http://identifiers.org/exac.variant/2-135740863-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135740863
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135740863
    reference: chr 2
allele count: 4913
allele frequency: 4.270985464914111e-2
allele num: 115032
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+383G>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+383G>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-309G>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+383G>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+415G>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+383G>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-1775G>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3312G>T
  hgvsp: ENSP00000376647.1:p.Gln1104His
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000176601
  ensembl transcript: ENST00000478805
  gene symbol: MAP3K19
  hgvsc: ENST00000478805.1:n.187G>T
  variant of: http://identifiers.org/hgnc/26249
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 4.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 8.25e1
  variant carriers: 256
genotype depth: GenotypeDepth
  all individuals: 10202
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4976
  bin: 3.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 10002
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16812
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 4.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 5.25e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 5.75e1
  variant carriers: 129
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2791
  bin: 9.75e1
  variant carriers: 2258
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 6.75e1
  variant carriers: 172
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 6.25e1
  variant carriers: 187
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 8.75e1
  variant carriers: 280
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.75e1
  variant carriers: 260
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 9.25e1
  variant carriers: 270
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 7.25e1
  variant carriers: 217
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1729
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 2
hgvs: p.Gln1104His
num of homozygotes: 636
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

2-135740864-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135740864
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135740864
    reference: chr 2
allele count: 1
allele frequency: 8.692930908585139e-6
allele num: 115036
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000176601
  ensembl transcript: ENST00000478805
  gene symbol: MAP3K19
  hgvsc: ENST00000478805.1:n.186A>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3311A>T
  hgvsp: ENSP00000376647.1:p.Gln1104Leu
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+382A>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+382A>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+414A>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+382A>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+382A>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-310A>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-1776A>T
  variant of: http://identifiers.org/hgnc/26249
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10406
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11051
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18550
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln1104Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD

2-135740868-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135740868
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135740868
    reference: chr 2
allele count: 9
allele frequency: 7.824726134585289e-5
allele num: 115020
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+410C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+378C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-314C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3307C>T
  hgvsp: ENSP00000376647.1:p.Gln1103Ter
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+378C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000176601
  ensembl transcript: ENST00000478805
  gene symbol: MAP3K19
  hgvsc: ENST00000478805.1:n.182C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+378C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+378C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-1780C>T
  variant of: http://identifiers.org/hgnc/26249
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11047
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5145
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1779
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25633
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gln1103Ter
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS

2-135740876-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135740876
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135740876
    reference: chr 2
allele count: 27420
allele frequency: 2.385675506368762e-1
allele num: 114936
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+402T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+370T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+370T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-1788T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-322T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3299T>C
  hgvsp: ENSP00000376647.1:p.Ile1100Thr
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+370T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000176601
  ensembl transcript: ENST00000478805
  gene symbol: MAP3K19
  hgvsc: ENST00000478805.1:n.174T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+370T>C
  variant of: http://identifiers.org/hgnc/26249
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 8.75e1
  variant carriers: 1570
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 5.25e1
  variant carriers: 1369
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 2.5e0
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 7.75e1
  variant carriers: 1915
genotype depth: GenotypeDepth
  all individuals: 7314
  bin: 3.25e1
  variant carriers: 199
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 6.75e1
  variant carriers: 1876
genotype depth: GenotypeDepth
  all individuals: 7030
  bin: 2.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 7.25e1
  variant carriers: 1896
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.25e1
  variant carriers: 684
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 6.25e1
  variant carriers: 1752
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 15689
  bin: 2.75e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 5999
  bin: 9.75e1
  variant carriers: 5873
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 5.75e1
  variant carriers: 1595
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 8.25e1
  variant carriers: 1745
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 3.75e1
  variant carriers: 409
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 4.75e1
  variant carriers: 1033
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 9.25e1
  variant carriers: 1405
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 4933
  bin: 6.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1392
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 8.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 6
hgvs: p.Ile1100Thr
num of homozygotes: 3906
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

2-135740883-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135740883
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135740883
    reference: chr 2
allele count: 1
allele frequency: 8.710042679209128e-6
allele num: 114810
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-1795A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+363A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+363A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3292A>G
  hgvsp: ENSP00000376647.1:p.Arg1098Gly
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+395A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-329A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000176601
  ensembl transcript: ENST00000478805
  gene symbol: MAP3K19
  hgvsc: ENST00000478805.1:n.167A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+363A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+363A>G
  variant of: http://identifiers.org/hgnc/26249
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12853
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2754
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1674
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg1098Gly
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD

