pro748Thr
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.238C>A
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14102
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12883
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9326
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34280
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4710
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3303
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro748Thr
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

1-154229623-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154229623
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154229623
    reference: chr 1
allele count: 22
allele frequency: 1.812101543581042e-4
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2242C>G
  hgvsp: ENSP00000345308.6:p.Pro748Ala
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.233C>G
  hgvsp: ENSP00000407672.1:p.Pro79Ala
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2242C>G
  hgvsp: ENSP00000389445.1:p.Pro748Ala
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.577C>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2242C>G
  hgvsp: ENSP00000355343.2:p.Pro748Ala
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.238C>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000398609
  ensembl transcript: ENST00000428595
  gene symbol: UBAP2L
  hgvsc: ENST00000428595.1:c.77C>G
  hgvsp: ENSP00000398609.1:p.Pro27Ala
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2275C>G
  hgvsp: ENSP00000271877.7:p.Pro759Ala
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 14102
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12883
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3303
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro748Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum

1-154229633-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154229633
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154229633
    reference: chr 1
allele count: 2
allele frequency: 1.647419317638919e-5
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2252G>A
  hgvsp: ENSP00000389445.1:p.Ser751Asn
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.248G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.243G>A
  hgvsp: ENSP00000407672.1:p.Ser82Asn
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2285G>A
  hgvsp: ENSP00000271877.7:p.Ser762Asn
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.587G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2252G>A
  hgvsp: ENSP00000355343.2:p.Ser751Asn
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000398609
  ensembl transcript: ENST00000428595
  gene symbol: UBAP2L
  hgvsc: ENST00000428595.1:c.87G>A
  hgvsp: ENSP00000398609.1:p.Ser30Asn
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2252G>A
  hgvsp: ENSP00000345308.6:p.Ser751Asn
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12891
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4787
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2594
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9329
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34289
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser751Asn
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

1-154229642-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154229642
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154229642
    reference: chr 1
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2261C>G
  hgvsp: ENSP00000389445.1:p.Ser754Cys
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.252C>G
  hgvsp: ENSP00000407672.1:p.Ser85Cys
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000398609
  ensembl transcript: ENST00000428595
  gene symbol: UBAP2L
  hgvsc: ENST00000428595.1:c.96C>G
  hgvsp: ENSP00000398609.1:p.Ser33Cys
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2294C>G
  hgvsp: ENSP00000271877.7:p.Ser765Cys
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.596C>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2261C>G
  hgvsp: ENSP00000345308.6:p.Ser754Cys
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2261C>G
  hgvsp: ENSP00000355343.2:p.Ser754Cys
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.257C>G
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12891
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4788
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22622
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14087
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34296
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3955
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2597
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3303
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser754Cys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

1-154229644-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154229644
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154229644
    reference: chr 1
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2296A>G
  hgvsp: ENSP00000271877.7:p.Ser766Gly
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2263A>G
  hgvsp: ENSP00000389445.1:p.Ser755Gly
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2263A>G
  hgvsp: ENSP00000345308.6:p.Ser755Gly
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000398609
  ensembl transcript: ENST00000428595
  gene symbol: UBAP2L
  hgvsc: ENST00000428595.1:c.98A>G
  hgvsp: ENSP00000398609.1:p.Ser34Gly
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2263A>G
  hgvsp: ENSP00000355343.2:p.Ser755Gly
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.598A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.254A>G
  hgvsp: ENSP00000407672.1:p.Ser86Gly
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.259A>G
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14087
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12892
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22621
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4789
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1116
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser755Gly
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

1-154229645-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154229645
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154229645
    reference: chr 1
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2297G>A
  hgvsp: ENSP00000271877.7:p.Ser766Asn
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000398609
  ensembl transcript: ENST00000428595
  gene symbol: UBAP2L
  hgvsc: ENST00000428595.1:c.99G>A
  hgvsp: ENSP00000398609.1:p.Ser34Asn
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.599G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.255G>A
  hgvsp: ENSP00000407672.1:p.Ser86Asn
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2264G>A
  hgvsp: ENSP00000355343.2:p.Ser755Asn
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.260G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2264G>A
  hgvsp: ENSP00000345308.6:p.Ser755Asn
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2264G>A
  hgvsp: ENSP00000389445.1:p.Ser755Asn
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12892
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4788
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22622
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14085
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2596
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser755Asn
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP

