2-216183008-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216183008
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216183008
    reference: chr 2
allele count: 2
allele frequency: 1.648125257519571e-5
allele num: 121350
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.46+52T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*320+52T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*273+52T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+52T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.223+52T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.374+52T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.220+52T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.46+52T>C
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6834
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8089
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7850
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4654
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6869
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6770
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5319
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1637
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3144
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3435
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

2-216184353-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184353
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184353
    reference: chr 2
allele count: 1
allele frequency: 8.392359595823962e-6
allele num: 119156
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*321-35G>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.47-35G>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.375-35G>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1397G>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.221-35G>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.224-35G>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*274-35G>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.47-35G>T
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6426
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3816
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17377
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4268
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14777
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1935
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5410
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1607
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1383
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1836
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

2-216184359-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184359
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184359
    reference: chr 2
allele count: 1
allele frequency: 8.372684952610603e-6
allele num: 119436
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*274-29A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.47-29A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1403A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*321-29A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.224-29A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.221-29A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.47-29A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.375-29A>G
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18810
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15805
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2971
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6514
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genotype depth: GenotypeDepth
  all individuals: 2091
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genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 918
  bin: 7.5e0
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genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1502
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30443
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
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genotype quality: GenotypeQuality
  all individuals: 1314
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

2-216184361-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184361
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184360
    reference: chr 2
allele count: 1
allele frequency: 8.369321415419637e-6
allele num: 119484
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1406delG
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.47-26delG
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*274-26delG
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.375-26delG
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.47-26delG
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.221-26delG
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*321-26delG
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.224-26delG
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 19374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6517
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15962
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31155
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: TG
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

2-216184364-CTTTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184364
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184360
    reference: chr 2
allele count: 12
allele frequency: 1.003159953854642e-4
allele num: 119622
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.47-20_47-17delGTTT
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.224-20_224-17delGTTT
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.221-20_221-17delGTTT
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*321-20_*321-17delGTTT
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.47-20_47-17delGTTT
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*274-20_*274-17delGTTT
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.375-20_375-17delGTTT
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1412_223+1415delGTTT
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2092
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16280
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2783
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6557
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19936
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1940
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5543
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1494
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: CTTTG
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP

2-216184367-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184367
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184367
    reference: chr 2
allele count: 1
allele frequency: 8.349057391420508e-6
allele num: 119774
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.47-21T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.221-21T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1411T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.375-21T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*274-21T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*321-21T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.224-21T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.47-21T>C
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20653
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2092
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1499
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1617
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5583
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

2-216184368-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184368
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184368
    reference: chr 2
allele count: 1
allele frequency: 8.345016356232058e-6
allele num: 119832
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.47-20G>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1412G>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.47-20G>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.224-20G>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*321-20G>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.375-20G>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.221-20G>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*274-20G>C
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6606
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20863
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16593
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1606
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-216184373-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184373
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184373
    reference: chr 2
allele count: 3
allele frequency: 2.497544081653041e-5
allele num: 120118
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.224-15A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.47-15A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*274-15A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.375-15A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.47-15A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.221-15A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1417A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*321-15A>G
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16896
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2092
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21604
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35356
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5636
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

2-216184377-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184377
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184377
    reference: chr 2
allele count: 1
allele frequency: 8.30937463646486e-6
allele num: 120346
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.224-11T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.47-11T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.47-11T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1421T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*274-11T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.221-11T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*321-11T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.375-11T>C
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6643
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2781
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22137
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17075
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5679
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: T
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

2-216184378-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184378
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184378
    reference: chr 2
allele count: 12
allele frequency: 9.9676052828308e-5
allele num: 120390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1422T>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*321-10T>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.224-10T>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.221-10T>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*274-10T>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.375-10T>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.47-10T>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.47-10T>G
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2782
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17108
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6637
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9769
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1500
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

2-216184380-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184380
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184380
    reference: chr 2
allele count: 78
allele frequency: 6.475393504682208e-4
allele num: 120456
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1424T>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.221-8T>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.224-8T>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.375-8T>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*321-8T>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.47-8T>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.47-8T>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*274-8T>A
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6640
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 17151
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2782
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 22401
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36592
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 3.25e1
  variant carriers: 0
hgvs: c.224-8T>A
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

2-216184384-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184384
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184384
    reference: chr 2
allele count: 1
allele frequency: 8.292148993333113e-6
allele num: 120596
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*274-4T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.375-4T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.47-4T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.47-4T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.224-4T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.221-4T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1428T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*321-4T>C
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6663
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22695
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17278
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9747
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
hgvs: c.224-4T>C
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD

2-216184386-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184386
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184386
    reference: chr 2
allele count: 1
allele frequency: 8.287613333112331e-6
allele num: 120662
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.224-2A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1430A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.375-2A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*321-2A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.47-2A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.221-2A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.47-2A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*274-2A>G
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22768
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6682
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: c.224-2A>G
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

2-216184389-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184389
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184389
    reference: chr 2
allele count: 2
allele frequency: 1.655930715858849e-5
allele num: 120778
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*322A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*275A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.376A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.222A>G
  hgvsp: ENST00000435675.1:c.222A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.48A>G
  hgvsp: ENST00000413174.1:c.48A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1433A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.225A>G
  hgvsp: ENST00000236959.9:c.225A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.48A>G
  hgvsp: ENST00000540518.1:c.48A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6678
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22870
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17430
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1640
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37453
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5738
  bin: 6.75e1
  variant carriers: 0
hgvs: c.225A>G
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD

2-216184395-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184395
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184395
    reference: chr 2
allele count: 2
allele frequency: 1.65456079683648e-5
allele num: 120878
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.231A>G
  hgvsp: ENST00000236959.9:c.231A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*281A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.382A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.54A>G
  hgvsp: ENST00000413174.1:c.54A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.228A>G
  hgvsp: ENST00000435675.1:c.228A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*328A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.54A>G
  hgvsp: ENST00000540518.1:c.54A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1439A>G
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17522
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37634
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu77Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP

2-216184399-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184399
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184399
    reference: chr 2
allele count: 7
allele frequency: 5.789238632416428e-5
allele num: 120914
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.232C>T
  hgvsp: ENSP00000415935.1:p.Arg78Cys
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1443C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*285C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.58C>T
  hgvsp: ENSP00000402393.1:p.Arg20Cys
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.58C>T
  hgvsp: ENSP00000440523.1:p.Arg20Cys
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.386C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.235C>T
  hgvsp: ENSP00000236959.9:p.Arg79Cys
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*332C>T
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22937
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2791
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6707
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9751
  bin: 9.75e1
  variant carriers: 7
hgvs: p.Arg79Cys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD

2-216184400-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184400
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184400
    reference: chr 2
allele count: 6
allele frequency: 4.961630060862662e-5
allele num: 120928
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.233G>A
  hgvsp: ENSP00000415935.1:p.Arg78His
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*333G>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*286G>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.236G>A
  hgvsp: ENSP00000236959.9:p.Arg79His
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.387G>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.59G>A
  hgvsp: ENSP00000440523.1:p.Arg20His
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.59G>A
  hgvsp: ENSP00000402393.1:p.Arg20His
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1444G>A
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6723
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22913
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2786
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17609
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1966
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg79His
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

2-216184400-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184400
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184400
    reference: chr 2
allele count: 1
allele frequency: 8.269383434771103e-6
allele num: 120928
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.236G>T
  hgvsp: ENSP00000236959.9:p.Arg79Leu
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.387G>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*333G>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1444G>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.59G>T
  hgvsp: ENSP00000440523.1:p.Arg20Leu
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.233G>T
  hgvsp: ENSP00000415935.1:p.Arg78Leu
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.59G>T
  hgvsp: ENSP00000402393.1:p.Arg20Leu
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*286G>T
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2786
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22913
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6723
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5740
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9752
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1647
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg79Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