2-135740887-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135740887
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135740887
    reference: chr 2
allele count: 1
allele frequency: 8.716571946584848e-6
allele num: 114724
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+359G>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-1799G>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3288G>A
  hgvsp: ENSP00000376647.1:p.Trp1096Ter
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+359G>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+359G>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000176601
  ensembl transcript: ENST00000478805
  gene symbol: MAP3K19
  hgvsc: ENST00000478805.1:n.163G>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-333G>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+359G>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+391G>A
  variant of: http://identifiers.org/hgnc/26249
canonical: false
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2749
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1669
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Trp1096Ter
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

2-135740890-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135740890
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135740890
    reference: chr 2
allele count: 2
allele frequency: 1.744500462292622e-5
allele num: 114646
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3285A>G
  hgvsp: ENST00000392915.1:c.3285A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+356A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+356A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+388A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-336A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+356A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-1802A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000176601
  ensembl transcript: ENST00000478805
  gene symbol: MAP3K19
  hgvsc: ENST00000478805.1:n.160A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+356A>G
  variant of: http://identifiers.org/hgnc/26249
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3511
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2739
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8390
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1668
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln1095Gln
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

2-135740901-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135740901
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135740901
    reference: chr 2
allele count: 2
allele frequency: 1.75297128633033e-5
allele num: 114092
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-347G>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+345G>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3274G>C
  hgvsp: ENSP00000376647.1:p.Val1092Leu
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000176601
  ensembl transcript: ENST00000478805
  gene symbol: MAP3K19
  hgvsc: ENST00000478805.1:n.149G>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+377G>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+345G>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+345G>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-1813G>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+345G>C
  variant of: http://identifiers.org/hgnc/26249
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26737
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12446
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9790
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1640
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2706
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2346
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val1092Leu
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum

2-135740902-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135740902
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135740902
    reference: chr 2
allele count: 4
allele frequency: 3.509202884564771e-5
allele num: 113986
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+344G>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-1814G>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+344G>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-347-1G>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+376G>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+344G>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+344G>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3274-1G>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000176601
  ensembl transcript: ENST00000478805
  gene symbol: MAP3K19
  hgvsc: ENST00000478805.1:n.148G>A
  variant of: http://identifiers.org/hgnc/26249
canonical: false
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9763
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26609
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35646
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1634
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
hgvs: c.-347-1G>A
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

2-135740911-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135740911
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135740911
    reference: chr 2
allele count: 1
allele frequency: 8.832049742104147e-6
allele num: 113224
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+335A>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-347-10A>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3274-10A>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000176601
  ensembl transcript: ENST00000478805
  gene symbol: MAP3K19
  hgvsc: ENST00000478805.1:n.139A>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+335A>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+335A>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+367A>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+335A>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-1823A>T
  variant of: http://identifiers.org/hgnc/26249
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9423
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11701
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2229
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

2-135740911-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135740911
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135740911
    reference: chr 2
allele count: 1
allele frequency: 8.832049742104147e-6
allele num: 113224
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000176601
  ensembl transcript: ENST00000478805
  gene symbol: MAP3K19
  hgvsc: ENST00000478805.1:n.139A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3274-10A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+335A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+367A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-347-10A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+335A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-1823A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+335A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+335A>G
  variant of: http://identifiers.org/hgnc/26249
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11701
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9423
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7700
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/2-135740935-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135740935
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135740935
    reference: chr 2
allele count: 3
allele frequency: 2.714440825190011e-5
allele num: 110520
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+343T>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+311T>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000176601
  ensembl transcript: ENST00000478805
  gene symbol: MAP3K19
  hgvsc: ENST00000478805.1:n.115T>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3274-34T>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-1847T>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+311T>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-347-34T>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+311T>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+311T>G
  variant of: http://identifiers.org/hgnc/26249
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7081
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9404
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7677
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16419
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8935
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19726
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2823
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2137
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

2-135740935-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135740935
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135740935
    reference: chr 2
allele count: 1
allele frequency: 9.048136083966702e-6
allele num: 110520
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-1847T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000176601
  ensembl transcript: ENST00000478805
  gene symbol: MAP3K19
  hgvsc: ENST00000478805.1:n.115T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+311T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+311T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3274-34T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+311T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+343T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+311T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-347-34T>C
  variant of: http://identifiers.org/hgnc/26249
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7081
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8935
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9404
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7677
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1346
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1734
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1410
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