1-154229649-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154229649
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154229649
    reference: chr 1
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2268C>T
  hgvsp: ENST00000361546.2:c.2268C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.259C>T
  hgvsp: ENST00000433615.1:c.259C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2268C>T
  hgvsp: ENST00000428931.1:c.2268C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2268C>T
  hgvsp: ENST00000343815.6:c.2268C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000398609
  ensembl transcript: ENST00000428595
  gene symbol: UBAP2L
  hgvsc: ENST00000428595.1:c.103C>T
  hgvsp: ENST00000428595.1:c.103C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2301C>T
  hgvsp: ENST00000271877.7:c.2301C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.264C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.603C>T
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14082
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4788
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2412
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12895
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9324
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3956
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1119
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu756Leu
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

1-154229654-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154229654
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154229654
    reference: chr 1
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.264G>C
  hgvsp: ENSP00000407672.1:p.Ser89Thr
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2306G>C
  hgvsp: ENSP00000271877.7:p.Ser769Thr
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.608G>C
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2273G>C
  hgvsp: ENSP00000355343.2:p.Ser758Thr
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000398609
  ensembl transcript: ENST00000428595
  gene symbol: UBAP2L
  hgvsc: ENST00000428595.1:c.108G>C
  hgvsp: ENSP00000398609.1:p.Ser37Thr
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2273G>C
  hgvsp: ENSP00000389445.1:p.Ser758Thr
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.269G>C
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2273G>C
  hgvsp: ENSP00000345308.6:p.Ser758Thr
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14066
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1392
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3293
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34241
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser758Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

1-154229674-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154229674
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154229674
    reference: chr 1
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2293A>G
  hgvsp: ENSP00000355343.2:p.Ser765Gly
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2293A>G
  hgvsp: ENSP00000345308.6:p.Ser765Gly
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.284A>G
  hgvsp: ENSP00000407672.1:p.Ser96Gly
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000398609
  ensembl transcript: ENST00000428595
  gene symbol: UBAP2L
  hgvsc: ENST00000428595.1:c.128A>G
  hgvsp: ENSP00000398609.1:p.Ser44Gly
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2293A>G
  hgvsp: ENSP00000389445.1:p.Ser765Gly
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.628A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.289A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2326A>G
  hgvsp: ENSP00000271877.7:p.Ser776Gly
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12875
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14064
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9291
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2589
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser765Gly
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

1-154229675-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154229675
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154229675
    reference: chr 1
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2294G>C
  hgvsp: ENSP00000355343.2:p.Ser765Thr
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000398609
  ensembl transcript: ENST00000428595
  gene symbol: UBAP2L
  hgvsc: ENST00000428595.1:c.129G>C
  hgvsp: ENSP00000398609.1:p.Ser44Thr
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.285G>C
  hgvsp: ENSP00000407672.1:p.Ser96Thr
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2294G>C
  hgvsp: ENSP00000389445.1:p.Ser765Thr
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.629G>C
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2327G>C
  hgvsp: ENSP00000271877.7:p.Ser776Thr
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.290G>C
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2294G>C
  hgvsp: ENSP00000345308.6:p.Ser765Thr
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22644
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4767
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12877
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14067
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34227
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser765Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

1-154229684-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154229684
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154229684
    reference: chr 1
allele count: 2
allele frequency: 1.647500741375333e-5
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000398609
  ensembl transcript: ENST00000428595
  gene symbol: UBAP2L
  hgvsc: ENST00000428595.1:c.138G>A
  hgvsp: ENSP00000398609.1:p.Ser47Asn
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2336G>A
  hgvsp: ENSP00000271877.7:p.Ser779Asn
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2303G>A
  hgvsp: ENSP00000345308.6:p.Ser768Asn
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.299G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.638G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.294G>A
  hgvsp: ENSP00000407672.1:p.Ser99Asn
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2303G>A
  hgvsp: ENSP00000355343.2:p.Ser768Asn
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2303G>A
  hgvsp: ENSP00000389445.1:p.Ser768Asn
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12871
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3936
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4670
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser768Asn
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