2-216184405-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184405
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184405
    reference: chr 2
allele count: 1
allele frequency: 8.266375690242371e-6
allele num: 120972
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.241A>G
  hgvsp: ENSP00000236959.9:p.Ile81Val
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*291A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*338A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.64A>G
  hgvsp: ENSP00000402393.1:p.Ile22Val
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1449A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.64A>G
  hgvsp: ENSP00000440523.1:p.Ile22Val
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.238A>G
  hgvsp: ENSP00000415935.1:p.Ile80Val
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.392A>G
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17662
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6712
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37773
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile81Val
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD

2-216184407-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184407
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184406
    reference: chr 2
allele count: 7
allele frequency: 5.785889043179263e-5
allele num: 120984
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.68delC
  hgvsp: ENSP00000402393.1:p.Pro23GlnfsTer15
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*295delC
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.68delC
  hgvsp: ENSP00000440523.1:p.Pro23GlnfsTer15
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.396delC
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*342delC
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.245delC
  hgvsp: ENSP00000236959.9:p.Pro82GlnfsTer15
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1453delC
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.242delC
  hgvsp: ENSP00000415935.1:p.Pro81GlnfsTer15
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17684
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6714
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22919
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37807
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro82GlnfsTer15
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: TC
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

2-216184415-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184415
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184415
    reference: chr 2
allele count: 1
allele frequency: 8.261731658955718e-6
allele num: 121040
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1459A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.74A>G
  hgvsp: ENSP00000402393.1:p.Asp25Gly
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.74A>G
  hgvsp: ENSP00000440523.1:p.Asp25Gly
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*348A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.402A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*301A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.251A>G
  hgvsp: ENSP00000236959.9:p.Asp84Gly
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.248A>G
  hgvsp: ENSP00000415935.1:p.Asp83Gly
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17739
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5762
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asp84Gly
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

2-216184424-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184424
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184424
    reference: chr 2
allele count: 1
allele frequency: 8.264736024331383e-6
allele num: 120996
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1468A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.83A>G
  hgvsp: ENSP00000440523.1:p.Asp28Gly
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.260A>G
  hgvsp: ENSP00000236959.9:p.Asp87Gly
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.83A>G
  hgvsp: ENSP00000402393.1:p.Asp28Gly
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*357A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*310A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.257A>G
  hgvsp: ENSP00000415935.1:p.Asp86Gly
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.411A>G
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6723
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22788
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1639
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp87Gly
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

2-216184426-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184426
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184427
    reference: chr 2
allele count: 1
allele frequency: 8.264462809917356e-6
allele num: 121000
alternate allele: AT
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.263dupT
  hgvsp: ENSP00000236959.9:p.Met88IlefsTer5
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1471dupT
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.260dupT
  hgvsp: ENSP00000415935.1:p.Met87IlefsTer5
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*360dupT
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.86dupT
  hgvsp: ENSP00000402393.1:p.Met29IlefsTer5
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.86dupT
  hgvsp: ENSP00000440523.1:p.Met29IlefsTer5
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*313dupT
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.414dupT
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22783
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1638
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Met88IlefsTer5
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

2-216184426-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184426
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184426
    reference: chr 2
allele count: 5
allele frequency: 4.132231404958678e-5
allele num: 121000
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.413A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.85A>G
  hgvsp: ENSP00000440523.1:p.Met29Val
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.259A>G
  hgvsp: ENSP00000415935.1:p.Met87Val
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*359A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.85A>G
  hgvsp: ENSP00000402393.1:p.Met29Val
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*312A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.262A>G
  hgvsp: ENSP00000236959.9:p.Met88Val
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1470A>G
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: missense
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22783
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1963
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37827
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5751
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Met88Val
num of homozygotes: 1
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

2-216184429-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184429
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184429
    reference: chr 2
allele count: 1
allele frequency: 8.266512358435975e-6
allele num: 120970
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.88G>A
  hgvsp: ENSP00000440523.1:p.Ala30Thr
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.265G>A
  hgvsp: ENSP00000236959.9:p.Ala89Thr
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.88G>A
  hgvsp: ENSP00000402393.1:p.Ala30Thr
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*315G>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.416G>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*362G>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.262G>A
  hgvsp: ENSP00000415935.1:p.Ala88Thr
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1473G>A
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17797
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6734
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala89Thr
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP

2-216184436-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184436
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184436
    reference: chr 2
allele count: 1
allele frequency: 8.272393368849475e-6
allele num: 120884
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.269T>C
  hgvsp: ENSP00000415935.1:p.Leu90Pro
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.95T>C
  hgvsp: ENSP00000402393.1:p.Leu32Pro
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.95T>C
  hgvsp: ENSP00000440523.1:p.Leu32Pro
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1480T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.272T>C
  hgvsp: ENSP00000236959.9:p.Leu91Pro
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.423T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*369T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*322T>C
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17813
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22493
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1627
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37542
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu91Pro
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

2-216184443-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184443
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184443
    reference: chr 2
allele count: 1
allele frequency: 8.281162012653616e-6
allele num: 120756
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.102C>T
  hgvsp: ENST00000540518.1:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.102C>T
  hgvsp: ENST00000413174.1:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*376C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1487C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.276C>T
  hgvsp: ENST00000435675.1:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.279C>T
  hgvsp: ENST00000236959.9:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*329C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.430C>T
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 22149
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17838
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6733
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2785
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9746
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37226
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Phe93Phe
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

2-216184445-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184445
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184445
    reference: chr 2
allele count: 203
allele frequency: 1.681883709754926e-3
allele num: 120698
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1489A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.104A>G
  hgvsp: ENSP00000440523.1:p.Asn35Ser
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.432A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*331A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.281A>G
  hgvsp: ENSP00000236959.9:p.Asn94Ser
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.104A>G
  hgvsp: ENSP00000402393.1:p.Asn35Ser
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.278A>G
  hgvsp: ENSP00000415935.1:p.Asn93Ser
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*378A>G
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2784
  bin: 3.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 6693
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 9.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 4.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 5.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2092
  bin: 4.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 17801
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 21988
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asn94Ser
num of homozygotes: 2
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

2-216184450-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184450
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184450
    reference: chr 2
allele count: 1
allele frequency: 8.304268393954492e-6
allele num: 120420
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.437A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1494A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.109A>G
  hgvsp: ENSP00000402393.1:p.Ile37Val
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*383A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.286A>G
  hgvsp: ENSP00000236959.9:p.Ile96Val
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*336A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.109A>G
  hgvsp: ENSP00000440523.1:p.Ile37Val
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.283A>G
  hgvsp: ENSP00000415935.1:p.Ile95Val
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2786
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21239
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17779
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6738
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36146
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile96Val
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

2-216184451-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184451
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184451
    reference: chr 2
allele count: 2
allele frequency: 1.660798511924533e-5
allele num: 120424
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.110T>C
  hgvsp: ENSP00000440523.1:p.Ile37Thr
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.287T>C
  hgvsp: ENSP00000236959.9:p.Ile96Thr
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.110T>C
  hgvsp: ENSP00000402393.1:p.Ile37Thr
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1495T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.284T>C
  hgvsp: ENSP00000415935.1:p.Ile95Thr
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.438T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*384T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*337T>C
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21221
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17787
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2785
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1602
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1473
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ile96Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

2-216184462-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184462
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184462
    reference: chr 2
allele count: 1
allele frequency: 8.35812911637859e-6
allele num: 119644
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.441+8C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.290+8C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.113+8C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1506C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.113+8C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*340+8C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*387+8C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.287+8C>T
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17228
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18599
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6740
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5470
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2358
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9722
  bin: 9.75e1
  variant carriers: 1
hgvs: c.290+8C>T
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ

2-216184465-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184465
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184464
    reference: chr 2
allele count: 1
allele frequency: 8.380262805041566e-6
allele num: 119328
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1512delA
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.441+14delA
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.113+14delA
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.113+14delA
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.290+14delA
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*340+14delA
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*387+14delA
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.287+14delA
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16913
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2792
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6701
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17573
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9719
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 995
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1887
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1458
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: GA
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