2-135740936-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135740936
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135740936
    reference: chr 2
allele count: 1
allele frequency: 9.074080795615405e-6
allele num: 110204
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000176601
  ensembl transcript: ENST00000478805
  gene symbol: MAP3K19
  hgvsc: ENST00000478805.1:n.114A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-347-35A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+310A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+310A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+342A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+310A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-1848A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+310A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3274-35A>G
  variant of: http://identifiers.org/hgnc/26249
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15874
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8945
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10232
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6931
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7491
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4248
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4825
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1562
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

2-135740941-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135740941
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135740941
    reference: chr 2
allele count: 1
allele frequency: 9.167247258993069e-6
allele num: 109084
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+305A>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+305A>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-347-40A>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+337A>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+305A>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-1853A>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+305A>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000176601
  ensembl transcript: ENST00000478805
  gene symbol: MAP3K19
  hgvsc: ENST00000478805.1:n.109A>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3274-40A>T
  variant of: http://identifiers.org/hgnc/26249
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8784
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13479
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8741
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11919
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6169
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3416
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5750
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3728
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1340
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4427
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD

2-135740945-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135740945
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135740945
    reference: chr 2
allele count: 1
allele frequency: 9.281948466622114e-6
allele num: 107736
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3274-44A>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+301A>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000176601
  ensembl transcript: ENST00000478805
  gene symbol: MAP3K19
  hgvsc: ENST00000478805.1:n.105A>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+301A>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-347-44A>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+301A>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+333A>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+301A>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-1857A>C
  variant of: http://identifiers.org/hgnc/26249
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13305
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11483
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5320
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8633
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2252
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9986
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2661
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5302
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1439
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5237
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1467
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9855
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ

2-135740948-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135740948
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135740948
    reference: chr 2
allele count: 1
allele frequency: 9.304229702822904e-6
allele num: 107478
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000176601
  ensembl transcript: ENST00000478805
  gene symbol: MAP3K19
  hgvsc: ENST00000478805.1:n.102T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+298T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+298T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+298T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+298T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-347-47T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3274-47T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+330T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-1860T>C
  variant of: http://identifiers.org/hgnc/26249
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9285
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8621
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4987
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12491
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1947
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4029
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6133
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3707
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

2-135740949-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135740949
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135740949
    reference: chr 2
allele count: 66
allele frequency: 6.147884568809733e-4
allele num: 107354
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+297A>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-347-48A>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+297A>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3274-48A>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+297A>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-1861A>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+329A>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+297A>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000176601
  ensembl transcript: ENST00000478805
  gene symbol: MAP3K19
  hgvsc: ENST00000478805.1:n.101A>T
  variant of: http://identifiers.org/hgnc/26249
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8606
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13176
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9097
  bin: 2.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4872
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12784
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3181
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1467
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3074
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5719
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4566
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

2-135740949-T-TATA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135740949
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135740952
    reference: chr 2
allele count: 1
allele frequency: 9.314976619408685e-6
allele num: 107354
alternate allele: TATA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+296_1392+297insTAT
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+296_3222+297insTAT
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3274-49_3274-48insTAT
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-1862_619-1861insTAT
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+296_2883+297insTAT
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+296_768+297insTAT
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000176601
  ensembl transcript: ENST00000478805
  gene symbol: MAP3K19
  hgvsc: ENST00000478805.1:n.100_101insTAT
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+328_736+329insTAT
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-347-49_-347-48insTAT
  variant of: http://identifiers.org/hgnc/26249
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4872
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9097
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8606
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12784
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3676
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1432
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4883
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5851
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

2-135740950-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135740950
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135740950
    reference: chr 2
allele count: 1
allele frequency: 9.3562874251497e-6
allele num: 106880
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+296C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+296C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-347-49C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+296C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+328C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000176601
  ensembl transcript: ENST00000478805
  gene symbol: MAP3K19
  hgvsc: ENST00000478805.1:n.100C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-1862C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+296C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3274-49C>T
  variant of: http://identifiers.org/hgnc/26249
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8605
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4797
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12926
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9022
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4697
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5721
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1434
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1322
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1458
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1325
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