1-154229695-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154229695
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154229695
    reference: chr 1
allele count: 16
allele frequency: 1.317978879388458e-4
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2314G>C
  hgvsp: ENSP00000389445.1:p.Val772Leu
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2314G>C
  hgvsp: ENSP00000345308.6:p.Val772Leu
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000398609
  ensembl transcript: ENST00000428595
  gene symbol: UBAP2L
  hgvsc: ENST00000428595.1:c.149G>C
  hgvsp: ENSP00000398609.1:p.Val51Leu
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2314G>C
  hgvsp: ENSP00000355343.2:p.Val772Leu
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.305G>C
  hgvsp: ENSP00000407672.1:p.Val103Leu
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.310G>C
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2347G>C
  hgvsp: ENSP00000271877.7:p.Val783Leu
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.649G>C
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22683
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12863
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3933
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9282
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3304
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val772Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

1-154229703-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154229703
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154229703
    reference: chr 1
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2322C>T
  hgvsp: ENST00000428931.1:c.2322C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.313C>T
  hgvsp: ENST00000433615.1:c.313C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2355C>T
  hgvsp: ENST00000271877.7:c.2355C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.318C>T
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000398609
  ensembl transcript: ENST00000428595
  gene symbol: UBAP2L
  hgvsc: ENST00000428595.1:c.157C>T
  hgvsp: ENST00000428595.1:c.157C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2322C>T
  hgvsp: ENST00000343815.6:c.2322C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2322C>T
  hgvsp: ENST00000361546.2:c.2322C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.657C>T
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14000
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12883
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4771
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1391
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2591
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3940
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34255
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala774Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum

1-154229706-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154229706
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154229706
    reference: chr 1
allele count: 2
allele frequency: 1.647473599235572e-5
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000398609
  ensembl transcript: ENST00000428595
  gene symbol: UBAP2L
  hgvsc: ENST00000428595.1:c.160G>A
  hgvsp: ENST00000428595.1:c.160G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2325G>A
  hgvsp: ENST00000361546.2:c.2325G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.321G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2325G>A
  hgvsp: ENST00000428931.1:c.2325G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.660G>A
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.316G>A
  hgvsp: ENST00000433615.1:c.316G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2325G>A
  hgvsp: ENST00000343815.6:c.2325G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2358G>A
  hgvsp: ENST00000271877.7:c.2358G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4771
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser775Ser
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

1-154229716-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154229716
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154229716
    reference: chr 1
allele count: 11
allele frequency: 9.061104795795647e-5
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.670T>C
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2335T>C
  hgvsp: ENSP00000345308.6:p.Ser779Pro
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2368T>C
  hgvsp: ENSP00000271877.7:p.Ser790Pro
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2335T>C
  hgvsp: ENSP00000389445.1:p.Ser779Pro
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.331T>C
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.326T>C
  hgvsp: ENSP00000407672.1:p.Ser110Pro
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000398609
  ensembl transcript: ENST00000428595
  gene symbol: UBAP2L
  hgvsc: ENST00000428595.1:c.170T>C
  hgvsp: ENSP00000398609.1:p.Ser58Pro
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2335T>C
  hgvsp: ENSP00000355343.2:p.Ser779Pro
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13957
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4768
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12890
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4670
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3942
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34210
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser779Pro
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/1-154229718-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154229718
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154229718
    reference: chr 1
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.328A>C
  hgvsp: ENST00000433615.1:c.328A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2337A>C
  hgvsp: ENST00000361546.2:c.2337A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.333A>C
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000398609
  ensembl transcript: ENST00000428595
  gene symbol: UBAP2L
  hgvsc: ENST00000428595.1:c.172A>C
  hgvsp: ENST00000428595.1:c.172A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2337A>C
  hgvsp: ENST00000428931.1:c.2337A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2337A>C
  hgvsp: ENST00000343815.6:c.2337A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2370A>C
  hgvsp: ENST00000271877.7:c.2370A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.672A>C
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4769
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34190
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2590
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3941
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser779Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP

1-154229718-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154229718
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154229718
    reference: chr 1
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000398609
  ensembl transcript: ENST00000428595
  gene symbol: UBAP2L
  hgvsc: ENST00000428595.1:c.172A>G
  hgvsp: ENST00000428595.1:c.172A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2337A>G
  hgvsp: ENST00000361546.2:c.2337A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.328A>G
  hgvsp: ENST00000433615.1:c.328A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2370A>G
  hgvsp: ENST00000271877.7:c.2370A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.672A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.333A>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2337A>G
  hgvsp: ENST00000428931.1:c.2337A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2337A>G
  hgvsp: ENST00000343815.6:c.2337A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4769
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1392
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2590
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser779Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff

1-154229731-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154229731
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154229731
    reference: chr 1
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000398609
  ensembl transcript: ENST00000428595
  gene symbol: UBAP2L
  hgvsc: ENST00000428595.1:c.185T>G
  hgvsp: ENSP00000398609.1:p.Ser63Ala
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000271877
  ensembl transcript: ENST00000271877
  gene symbol: UBAP2L
  hgvsc: ENST00000271877.7:c.2383T>G
  hgvsp: ENSP00000271877.7:p.Ser795Ala
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000355343
  ensembl transcript: ENST00000361546
  gene symbol: UBAP2L
  hgvsc: ENST00000361546.2:c.2350T>G
  hgvsp: ENSP00000355343.2:p.Ser784Ala
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000345308
  ensembl transcript: ENST00000343815
  gene symbol: UBAP2L
  hgvsc: ENST00000343815.6:c.2350T>G
  hgvsp: ENSP00000345308.6:p.Ser784Ala
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000407672
  ensembl transcript: ENST00000433615
  gene symbol: UBAP2L
  hgvsc: ENST00000433615.1:c.341T>G
  hgvsp: ENSP00000407672.1:p.Ser115Ala
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000489076
  gene symbol: UBAP2L
  hgvsc: ENST00000489076.1:n.346T>G
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143569
  ensembl protein: ENSP00000389445
  ensembl transcript: ENST00000428931
  gene symbol: UBAP2L
  hgvsc: ENST00000428931.1:c.2350T>G
  hgvsp: ENSP00000389445.1:p.Ser784Ala
  variant of: http://identifiers.org/hgnc/29877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143569
  ensembl transcript: ENST00000495676
  gene symbol: UBAP2L
  hgvsc: ENST00000495676.1:n.685T>G
  variant of: http://identifiers.org/hgnc/29877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4778
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12919
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22723
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13880
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3951
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9312
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser784Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

1-154229758-A-G
type: Variant
allele count: 3
allele frequency: 2.471291826614165e-5
allele num: 121394
alternate allele: G
canonical: true
consequence: intron
filter: PASS
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1483
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1098
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1381
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50903
bin: 9.75e1
variant carriers: 53

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 51
allele frequency: 3.09053448066901e-3
allele num: 16502
num of homozygotes: 1

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.21e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

FS
type: SiteQuality
SIO_000300: 1.657e0

MQRankSum
type: SiteQuality
SIO_000300: -1.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.75e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.979e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.65e-1

DP
type: SiteQuality
SIO_000300: 4.28262e6

QD
type: SiteQuality
SIO_000300: 1.439e1

GenotypeQuality
all individuals: 19
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1999
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1516
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50893
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1202
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1103
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.922337562475971e-4
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.54e1

MQ
type: SiteQuality
SIO_000300: 5.975e1

DP
type: SiteQuality
SIO_000300: 4.282517e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e0

MQRankSum
type: SiteQuality
SIO_000300: -5.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.18e-1

FS
type: SiteQuality
SIO_000300: 2.415e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.58e0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1626
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2003
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1215
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1103
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.466605038132656e-4
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -8.66e-1

QD
type: SiteQuality
SIO_000300: 1.437e1

DP
type: SiteQuality
SIO_000300: 4.283081e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.118e0