2-216184468-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184468
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184468
    reference: chr 2
allele count: 1
allele frequency: 8.399690891375198e-6
allele num: 119052
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.290+14A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.441+14A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.113+14A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.287+14A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.113+14A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*340+14A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*387+14A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1512A>G
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16326
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16339
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3986
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6613
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1971
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

2-216184470-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184470
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184470
    reference: chr 2
allele count: 1
allele frequency: 8.425877555147369e-6
allele num: 118682
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.287+16T>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.441+16T>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*387+16T>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1514T>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.113+16T>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.113+16T>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.290+16T>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*340+16T>G
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6553
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4166
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15684
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4769
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3886
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5061
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

2-216184473-A-ATCC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184473
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184476
    reference: chr 2
allele count: 2
allele frequency: 1.688732774925696e-5
allele num: 118432
alternate allele: ATCC
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*340+19_*340+20insTCC
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*387+19_*387+20insTCC
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1517_223+1518insTCC
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.113+19_113+20insTCC
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.290+19_290+20insTCC
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.441+19_441+20insTCC
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.113+19_113+20insTCC
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.287+19_287+20insTCC
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 14795
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5588
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14844
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1863
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3019
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4318
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum

2-216184475-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184475
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184475
    reference: chr 2
allele count: 2
allele frequency: 1.69785052124011e-5
allele num: 117796
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.113+21T>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.287+21T>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.290+21T>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*387+21T>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.441+21T>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.113+21T>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*340+21T>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1519T>A
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5450
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13597
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14098
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6276
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6718
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9716
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1482
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2013
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3613
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

2-216184477-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184477
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184477
    reference: chr 2
allele count: 15
allele frequency: 1.274708091846967e-4
allele num: 117674
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.113+23T>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*387+23T>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.113+23T>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.441+23T>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1521T>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.287+23T>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.290+23T>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*340+23T>G
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13000
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13974
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5833
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1775
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1573
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3853
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1457
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2589
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1826
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 1
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

2-216184480-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184480
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184480
    reference: chr 2
allele count: 1
allele frequency: 8.516871923280018e-6
allele num: 117414
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*387+26A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.113+26A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*340+26A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.113+26A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.290+26A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.287+26A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1524A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.441+26A>G
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11639
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6979
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6033
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8090
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1441
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2917
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1824
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1444
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD

2-216184481-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184481
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184481
    reference: chr 2
allele count: 1
allele frequency: 8.535919147773831e-6
allele num: 117152
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1525C>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.441+27C>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*387+27C>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.113+27C>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.113+27C>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.290+27C>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*340+27C>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.287+27C>G
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6093
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8105
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13312
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7004
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11529
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1810
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4419
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ

2-216184482-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184482
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184482
    reference: chr 2
allele count: 28064
allele frequency: 2.404427766068644e-1
allele num: 116718
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*387+28A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.113+28A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.113+28A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.441+28A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*340+28A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.287+28A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1526A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.290+28A>G
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 6.25e1
  variant carriers: 434
genotype depth: GenotypeDepth
  all individuals: 7869
  bin: 1.75e1
  variant carriers: 2948
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 4.25e1
  variant carriers: 1248
genotype depth: GenotypeDepth
  all individuals: 6262
  bin: 3.25e1
  variant carriers: 3228
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.75e1
  variant carriers: 333
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 6.75e1
  variant carriers: 392
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 9.75e1
  variant carriers: 997
genotype depth: GenotypeDepth
  all individuals: 8628
  bin: 1.25e1
  variant carriers: 1006
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 7.5e0
  variant carriers: 120
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 8.75e1
  variant carriers: 249
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.25e1
  variant carriers: 186
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 5.75e1
  variant carriers: 447
genotype depth: GenotypeDepth
  all individuals: 9719
  bin: 2.25e1
  variant carriers: 4719
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 5.25e1
  variant carriers: 501
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 4.75e1
  variant carriers: 817
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.25e1
  variant carriers: 339
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 8.25e1
  variant carriers: 297
genotype depth: GenotypeDepth
  all individuals: 11758
  bin: 2.75e1
  variant carriers: 4414
genotype depth: GenotypeDepth
  all individuals: 3200
  bin: 3.75e1
  variant carriers: 2019
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 4.25e1
  variant carriers: 101
genotype quality: GenotypeQuality
  all individuals: 4710
  bin: 2.25e1
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 1.75e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 2032
  bin: 2.75e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 1.25e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 7.25e1
  variant carriers: 183
genotype quality: GenotypeQuality
  all individuals: 3483
  bin: 3.25e1
  variant carriers: 68
num of homozygotes: 3580
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum

2-216184485-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184485
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184485
    reference: chr 2
allele count: 1
allele frequency: 8.702311333890281e-6
allele num: 114912
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.113+31T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.113+31T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1529T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*340+31T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.290+31T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*387+31T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.287+31T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.441+31T>C
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4965
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7261
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11946
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9332
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13908
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8267
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1544
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6347
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4866
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum

2-216184488-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184488
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184488
    reference: chr 2
allele count: 4
allele frequency: 3.525222970352875e-5
allele num: 113468
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.287+34C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.113+34C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*387+34C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.441+34C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1532C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.290+34C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.113+34C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*340+34C>T
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14226
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12692
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3913
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6826
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9480
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6080
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3856
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8147
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8074
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

2-216184489-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184489
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184489
    reference: chr 2
allele count: 1
allele frequency: 8.8281512085739e-6
allele num: 113274
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1533G>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.287+35G>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.290+35G>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.113+35G>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.113+35G>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*387+35G>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.441+35G>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*340+35G>A
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9470
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12653
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14313
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6882
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3847
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12784
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 992
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6037
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

2-216184492-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184492
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184492
    reference: chr 2
allele count: 1
allele frequency: 8.858651358917118e-6
allele num: 112884
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*387+38C>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.113+38C>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.113+38C>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.290+38C>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1536C>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.287+38C>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*340+38C>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.441+38C>G
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8271
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14291
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3415
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6797
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14059
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2559
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8192
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3944
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1011
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum

2-216184495-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184495
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184495
    reference: chr 2
allele count: 1
allele frequency: 8.907733694393473e-6
allele num: 112262
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.113+41A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.287+41A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.290+41A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*387+41A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1539A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.113+41A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*340+41A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.441+41A>G
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3024
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6795
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15401
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7861
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8978
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7365
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3725
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

2-216184496-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184496
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184496
    reference: chr 2
allele count: 3
allele frequency: 2.684900121715472e-5
allele num: 111736
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*340+42C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.113+42C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*387+42C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1540C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.113+42C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.287+42C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.290+42C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.441+42C>T
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14107
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6753
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3898
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15380
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2382
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1192
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7873
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8066
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4053
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

2-216184497-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184497
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184497
    reference: chr 2
allele count: 8
allele frequency: 7.182747041606063e-5
allele num: 111378
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.441+43G>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.113+43G>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1541G>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.290+43G>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.113+43G>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*340+43G>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*387+43G>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.287+43G>A
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4039
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14066
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6375
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15301
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7768
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8660
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6913
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

2-216184499-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216184499
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216184499
    reference: chr 2
allele count: 1
allele frequency: 8.998956121089954e-6
allele num: 111124
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*387+45C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.113+45C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.441+45C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.290+45C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*340+45C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.223+1543C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.113+45C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.287+45C>T
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5699
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14022
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8417
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4241
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15171
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7507
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 901
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1994
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2267
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7001
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

2-216189915-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216189915
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216189915
    reference: chr 2
allele count: 4
allele frequency: 3.295707341188102e-5
allele num: 121370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.224-49C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*341-49C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.288-49C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.114-49C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.454C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.291-49C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*388-49C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.114-49C>T
  variant of: http://identifiers.org/hgnc/794
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3562
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9595
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4083
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11740
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3537
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2668
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1260
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

2-216189917-CAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216189917
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216189915
    reference: chr 2
allele count: 39
allele frequency: 3.213208759701419e-4
allele num: 121374
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.224-46_224-45delAT
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*388-46_*388-45delAT
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.291-46_291-45delAT
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*341-46_*341-45delAT
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.114-46_114-45delAT
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.457_458delAT
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.114-46_114-45delAT
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.288-46_288-45delAT
  variant of: http://identifiers.org/hgnc/794
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4437
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9595
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4083
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11748
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4163
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4602
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3537
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: CAT
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS

2-216189918-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216189918
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216189918
    reference: chr 2
allele count: 211
allele frequency: 1.739488870568838e-3
allele num: 121300
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.288-46A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.114-46A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.457A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.224-46A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.291-46A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*341-46A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.114-46A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*388-46A>G
  variant of: http://identifiers.org/hgnc/794
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 9.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 4.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 4665
  bin: 5.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3556
  bin: 6.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 8.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4078
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4162
  bin: 5.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 11745
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2671
  bin: 6.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 7.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 4429
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 9596
  bin: 3.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 2
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/2-216189918-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216189918
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216189918
    reference: chr 2
allele count: 7
allele frequency: 5.770816158285244e-5
allele num: 121300
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.457A>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*388-46A>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.114-46A>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.224-46A>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.291-46A>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.288-46A>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.114-46A>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*341-46A>C
  variant of: http://identifiers.org/hgnc/794
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11745
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4665
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4429
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3556
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2671
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4078
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1063
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17500
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1076
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

2-216189919-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216189919
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216189919
    reference: chr 2
allele count: 2
allele frequency: 1.64866870002473e-5
allele num: 121310
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.114-45T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*388-45T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.114-45T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.288-45T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.458T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.224-45T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*341-45T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.291-45T>C
  variant of: http://identifiers.org/hgnc/794
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11826
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9644
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3545
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4076
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4651
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2153
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3522
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33319
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17631
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/2-216189921-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216189921
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216189921
    reference: chr 2
allele count: 2
allele frequency: 1.647772211969417e-5
allele num: 121376
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*388-43A>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.288-43A>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.291-43A>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.114-43A>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.460A>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.224-43A>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*341-43A>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.114-43A>C
  variant of: http://identifiers.org/hgnc/794
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11836
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4588
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4652
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4076
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9668
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2661
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3545
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1256
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4294
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

2-216189927-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216189927
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216189927
    reference: chr 2
allele count: 565
allele frequency: 4.654803097709672e-3
allele num: 121380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*341-37C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.288-37C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.291-37C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.114-37C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.224-37C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*388-37C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.466C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.114-37C>T
  variant of: http://identifiers.org/hgnc/794
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9666
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4058
  bin: 4.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 9.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 3533
  bin: 6.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11835
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3566
  bin: 9.75e1
  variant carriers: 127
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 8.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4429
  bin: 3.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 4128
  bin: 5.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 7.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 7.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 8.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 4.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 4645
  bin: 5.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 6.75e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17698
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 13
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

2-216189928-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216189928
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216189928
    reference: chr 2
allele count: 5
allele frequency: 4.119159032491926e-5
allele num: 121384
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.114-36T>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.467T>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.224-36T>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*388-36T>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.114-36T>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.288-36T>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.291-36T>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*341-36T>G
  variant of: http://identifiers.org/hgnc/794
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11994
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9787
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4560
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4620
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4090
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4450
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17969
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1085
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

2-216189931-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216189931
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216189931
    reference: chr 2
allele count: 7
allele frequency: 5.766822645488697e-5
allele num: 121384
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.291-33T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.470T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*388-33T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.114-33T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.288-33T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.114-33T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.224-33T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*341-33T>C
  variant of: http://identifiers.org/hgnc/794
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11994
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9787
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3515
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4062
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4620
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4090
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1270
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4368
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

2-216189933-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216189933
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216189933
    reference: chr 2
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*341-31A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.114-31A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.224-31A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.472A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*388-31A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.291-31A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.114-31A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.288-31A>G
  variant of: http://identifiers.org/hgnc/794
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4062
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4618
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11995
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4090
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3515
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17985
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1270
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32988
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/2-216189934-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216189934
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216189934
    reference: chr 2
allele count: 9
allele frequency: 7.414608426290554e-5
allele num: 121382
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.473A>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.291-30A>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.114-30A>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.114-30A>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*388-30A>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.288-30A>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*341-30A>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.224-30A>C
  variant of: http://identifiers.org/hgnc/794
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4618
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9792
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11996
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4562
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4087
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4059
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4368
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17999
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

2-216189942-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216189942
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216189942
    reference: chr 2
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.291-22C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*341-22C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.481C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*388-22C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.114-22C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.288-22C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.224-22C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.114-22C>T
  variant of: http://identifiers.org/hgnc/794
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11999
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4618
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9809
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4060
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4088
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4369
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

2-216189943-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216189943
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216189943
    reference: chr 2
allele count: 6
allele frequency: 4.942502224126001e-5
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.114-21A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*388-21A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.291-21A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.288-21A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.114-21A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.482A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*341-21A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.224-21A>G
  variant of: http://identifiers.org/hgnc/794
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11998
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4087
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9812
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4616
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4060
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3476
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4369
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32987
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 18015
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP

2-216189944-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216189944
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216189944
    reference: chr 2
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.224-20G>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.483G>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.114-20G>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.291-20G>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.288-20G>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.114-20G>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*388-20G>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*341-20G>A
  variant of: http://identifiers.org/hgnc/794
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12001
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9811
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4087
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4615
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4060
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18018
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

2-216189948-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216189948
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216189948
    reference: chr 2
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.224-16C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.291-16C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.114-16C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*388-16C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.487C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.288-16C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*341-16C>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.114-16C>T
  variant of: http://identifiers.org/hgnc/794
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4615
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4062
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12002
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4087
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4560
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4457
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18017
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1277
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

2-216189949-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216189949
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216189949
    reference: chr 2
allele count: 4
allele frequency: 3.295001482750667e-5
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.291-15G>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.224-15G>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.488G>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.288-15G>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.114-15G>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.114-15G>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*388-15G>A
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*341-15G>A
  variant of: http://identifiers.org/hgnc/794
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3491
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4088
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4061
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12002
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1277
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff

2-216189949-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216189949
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216189949
    reference: chr 2
allele count: 2
allele frequency: 1.647500741375333e-5
allele num: 121396
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.114-15G>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.488G>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.114-15G>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.224-15G>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.291-15G>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*341-15G>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*388-15G>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.288-15G>C
  variant of: http://identifiers.org/hgnc/794
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12002
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4061
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4088
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3491
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4456
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18019
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

2-216189949-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216189949
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216189949
    reference: chr 2
allele count: 28
allele frequency: 2.306501037925467e-4
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.488G>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.114-15G>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.288-15G>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.224-15G>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.114-15G>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*341-15G>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*388-15G>T
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.291-15G>T
  variant of: http://identifiers.org/hgnc/794
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12002
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4088
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4061
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3491
  bin: 9.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

2-216189951-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216189951
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216189950
    reference: chr 2
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*388-10delT
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.288-10delT
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.114-10delT
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.224-10delT
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.493delT
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*341-10delT
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.114-10delT
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.291-10delT
  variant of: http://identifiers.org/hgnc/794
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4060
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9828
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4087
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3479
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4616
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12014
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4457
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18030
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4372
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: CT
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