VQSLOD
type: SiteQuality
SIO_000300: 9.54e-1

MQ
type: SiteQuality
SIO_000300: 5.987e1

FS
type: SiteQuality
SIO_000300: 3.182e0

MQRankSum
type: SiteQuality
SIO_000300: -1.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1566
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1393
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1103
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1216
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2004
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1625
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.283072e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

FS
type: SiteQuality
SIO_000300: 2.585e0

MQRankSum
type: SiteQuality
SIO_000300: 1.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.98e0

QD
type: SiteQuality
SIO_000300: 1.582e1

VQSLOD
type: SiteQuality
SIO_000300: 5.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.236e0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1104
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1631
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50890
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1222
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1623
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.191e1

MQ
type: SiteQuality
SIO_000300: 6.019e1

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

FS
type: SiteQuality
SIO_000300: 2.805e0

DP
type: SiteQuality
SIO_000300: 4.284042e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2010
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1623
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1222
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50890
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1397
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.019e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

QD
type: SiteQuality
SIO_000300: 1.191e1

FS
type: SiteQuality
SIO_000300: 2.805e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 4.284042e6

MQRankSum
type: SiteQuality
SIO_000300: 8.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e-1

GenotypeQuality
all individuals: 1622
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1221
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1397
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1634
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2010
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 801
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.705e0

DP
type: SiteQuality
SIO_000300: 4.284179e6

QD
type: SiteQuality
SIO_000300: 1.195e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.51e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.896e0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1104
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1623
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50889
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 2011
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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East Asian
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allele num: 8654
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South Asian
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FS
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DP
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VQSLOD
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BaseQRankSum
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MQ
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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Other
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Latino
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allele frequency: 2.245638279495595e-3
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South Asian
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ReadPosRankSum
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MQ
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InbreedingCoeff
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BaseQRankSum
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FS
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QD
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MQRankSum
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ClippingRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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East Asian
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Other
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South Asian
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European (Non-Finnish)
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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DP
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InbreedingCoeff
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MQ
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FS
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ReadPosRankSum
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QD
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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Other
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East Asian
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African
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European (Finnish)
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European (Non-Finnish)
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allele num: 66740
num of homozygotes: 0

FS
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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MQ
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DP
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QD
type: SiteQuality
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
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European (Finnish)
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South Asian
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Other
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African
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InbreedingCoeff
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QD
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MQRankSum
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MQ
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FS
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
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Other
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South Asian
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East Asian
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ClippingRankSum
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FS
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QD
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MQRankSum
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DP
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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East Asian
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Other
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South Asian
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European (Non-Finnish)
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QD
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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DP
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ClippingRankSum
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Non-Finnish)
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European (Finnish)
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South Asian
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Latino
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Other
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VQSLOD
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BaseQRankSum
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MQ
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InbreedingCoeff
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QD
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MQRankSum
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ReadPosRankSum
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FS
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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Other
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European (Finnish)
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European (Non-Finnish)
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African
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South Asian
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VQSLOD
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FS
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QD
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

Other
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South Asian
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
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European (Non-Finnish)
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allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

MQRankSum
type: SiteQuality
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QD
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InbreedingCoeff
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SIO_000300: 0.0e0

VQSLOD
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FS
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BaseQRankSum
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SIO_000300: -1.71e-1

ClippingRankSum
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SIO_000300: 1.39e0

DP
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MQ
type: SiteQuality
SIO_000300: 5.991e1

ReadPosRankSum
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SIO_000300: -3.4e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

InbreedingCoeff
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FS
type: SiteQuality
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MQRankSum
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SIO_000300: -3.04e-1

MQ
type: SiteQuality
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ClippingRankSum
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SIO_000300: -1.115e0

DP
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VQSLOD
type: SiteQuality
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QD
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ReadPosRankSum
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BaseQRankSum
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SIO_000300: -1.343e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
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SIO_000300: 1.372e1

ClippingRankSum
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MQ
type: SiteQuality
SIO_000300: 5.953e1

InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 4.0e-1

VQSLOD
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MQRankSum
type: SiteQuality
SIO_000300: 1.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.08e-1

DP
type: SiteQuality
SIO_000300: 4.283746e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.5e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
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allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 4.04e0