2-216189957-T-TTA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216189957
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216189959
    reference: chr 2
allele count: 2
allele frequency: 1.647473599235572e-5
allele num: 121398
alternate allele: TTA
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.224-6_224-5insAT
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.114-6_114-5insAT
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.114-6_114-5insAT
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.497_498insAT
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*388-6_*388-5insAT
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*341-6_*341-5insAT
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.291-6_291-5insAT
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.288-6_288-5insAT
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4554
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4087
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4616
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4054
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3510
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12034
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4372
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
hgvs: c.291-6_291-5insAT
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-216189959-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216189959
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216189959
    reference: chr 2
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*341-5T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.291-5T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.224-5T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.114-5T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.288-5T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.498T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.114-5T>C
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*388-5T>C
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3479
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4054
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3510
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4554
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12034
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4087
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4616
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18051
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1279
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4373
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 8.75e1
  variant carriers: 0
hgvs: c.291-5T>C
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-216189960-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216189960
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216189960
    reference: chr 2
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*341-4A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.291-4A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.288-4A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.114-4A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.499A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.114-4A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.224-4A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*388-4A>G
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4056
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3510
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4087
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4554
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4617
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12034
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3479
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4372
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
hgvs: c.291-4A>G
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

2-216189962-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 216189962
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 216189962
    reference: chr 2
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000402393
  ensembl transcript: ENST00000413174
  gene symbol: ATIC
  hgvsc: ENST00000413174.1:c.114-2A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000440523
  ensembl transcript: ENST00000540518
  gene symbol: ATIC
  hgvsc: ENST00000540518.1:c.114-2A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000406792
  ensembl transcript: ENST00000443953
  gene symbol: ATIC
  hgvsc: ENST00000443953.1:c.*388-2A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000388675
  ensembl transcript: ENST00000444305
  gene symbol: ATIC
  hgvsc: ENST00000444305.1:c.224-2A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000415935
  ensembl transcript: ENST00000435675
  gene symbol: ATIC
  hgvsc: ENST00000435675.1:c.288-2A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000394317
  ensembl transcript: ENST00000427397
  gene symbol: ATIC
  hgvsc: ENST00000427397.1:c.*341-2A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000138363
  ensembl protein: ENSP00000236959
  ensembl transcript: ENST00000236959
  gene symbol: ATIC
  hgvsc: ENST00000236959.9:c.291-2A>G
  variant of: http://identifiers.org/hgnc/794
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000138363
  ensembl transcript: ENST00000488712
  gene symbol: ATIC
  hgvsc: ENST00000488712.1:n.501A>G
  variant of: http://identifiers.org/hgnc/794
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4616
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4055
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4087
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12035
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3510
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4554
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 7.25e1
  variant carriers: 0
hgvs: c.291-2A>G
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 561
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2785
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2378
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2041
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40975
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2489
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998860433035446e-5
allele num: 66692
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.43e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.071e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.711e1

MQRankSum
type: SiteQuality
SIO_000300: -6.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.24e0

DP
type: SiteQuality
SIO_000300: 3.27233e6

GenotypeQuality
all individuals: 715
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1247
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1932
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2448
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26551
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1496
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9764
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1492
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1078
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16332
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10164
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.18427285646613e-4
allele num: 8444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.766e0

VQSLOD
type: SiteQuality
SIO_000300: 8.72e-1

QD
type: SiteQuality
SIO_000300: 1.518e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 3.757e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.28e0

DP
type: SiteQuality
SIO_000300: 1.87915e6

GenotypeQuality
all individuals: 718
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1617
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9761
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1701
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 985
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1081
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1496
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1951
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5532
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.179245283018868e-4
allele num: 8480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10176
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16358
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.97e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.903896e6

QD
type: SiteQuality
SIO_000300: 1.421e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.47e0

MQRankSum
type: SiteQuality
SIO_000300: 2.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeQuality
all individuals: 1950
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1500
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1377
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9761
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variant carriers: 1

GenotypeQuality
all individuals: 5564
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524855138761818e-5
allele num: 65580
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.75e-2

DP
type: SiteQuality
SIO_000300: 1.910177e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

FS
type: SiteQuality
SIO_000300: 5.927e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.011e0

QD
type: SiteQuality
SIO_000300: 1.798e1

MQRankSum
type: SiteQuality
SIO_000300: 7.46e-1

MQ
type: SiteQuality
SIO_000300: 6.051e1

VQSLOD
type: SiteQuality
SIO_000300: 8.45e-1

GenotypeQuality
all individuals: 47
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 12

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1610
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10190
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.751969193068441e-5
allele num: 11426
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.675092891514893e-4
allele num: 65668
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16362
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.95e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.4e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.256e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.8e-2

QD
type: SiteQuality
SIO_000300: 1.014e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.93e-1

MQ
type: SiteQuality
SIO_000300: 5.69e1

DP
type: SiteQuality
SIO_000300: 1.919595e6

GenotypeQuality
all individuals: 423
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 87
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.811616954474098e-5
allele num: 10192
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65768
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.06e0

MQRankSum
type: SiteQuality
SIO_000300: 4.95e-1

MQ
type: SiteQuality
SIO_000300: 5.878e1

FS
type: SiteQuality
SIO_000300: 1.111e0

VQSLOD
type: SiteQuality
SIO_000300: 2.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.525e1

DP
type: SiteQuality
SIO_000300: 1.927927e6

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 323
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GenotypeQuality
all individuals: 1491
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.518833535844471e-4
allele num: 6584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65802
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

VQSLOD
type: SiteQuality
SIO_000300: -1.406e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.377e0

DP
type: SiteQuality
SIO_000300: 1.931768e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.319e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.922e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.107e0

GenotypeQuality
all individuals: 715
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 494
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GenotypeQuality
all individuals: 10
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9763
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variant carriers: 3

GenotypeQuality
all individuals: 1628
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1499
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.030211205721039e-5
allele num: 66002
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.792401096748923e-5
allele num: 10212
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.942237e6

FS
type: SiteQuality
SIO_000300: 7.547e0

MQRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.485e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.87e-1

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 251
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GenotypeQuality
all individuals: 25
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GenotypeQuality
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GenotypeQuality
all individuals: 88
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 9761
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variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511624391571182e-5
allele num: 66154
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10226
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.950242e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.87e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.28e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.366e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.517e0

VQSLOD
type: SiteQuality
SIO_000300: -9.586e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1625
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GenotypeQuality
all individuals: 239
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10228
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 7.309941520467836e-4
allele num: 16416
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.943e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.69e-1

FS
type: SiteQuality
SIO_000300: 2.972e0

DP
type: SiteQuality
SIO_000300: 1.951759e6

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

QD
type: SiteQuality
SIO_000300: 1.102e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.63e-1

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 76

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 713
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GenotypeQuality
all individuals: 1074
bin: 9.25e1
variant carriers: 2

Latino
type: Population
allele count: 2
allele frequency: 1.739432944859976e-4
allele num: 11498
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.218175173589962e-4
allele num: 16418
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.108647450110865e-3
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.359106010268801e-4
allele num: 66220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 64
allele frequency: 6.256109481915934e-3
allele num: 10230
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.570000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.14e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.77e-1

DP
type: SiteQuality
SIO_000300: 1.955754e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 7.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.32e-1

QD
type: SiteQuality
SIO_000300: 1.215e1

GenotypeQuality
all individuals: 37065
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 148
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GenotypeQuality
all individuals: 226
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GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 114
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GenotypeQuality
all individuals: 60
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GenotypeQuality
all individuals: 1964
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GenotypeQuality
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GenotypeQuality
all individuals: 1494
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GenotypeQuality
all individuals: 141
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507567991316408e-5
allele num: 66332
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10236
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

MQRankSum
type: SiteQuality
SIO_000300: -1.308e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.1e-1

FS
type: SiteQuality
SIO_000300: 9.35e0

VQSLOD
type: SiteQuality
SIO_000300: -1.651e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.44e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

DP
type: SiteQuality
SIO_000300: 1.957725e6

QD
type: SiteQuality
SIO_000300: 9.85e0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1963
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1493
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5710
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9747
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1635
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37192
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506568639267205e-5
allele num: 66376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.104e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.68e0

VQSLOD
type: SiteQuality
SIO_000300: -6.163e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.061e0

DP
type: SiteQuality
SIO_000300: 1.959671e6

FS
type: SiteQuality
SIO_000300: 1.335e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.23e-1