MQRankSum
type: SiteQuality
SIO_000300: 1.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.015e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

FS
type: SiteQuality
SIO_000300: 5.594e0

VQSLOD
type: SiteQuality
SIO_000300: 4.29e-1

DP
type: SiteQuality
SIO_000300: 4.283685e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.931e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.03e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.9e-2

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

ReadPosRankSum
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SIO_000300: -1.131e0

ClippingRankSum
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SIO_000300: 1.22e0

InbreedingCoeff
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SIO_000300: -1.0e-4

MQ
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.01e-1

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.714e0

QD
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SIO_000300: 1.294e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

ClippingRankSum
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ReadPosRankSum
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DP
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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QD
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

African
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Latino
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European (Finnish)
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num of homozygotes: 0

MQ
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
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FS
type: SiteQuality
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ClippingRankSum
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MQRankSum
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66736
num of homozygotes: 0

Other
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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African
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allele frequency: 1.537574476263694e-3
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num of homozygotes: 0

Latino
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allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

FS
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DP
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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QD
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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African
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Other
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FS
type: SiteQuality
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QD
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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DP
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
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QD
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MQRankSum
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VQSLOD
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FS
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DP
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InbreedingCoeff
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BaseQRankSum
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MQ
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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East Asian
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allele frequency: 2.542177027963947e-3
allele num: 8654
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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FS
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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VQSLOD
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MQRankSum
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QD
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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African
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East Asian
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allele num: 8654
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Latino
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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DP
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FS
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ClippingRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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East Asian
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European (Non-Finnish)
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allele frequency: 4.495459585818323e-5
allele num: 66734
num of homozygotes: 0

Latino
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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FS
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VQSLOD
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DP
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MQ
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 8.990919171636647e-5
allele num: 66734
num of homozygotes: 0

Other
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South Asian
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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DP
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BaseQRankSum
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QD
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

Latino
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South Asian
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East Asian
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Other
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African
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

InbreedingCoeff
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DP
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ClippingRankSum
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MQRankSum
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VQSLOD
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MQ
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BaseQRankSum
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QD
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FS
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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European (Finnish)
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European (Non-Finnish)
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East Asian
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Other
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South Asian
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QD
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ClippingRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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DP
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MQ
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Latino
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European (Finnish)
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Other
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South Asian
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East Asian
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ReadPosRankSum
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VQSLOD
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DP
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ClippingRankSum
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InbreedingCoeff
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QD
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FS
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MQRankSum
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MQ
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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East Asian
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Other
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Latino
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European (Non-Finnish)
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FS
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QD
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MQ
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InbreedingCoeff
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DP
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MQRankSum
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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East Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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South Asian
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allele frequency: 0.0e0
allele num: 14386
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.768646e6

QD
type: SiteQuality
SIO_000300: 1.36e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.61e-1

FS
type: SiteQuality
SIO_000300: 8.569000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.697e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.7e-2

GenotypeQuality
all individuals: 393
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1278
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1061
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15258
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.168770453482936e-4
allele num: 8556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.9e1

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.755e0

DP
type: SiteQuality
SIO_000300: 1.795349e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

GenotypeQuality
all individuals: 8856
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1109
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3071
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65992
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15458
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.940993788819876e-4
allele num: 10304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.476e1

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.9e-1

FS
type: SiteQuality
SIO_000300: 1.445e0

MQRankSum
type: SiteQuality
SIO_000300: -5.92e-1

DP
type: SiteQuality
SIO_000300: 1.800572e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.75e0

GenotypeQuality
all individuals: 192
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3080
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33096
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66028
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.167133520074697e-4
allele num: 8568
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.54e-1

FS
type: SiteQuality
SIO_000300: 6.994e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.979e0

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.802028e6

QD
type: SiteQuality
SIO_000300: 1.262e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3769
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
all individuals: 1074
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variant carriers: 0

GenotypeQuality
all individuals: 33157
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.362150381402107e-4
allele num: 66072
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.374e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.186e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.006e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.0e-2

MQRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.805547e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.23e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 33780
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
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variant carriers: 0