QD
type: SiteQuality
SIO_000300: 7.91e0

GenotypeQuality
all individuals: 1964
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1489
bin: 8.25e1
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GenotypeQuality
all individuals: 9748
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.95160031225605e-4
allele num: 10248
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.751e-1

MQ
type: SiteQuality
SIO_000300: 5.844e1

DP
type: SiteQuality
SIO_000300: 1.962275e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.67e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.5e-2

FS
type: SiteQuality
SIO_000300: 1.739e0

QD
type: SiteQuality
SIO_000300: 1.148e1

GenotypeQuality
all individuals: 9748
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 70
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1647
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1966
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5754
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1489
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1075
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.007609251406057e-5
allele num: 66498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.080000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.053e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.189e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.13e0

DP
type: SiteQuality
SIO_000300: 1.96467e6

GenotypeQuality
all individuals: 37659
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1969
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variant carriers: 0

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1653
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variant carriers: 0

GenotypeQuality
all individuals: 86
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variant carriers: 0

GenotypeQuality
all individuals: 54
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variant carriers: 0

GenotypeQuality
all individuals: 1075
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 36
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 5744
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.020928554245851e-5
allele num: 66512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.076810889645114e-5
allele num: 16456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -8.45e-1

MQ
type: SiteQuality
SIO_000300: 5.983e1

VQSLOD
type: SiteQuality
SIO_000300: 4.01e0

DP
type: SiteQuality
SIO_000300: 1.966281e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.69e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.152e1

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37711
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 37
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variant carriers: 0

GenotypeQuality
all individuals: 1647
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variant carriers: 0

GenotypeQuality
all individuals: 9752
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variant carriers: 6

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 1492
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GenotypeQuality
all individuals: 46
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variant carriers: 0

GenotypeQuality
all individuals: 1075
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variant carriers: 0

GenotypeQuality
all individuals: 5740
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variant carriers: 0

GenotypeQuality
all individuals: 292
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variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.019301304792256e-5
allele num: 66524
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.966874e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.99e-1

FS
type: SiteQuality
SIO_000300: 5.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

QD
type: SiteQuality
SIO_000300: 1.243e1

MQRankSum
type: SiteQuality
SIO_000300: -3.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.41e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

GenotypeQuality
all individuals: 1492
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
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variant carriers: 0

GenotypeQuality
all individuals: 73
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variant carriers: 0

GenotypeQuality
all individuals: 52
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 37
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variant carriers: 0

GenotypeQuality
all individuals: 718
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variant carriers: 0

GenotypeQuality
all individuals: 37711
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1966
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1075
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66524
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.664009703690868e-5
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.243e1

MQ
type: SiteQuality
SIO_000300: 5.958e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e-1

FS
type: SiteQuality
SIO_000300: 5.28e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.99e-1

DP
type: SiteQuality
SIO_000300: 1.966874e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

GenotypeQuality
all individuals: 39
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1968
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 715
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variant carriers: 0

GenotypeQuality
all individuals: 1645
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.662508662508663e-5
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.117e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.01e-1

DP
type: SiteQuality
SIO_000300: 1.967086e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.286e1

GenotypeQuality
all individuals: 9752
bin: 9.75e1
variant carriers: 7

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
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GenotypeQuality
all individuals: 1647
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5757
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GenotypeQuality
all individuals: 1487
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variant carriers: 0

GenotypeQuality
all individuals: 1968
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1076
bin: 9.25e1
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GenotypeQuality
all individuals: 717
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.051682692307692e-4
allele num: 66560
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.14e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.967604e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.469e1

MQ
type: SiteQuality
SIO_000300: 5.966e1

VQSLOD
type: SiteQuality
SIO_000300: 4.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.251e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-3

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1964
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1642
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 9749
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 37907
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variant carriers: 0

GenotypeQuality
all individuals: 1490
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1075
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501817198810561e-5
allele num: 66586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

MQRankSum
type: SiteQuality
SIO_000300: -2.71e-1

DP
type: SiteQuality
SIO_000300: 1.968118e6

QD
type: SiteQuality
SIO_000300: 1.147e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.415e0

FS
type: SiteQuality
SIO_000300: 9.050000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.59e0

VQSLOD
type: SiteQuality
SIO_000300: -1.123e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 54
bin: 5.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502313562886846e-5
allele num: 66564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.965e1

VQSLOD
type: SiteQuality
SIO_000300: -1.173e0

DP
type: SiteQuality
SIO_000300: 1.967628e6

MQRankSum
type: SiteQuality
SIO_000300: -4.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.46e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502223290469895e-5
allele num: 66568
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.6e-1

FS
type: SiteQuality
SIO_000300: 4.455e0

VQSLOD
type: SiteQuality
SIO_000300: 9.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.5e-1

QD
type: SiteQuality
SIO_000300: 1.471e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.53e-1

DP
type: SiteQuality
SIO_000300: 1.967945e6

MQ
type: SiteQuality
SIO_000300: 5.905e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.186e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.948558067030398e-4
allele num: 10264
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.822157434402332e-4
allele num: 16464
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.905e1

MQRankSum
type: SiteQuality
SIO_000300: 4.5e-1

DP
type: SiteQuality
SIO_000300: 1.967945e6

QD
type: SiteQuality
SIO_000300: 1.471e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.186e-1

FS
type: SiteQuality
SIO_000300: 4.455e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.6e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.5e-1

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 30
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GenotypeQuality
all individuals: 1483
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502765087761481e-5
allele num: 66544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

QD
type: SiteQuality
SIO_000300: 1.062e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.278e0

MQRankSum
type: SiteQuality
SIO_000300: 3.27e-1

FS
type: SiteQuality
SIO_000300: 2.038e0

DP
type: SiteQuality
SIO_000300: 1.967516e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.668515950069348e-5
allele num: 11536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.97e1

FS
type: SiteQuality
SIO_000300: 1.009e0

QD
type: SiteQuality
SIO_000300: 1.046e1

DP
type: SiteQuality
SIO_000300: 1.965161e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.84e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5700
bin: 6.75e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505479947007106e-5
allele num: 66424
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10238
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16418
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.183e0

FS
type: SiteQuality
SIO_000300: 1.703e0

VQSLOD
type: SiteQuality
SIO_000300: -3.727e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

QD
type: SiteQuality
SIO_000300: 3.424e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

DP
type: SiteQuality
SIO_000300: 1.962408e6

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 201

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1609
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 176
allele frequency: 1.719757670510064e-2
allele num: 10234
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.012774162448783e-5
allele num: 66384
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.337265787647467e-4
allele num: 11528
num of homozygotes: 0

South Asian
type: Population
allele count: 19
allele frequency: 1.157548434263434e-3
allele num: 16414
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.964998e6

MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.81e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.15e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

FS
type: SiteQuality
SIO_000300: 1.243e0

VQSLOD
type: SiteQuality
SIO_000300: 5.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.72e0

QD
type: SiteQuality
SIO_000300: 1.426e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.3e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1473
bin: 8.25e1
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GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.103515625e-5
allele num: 16384
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10208
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.96e-1

MQ
type: SiteQuality
SIO_000300: 5.901e1

QD
type: SiteQuality
SIO_000300: 8.119999999999999e0

FS
type: SiteQuality
SIO_000300: 1.738e0

MQRankSum
type: SiteQuality
SIO_000300: -2.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.56e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.542999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e0

DP
type: SiteQuality
SIO_000300: 1.952221e6

GenotypeQuality
all individuals: 1083
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
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GenotypeQuality
all individuals: 55
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GenotypeQuality
all individuals: 362
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GenotypeQuality
all individuals: 172
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.020874241005347e-5
allele num: 66206
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10204
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.361e0

QD
type: SiteQuality
SIO_000300: 1.292e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 7.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.18e0

DP
type: SiteQuality
SIO_000300: 1.95235e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.2e-1

MQ
type: SiteQuality
SIO_000300: 5.914e1

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1900
bin: 7.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.854158454867954e-5
allele num: 10148
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65690
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.384e0

VQSLOD
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QD
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InbreedingCoeff
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SIO_000300: -4.0e-4

ReadPosRankSum
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SIO_000300: 1.59e0

DP
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SIO_000300: 1.922293e6

MQRankSum
type: SiteQuality
SIO_000300: -5.3e-1

FS
type: SiteQuality
SIO_000300: 2.392e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.811e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.527137228551358e-5
allele num: 65482
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10128
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.01e0

MQRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

FS
type: SiteQuality
SIO_000300: 1.396e0

QD
type: SiteQuality
SIO_000300: 1.384e1

DP
type: SiteQuality
SIO_000300: 1.909577e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

MQ
type: SiteQuality
SIO_000300: 5.965e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.899999999999999e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65294
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16238
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10118
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.167133520074697e-4
allele num: 8568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.61e-1

FS
type: SiteQuality
SIO_000300: 3.375e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.39e0

QD
type: SiteQuality
SIO_000300: 1.477e1

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.890483e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 9.930486593843098e-5
allele num: 10070
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65072
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.063e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

VQSLOD
type: SiteQuality
SIO_000300: -2.192e0

FS
type: SiteQuality
SIO_000300: 9.944000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

DP
type: SiteQuality
SIO_000300: 1.872326e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.540974512281567e-5
allele num: 64894
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.936406995230525e-5
allele num: 10064
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11294
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.98e-1

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 3.955e1

MQRankSum
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ReadPosRankSum
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FS
type: SiteQuality
SIO_000300: 2.2361e1

DP
type: SiteQuality
SIO_000300: 1.853272e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5500031000062e-5
allele num: 64516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.988014382740711e-5
allele num: 10012
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16108
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.189e0

MQ
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.75e0

DP
type: SiteQuality
SIO_000300: 1.831352e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 15
allele frequency: 9.315612967333251e-4
allele num: 16102
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64442
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.48e0

VQSLOD
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 7.64e-1

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 9.7e-3

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.556517137253681e-5
allele num: 64246
num of homozygotes: 0

Latino
type: Population
allele count: 0
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African
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allele count: 0
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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VQSLOD
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ClippingRankSum
type: SiteQuality
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FS
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DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 7.46e0

GenotypeQuality
all individuals: 1814
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4114
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4021
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2636
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2378
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5143
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1431
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2917
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 688
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1442
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15315
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9716
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11156
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.559965056782728e-5
allele num: 64104
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16042
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9980
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.133e0

DP
type: SiteQuality
SIO_000300: 1.800614e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.9e-3

QD
type: SiteQuality
SIO_000300: 1.145e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 536
bin: 5.75e1
variant carriers: 154

GenotypeQuality
all individuals: 2428
bin: 6.75e1
variant carriers: 294

GenotypeQuality
all individuals: 707
bin: 5.25e1
variant carriers: 200

GenotypeQuality
all individuals: 2647
bin: 3.75e1
variant carriers: 98

GenotypeQuality
all individuals: 196
bin: 7.5e0
variant carriers: 19

GenotypeQuality
all individuals: 249
bin: 2.5e0
variant carriers: 14

GenotypeQuality
all individuals: 948
bin: 4.75e1
variant carriers: 167

GenotypeQuality
all individuals: 710
bin: 9.25e1
variant carriers: 244

GenotypeQuality
all individuals: 10461
bin: 6.25e1
variant carriers: 263

GenotypeQuality
all individuals: 849
bin: 8.25e1
variant carriers: 265

GenotypeQuality
all individuals: 1023
bin: 7.75e1
variant carriers: 283

GenotypeQuality
all individuals: 27070
bin: 9.75e1
variant carriers: 22018

GenotypeQuality
all individuals: 467
bin: 8.75e1
variant carriers: 157

Other
type: Population
allele count: 175
allele frequency: 1.953125e-1
allele num: 896
num of homozygotes: 23

Latino
type: Population
allele count: 3519
allele frequency: 3.190389845874887e-1
allele num: 11030
num of homozygotes: 542

European (Finnish)
type: Population
allele count: 1548
allele frequency: 2.379342145711651e-1
allele num: 6506
num of homozygotes: 176

East Asian
type: Population
allele count: 4099
allele frequency: 4.901937335565654e-1
allele num: 8362
num of homozygotes: 978

European (Non-Finnish)
type: Population
allele count: 13608
allele frequency: 2.130444312239722e-1
allele num: 63874
num of homozygotes: 1314

African
type: Population
allele count: 1697
allele frequency: 1.70244783306581e-1
allele num: 9968
num of homozygotes: 149

South Asian
type: Population
allele count: 3418
allele frequency: 2.125357542594205e-1
allele num: 16082
num of homozygotes: 398

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e-1

QD
type: SiteQuality
SIO_000300: 1.832e1

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.62e-1

DP
type: SiteQuality
SIO_000300: 1.865562e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.86e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.61e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.97e0

GenotypeQuality
all individuals: 8071
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16463
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1309
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1107
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3612
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3622
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1029
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1481
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10850
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8128
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.29643621710112e-5
allele num: 15882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62860
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.0e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.49e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.579e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.45e0

QD
type: SiteQuality
SIO_000300: 1.361e1

FS
type: SiteQuality
SIO_000300: 1.2147e1

DP
type: SiteQuality
SIO_000300: 1.582056e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.77e0

GenotypeQuality
all individuals: 812
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2370
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1043
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2879
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7002
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2238
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12302
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1013
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1003
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1264
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9754
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.744383424862706e-4
allele num: 8012
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10680
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61992
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.355662895640016e-5
allele num: 15734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.85e0

QD
type: SiteQuality
SIO_000300: 1.525e1

MQ
type: SiteQuality
SIO_000300: 5.944e1

FS
type: SiteQuality
SIO_000300: 1.347e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

MQRankSum
type: SiteQuality
SIO_000300: 1.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.78e-1

DP
type: SiteQuality
SIO_000300: 1.531203e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

GenotypeQuality
all individuals: 507
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6984
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8069
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8211
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2236
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 933
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2363
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2833
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1254
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61834
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15724
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.386146048432514e-5
allele num: 10654
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8010
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.2e0

QD
type: SiteQuality
SIO_000300: 1.475e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.11e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.528329e6

VQSLOD
type: SiteQuality
SIO_000300: 4.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.065e0

GenotypeQuality
all individuals: 539
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2835
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11398
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1234
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1003
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6487
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8068
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 811
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7177
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2570
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15670
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7990
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.623587478893363e-5
allele num: 61592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9722
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.141e0

VQSLOD
type: SiteQuality
SIO_000300: -1.251e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.13e0

QD
type: SiteQuality
SIO_000300: 1.446e1

DP
type: SiteQuality
SIO_000300: 1.507248e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.44e-1

GenotypeQuality
all individuals: 1217
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2910
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1388
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 959
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2419
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8066
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4072
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6911
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1007
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9668
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7912
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.63377336295909e-5
allele num: 61208
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6410
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.254e1

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.1e-2

FS
type: SiteQuality
SIO_000300: 3.686e0

MQ
type: SiteQuality
SIO_000300: 5.915e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.52e0

DP
type: SiteQuality
SIO_000300: 1.48452e6

GenotypeQuality
all individuals: 503
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3702
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 936
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2925
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 997
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7298
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1323
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6875
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9234
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9644
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.538344143456696e-5
allele num: 10484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.420958006934635e-5
allele num: 15574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.642143983184446e-5
allele num: 60896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7894
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.91e-1

FS
type: SiteQuality
SIO_000300: 1.128e0

QD
type: SiteQuality
SIO_000300: 1.809e1

MQ
type: SiteQuality
SIO_000300: 5.954e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

VQSLOD
type: SiteQuality
SIO_000300: -7.94e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.8e-1