GenotypeQuality
all individuals: 105
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variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 138
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GenotypeQuality
all individuals: 1382
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variant carriers: 0

GenotypeQuality
all individuals: 482
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variant carriers: 0

GenotypeQuality
all individuals: 1089
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variant carriers: 0

GenotypeQuality
all individuals: 69
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variant carriers: 0

GenotypeQuality
all individuals: 9089
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506614035616356e-5
allele num: 66374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.29e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.32e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

QD
type: SiteQuality
SIO_000300: 1.283e1

MQ
type: SiteQuality
SIO_000300: 5.966e1

DP
type: SiteQuality
SIO_000300: 1.820244e6

FS
type: SiteQuality
SIO_000300: 2.283e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.624e0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4686
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variant carriers: 1

GenotypeQuality
all individuals: 80
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variant carriers: 0

GenotypeQuality
all individuals: 103
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3172
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variant carriers: 0

GenotypeQuality
all individuals: 33755
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506341698550899e-5
allele num: 66386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16210
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.274e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.86e-2

DP
type: SiteQuality
SIO_000300: 1.820967e6

MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
SIO_000300: 1.93e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.824e0

VQSLOD
type: SiteQuality
SIO_000300: -5.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-1

QD
type: SiteQuality
SIO_000300: 1.236e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504030802550836e-5
allele num: 66488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.638e0

VQSLOD
type: SiteQuality
SIO_000300: 6.19e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.34e-2

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.33e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.13e-1

DP
type: SiteQuality
SIO_000300: 1.825906e6

MQ
type: SiteQuality
SIO_000300: 5.908e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.005530175522962e-5
allele num: 66544
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.307e0

VQSLOD
type: SiteQuality
SIO_000300: 5.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

DP
type: SiteQuality
SIO_000300: 1.83142e6

FS
type: SiteQuality
SIO_000300: 5.87e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

MQRankSum
type: SiteQuality
SIO_000300: 3.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.75e-1

QD
type: SiteQuality
SIO_000300: 1.122e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.89e-2

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 15
bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3943
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500510173458976e-5
allele num: 66644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.273e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

MQ
type: SiteQuality
SIO_000300: 5.914e1

QD
type: SiteQuality
SIO_000300: 1.209e1

DP
type: SiteQuality
SIO_000300: 1.834855e6

FS
type: SiteQuality
SIO_000300: 8.114000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 5.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-2

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66682
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Latino
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allele frequency: 0.0e0
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South Asian
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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FS
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QD
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
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DP
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VQSLOD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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South Asian
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Latino
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allele frequency: 7.77336327517706e-4
allele num: 11578
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East Asian
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FS
type: SiteQuality
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VQSLOD
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MQRankSum
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BaseQRankSum
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QD
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ReadPosRankSum
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DP
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InbreedingCoeff
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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European (Finnish)
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Latino
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South Asian
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East Asian
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African
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QD
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DP
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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FS
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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African
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Other
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South Asian
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Latino
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East Asian
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allele frequency: 0.0e0
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QD
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VQSLOD
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BaseQRankSum
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FS
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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Latino
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East Asian
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European (Non-Finnish)
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European (Finnish)
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African
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BaseQRankSum
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FS
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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MQ
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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European (Finnish)
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Other
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South Asian
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European (Non-Finnish)
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East Asian
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QD
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FS
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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MQRankSum
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MQ
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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European (Non-Finnish)
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South Asian
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Other
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East Asian
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Latino
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DP
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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FS
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QD
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ClippingRankSum
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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East Asian
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Latino
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Other
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European (Finnish)
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South Asian
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QD
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MQRankSum
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InbreedingCoeff
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VQSLOD
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FS
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BaseQRankSum
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MQ
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DP
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Latino
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European (Finnish)
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Other
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European (Non-Finnish)
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East Asian
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DP
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ReadPosRankSum
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MQRankSum
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FS
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BaseQRankSum
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QD
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VQSLOD
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InbreedingCoeff
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MQ
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SIO_000300: 5.962e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.23e-1

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3955
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 22

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2596
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9326
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1116
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495324862143371e-5
allele num: 66736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 17
allele frequency: 1.964863615349052e-3
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.423e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

QD
type: SiteQuality
SIO_000300: 1.351e1

FS
type: SiteQuality
SIO_000300: 1.101e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.83955e6

VQSLOD
type: SiteQuality
SIO_000300: 2.58e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.23e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.9e-2

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 4691
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 2
allele frequency: 1.727712508638562e-4
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.837795e6

VQSLOD
type: SiteQuality
SIO_000300: 2.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.854e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e0

MQRankSum
type: SiteQuality
SIO_000300: 4.03e-1

QD
type: SiteQuality
SIO_000300: 1.619e1

MQ
type: SiteQuality
SIO_000300: 5.941e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 3.062e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.159999999999999e-1

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1394
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996883241428914e-5
allele num: 66736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.109e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.28e0

DP
type: SiteQuality
SIO_000300: 1.837842e6

MQRankSum
type: SiteQuality
SIO_000300: -4.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.318e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.9e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

GenotypeQuality
all individuals: 3302
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 2597
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34295
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.83e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

FS
type: SiteQuality
SIO_000300: 3.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.15e-1

QD
type: SiteQuality
SIO_000300: 1.309e1

DP
type: SiteQuality
SIO_000300: 1.837814e6

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1395
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variant carriers: 0

GenotypeQuality
all individuals: 4691
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variant carriers: 2

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9327
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variant carriers: 0

GenotypeQuality
all individuals: 3304
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.869e0

VQSLOD
type: SiteQuality
SIO_000300: 8.149999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.875e0

MQRankSum
type: SiteQuality
SIO_000300: 2.18e-1

QD
type: SiteQuality
SIO_000300: 9.859999999999999e0

DP
type: SiteQuality
SIO_000300: 1.837821e6

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4691
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3302
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1394
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.837798e6

VQSLOD
type: SiteQuality
SIO_000300: -2.633e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.606e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.51e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.8575e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

QD
type: SiteQuality
SIO_000300: 1.233e1

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.837762e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 8.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.5e-2

MQ
type: SiteQuality
SIO_000300: 5.976e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-3

QD
type: SiteQuality
SIO_000300: 1.289e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.67e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 24
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1391
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variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.87e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.43e0

DP
type: SiteQuality
SIO_000300: 1.836109e6

QD
type: SiteQuality
SIO_000300: 1.454e1

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.41e-1

FS
type: SiteQuality
SIO_000300: 1.9e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.03e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.066e0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 25
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 3935
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9290
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.43e-1

DP
type: SiteQuality
SIO_000300: 1.836147e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.4e-1

MQ
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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FS
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QD
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MQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
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African
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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allele num: 66726
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Other
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InbreedingCoeff
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ClippingRankSum
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MQ
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BaseQRankSum
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QD
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MQRankSum
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ReadPosRankSum
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FS
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 16

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66730
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Other
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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African
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South Asian
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allele frequency: 0.0e0
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MQ
type: SiteQuality
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QD
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FS
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

South Asian
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African
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allele frequency: 0.0e0
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East Asian
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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Other
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InbreedingCoeff
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DP
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QD
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ClippingRankSum
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MQ
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FS
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
type: SiteQuality
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MQRankSum
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SIO_000300: -6.6e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66730
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Other
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MQRankSum
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SIO_000300: 2.29e-1

MQ
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QD
type: SiteQuality
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InbreedingCoeff
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FS
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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DP
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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African
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Other
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East Asian
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South Asian
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ReadPosRankSum
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QD
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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MQ
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FS
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DP
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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South Asian
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European (Non-Finnish)
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African
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Other
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East Asian
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ClippingRankSum
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ReadPosRankSum
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FS
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VQSLOD
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MQ
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MQRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Finnish)
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Other
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East Asian
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European (Non-Finnish)
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African
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MQ
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MQRankSum
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ClippingRankSum
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FS
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DP
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ReadPosRankSum
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QD
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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African
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European (Non-Finnish)
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European (Finnish)
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Other
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South Asian
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VQSLOD
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InbreedingCoeff
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MQ
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FS
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DP
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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QD
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