DP
type: SiteQuality
SIO_000300: 1.483903e6

GenotypeQuality
all individuals: 501
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2335
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4056
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2992
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8067
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 912
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7329
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 992
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1477
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1186
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4019
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 8
allele frequency: 8.321198252548367e-4
allele num: 9614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7830
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6380
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.6448e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.6e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

QD
type: SiteQuality
SIO_000300: 1.314e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.71e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.463e0

DP
type: SiteQuality
SIO_000300: 1.478451e6

GenotypeQuality
all individuals: 809
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4080
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1063
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3114
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7398
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8057
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1175
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7416
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4516
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 990
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9572
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.280081925243216e-4
allele num: 7812
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60504
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.470824e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.799e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

QD
type: SiteQuality
SIO_000300: 1.183e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.13e-1

GenotypeQuality
all individuals: 90
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17407
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33468
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 714
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1064
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1119
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4268
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.994664748373947e-5
allele num: 66726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.937e1

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

FS
type: SiteQuality
SIO_000300: 7.11e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.08e-1

DP
type: SiteQuality
SIO_000300: 3.058907e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

QD
type: SiteQuality
SIO_000300: 1.329e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.54e-1

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1061
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4265
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 1123
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17463
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33499
bin: 9.75e1
variant carriers: 39

GenotypeQuality
all individuals: 713
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 18
allele frequency: 2.697599136768276e-4
allele num: 66726
num of homozygotes: 0

Latino
type: Population
allele count: 15
allele frequency: 1.296008294453084e-3
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.849855630413859e-4
allele num: 10390
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.796e1

DP
type: SiteQuality
SIO_000300: 3.059223e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.06e0

MQRankSum
type: SiteQuality
SIO_000300: 6.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.39e-1

MQ
type: SiteQuality
SIO_000300: 6.03e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4262
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1076
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 1256
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variant carriers: 0

GenotypeQuality
all individuals: 711
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variant carriers: 0

GenotypeQuality
all individuals: 1063
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17500
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variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33476
bin: 9.75e1
variant carriers: 208

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 196
allele frequency: 1.887882874205355e-2
allele num: 10382
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.496926260233305e-5
allele num: 66694
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 6.93000693000693e-4
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.057935e6

MQ
type: SiteQuality
SIO_000300: 5.976e1

VQSLOD
type: SiteQuality
SIO_000300: 4.42e0

QD
type: SiteQuality
SIO_000300: 1.371e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.11e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.058e0

FS
type: SiteQuality
SIO_000300: 7.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.08e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.41e-1

GenotypeQuality
all individuals: 18
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4262
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33476
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1256
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variant carriers: 0

GenotypeQuality
all individuals: 711
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.049569676432663e-4
allele num: 66694
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.11e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.08e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

MQRankSum
type: SiteQuality
SIO_000300: 3.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.058e0

DP
type: SiteQuality
SIO_000300: 3.057935e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.07e-1

QD
type: SiteQuality
SIO_000300: 1.371e1

GenotypeQuality
all individuals: 19
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 45
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variant carriers: 0

GenotypeQuality
all individuals: 4288
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 711
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1126
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.632055480639569e-5
allele num: 10382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499250374812594e-5
allele num: 66700
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.54e0

DP
type: SiteQuality
SIO_000300: 3.051585e6

VQSLOD
type: SiteQuality
SIO_000300: 2.47e0

MQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.3e-2

FS
type: SiteQuality
SIO_000300: 1.748e0

QD
type: SiteQuality
SIO_000300: 1.332e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.3e-2

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17674
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1125
bin: 9.25e1
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GenotypeQuality
all individuals: 33327
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 42
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variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1068
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.399999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.77e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 1.7428e1

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.46e-1

QD
type: SiteQuality
SIO_000300: 1.284e1

DP
type: SiteQuality
SIO_000300: 3.053161e6

VQSLOD
type: SiteQuality
SIO_000300: -2.47e0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 33402
bin: 9.75e1
variant carriers: 552

GenotypeQuality
all individuals: 1059
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1245
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4285
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1070
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1116
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 29
allele frequency: 2.50561603594263e-3
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.202643171806168e-3
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 523
allele frequency: 5.032717474980754e-2
allele num: 10392
num of homozygotes: 13

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.498621268433042e-4
allele num: 66728
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.25e0

DP
type: SiteQuality
SIO_000300: 3.060503e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.662e0

FS
type: SiteQuality
SIO_000300: 2.456e0

QD
type: SiteQuality
SIO_000300: 1.292e1

MQRankSum
type: SiteQuality
SIO_000300: 2.4e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.35e-2

GenotypeQuality
all individuals: 1072
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1271
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 4366
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 713
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32996
bin: 9.75e1
variant carriers: 5

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
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FS
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MQ
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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DP
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VQSLOD
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.049003446725611e-4
allele num: 66730
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African
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Latino
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South Asian
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Other
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FS
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MQ
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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DP
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InbreedingCoeff
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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European (Non-Finnish)
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South Asian
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East Asian
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Other
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Latino
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ReadPosRankSum
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FS
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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QD
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ClippingRankSum
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MQRankSum
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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num of homozygotes: 0

East Asian
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Latino
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allele num: 11574
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Other
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South Asian
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African
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European (Finnish)
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QD
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MQRankSum
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VQSLOD
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BaseQRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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DP
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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African
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South Asian
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Other
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InbreedingCoeff
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ReadPosRankSum
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FS
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QD
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ClippingRankSum
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VQSLOD
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MQRankSum
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MQ
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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African
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South Asian
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European (Finnish)
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Latino
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Other
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MQRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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FS
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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European (Non-Finnish)
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Other
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Latino
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African
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South Asian
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MQRankSum
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ClippingRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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DP
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FS
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ReadPosRankSum
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MQ
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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South Asian
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East Asian
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African
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European (Non-Finnish)
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ReadPosRankSum
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DP
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FS
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ClippingRankSum
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MQRankSum
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QD
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InbreedingCoeff
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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South Asian
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African
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Other
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Latino
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European (Non-Finnish)
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MQ
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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FS
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MQRankSum
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BaseQRankSum
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DP
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QD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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African
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996973057212216e-5
allele num: 66734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.22e-1

DP
type: SiteQuality
SIO_000300: 3.041742e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.33e0

VQSLOD
type: SiteQuality
SIO_000300: 2.5e0

QD
type: SiteQuality
SIO_000300: 1.205e1

MQ
type: SiteQuality
SIO_000300: 5.968e1

MQRankSum
type: SiteQuality
SIO_000300: 2.06e-1

FS
type: SiteQuality
SIO_000300: 2.818e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32987
bin: 9.75e1
variant carriers: 28

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

East Asian
type: Population
allele count: 28
allele frequency: 3.235498035590478e-3
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.33e0

MQRankSum
type: SiteQuality
SIO_000300: 2.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.22e-1

DP
type: SiteQuality
SIO_000300: 3.041742e6

FS
type: SiteQuality
SIO_000300: 2.818e0

VQSLOD
type: SiteQuality
SIO_000300: 2.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.205e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.375e0

FS
type: SiteQuality
SIO_000300: 2.715e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.120000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.044e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.69e0

DP
type: SiteQuality
SIO_000300: 3.040007e6

QD
type: SiteQuality
SIO_000300: 1.309e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 32959
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 2
allele frequency: 1.923076923076923e-4
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.85e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.84e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.56e-1

DP
type: SiteQuality
SIO_000300: 3.039721e6

MQ
type: SiteQuality
SIO_000300: 6.076e1

MQRankSum
type: SiteQuality
SIO_000300: 1.56e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.4917e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.36e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1077
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GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.269e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

VQSLOD
type: SiteQuality
SIO_000300: -1.558e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.039603e6

MQRankSum
type: SiteQuality
SIO_000300: -1.735e0

QD
type: SiteQuality
SIO_000300: 1.075e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
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ReadPosRankSum
type: SiteQuality
SIO_000300: -7.36e-1

DP
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 0.0e0

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.923e1