2-135741200-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741200
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741200
    reference: chr 2
allele count: 1
allele frequency: 9.3711929528629e-6
allele num: 106710
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-348+46C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+46C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+46C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3273+46C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+46C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2112C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+78C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+46C>A
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6439
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7246
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6040
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8134
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3374
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4744
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4281
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7374
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1047
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7475
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3808
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD

2-135741201-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741201
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741201
    reference: chr 2
allele count: 1
allele frequency: 9.825499135356077e-6
allele num: 101776
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+45A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2113A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-348+45A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+45A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+77A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+45A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3273+45A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+45A>G
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4200
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5821
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7447
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4968
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8072
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7137
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6378
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2871
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6426
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1333
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

2-135741201-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741201
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741202
    reference: chr 2
allele count: 84
allele frequency: 8.253419273699104e-4
allele num: 101776
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+76dupC
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+44dupC
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3273+44dupC
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-348+44dupC
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+44dupC
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2114dupC
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+44dupC
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+44dupC
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8072
  bin: 3.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 6378
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7447
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 7137
  bin: 2.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5821
  bin: 2.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4968
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4200
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6426
  bin: 6.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 1.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 3441
  bin: 7.5e0
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1110
  bin: 4.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1333
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1835
  bin: 2.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2871
  bin: 7.25e1
  variant carriers: 6
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP

2-135741201-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741201
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741200
    reference: chr 2
allele count: 1
allele frequency: 9.825499135356077e-6
allele num: 101776
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3273+44delC
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+44delC
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+76delC
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2114delC
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+44delC
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-348+44delC
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+44delC
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+44delC
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7447
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5821
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7137
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8072
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4200
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4968
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6426
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1122
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1110
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4134
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3441
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: TG
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

2-135741202-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741202
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741202
    reference: chr 2
allele count: 26
allele frequency: 2.444482051860627e-4
allele num: 106362
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+44C>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+76C>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3273+44C>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2114C>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+44C>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-348+44C>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+44C>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+44C>G
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7023
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5195
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7601
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6516
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6093
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8281
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3659
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3296
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7456
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19654
  bin: 9.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3276
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

2-135741203-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741203
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741203
    reference: chr 2
allele count: 1
allele frequency: 9.314803085062781e-6
allele num: 107356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+43C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3273+43C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+75C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-348+43C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+43C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2115C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+43C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+43C>T
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7028
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3671
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6561
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8375
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6222
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7771
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3295
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19899
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2754
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

2-135741203-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741203
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741203
    reference: chr 2
allele count: 5
allele frequency: 4.657401542531391e-5
allele num: 107356
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+43C>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+43C>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2115C>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+43C>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+43C>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-348+43C>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+75C>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3273+43C>G
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6561
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6222
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7028
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3671
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8375
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7771
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2754
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3295
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5154
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1618
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

2-135741203-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741203
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741203
    reference: chr 2
allele count: 5
allele frequency: 4.657401542531391e-5
allele num: 107356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-348+43C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3273+43C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+43C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+43C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2115C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+43C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+75C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+43C>A
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6222
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8375
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7028
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6561
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3671
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1618
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5154
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19899
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3344
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4217
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

2-135741204-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741204
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741204
    reference: chr 2
allele count: 2
allele frequency: 1.859081613682841e-5
allele num: 107580
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+42C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+42C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+42C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3273+42C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-348+42C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2116C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+74C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+42C>T
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7036
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3678
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7623
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6571
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19994
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3340
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3406
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

2-135741204-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741204
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741204
    reference: chr 2
allele count: 4
allele frequency: 3.718163227365681e-5
allele num: 107580
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-348+42C>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+74C>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2116C>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+42C>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+42C>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3273+42C>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+42C>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+42C>G
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7036
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8442
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3678
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7623
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6571
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3406
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8060
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4303
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

2-135741204-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741204
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741204
    reference: chr 2
allele count: 2
allele frequency: 1.859081613682841e-5
allele num: 107580
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+42C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+74C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+42C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+42C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3273+42C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-348+42C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+42C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2116C>A
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7036
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6571
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3678
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7623
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3697
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3340
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

2-135741205-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741205
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741205
    reference: chr 2
allele count: 2
allele frequency: 1.856596487319446e-5
allele num: 107724
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+41C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+41C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+41C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+41C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2117C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-348+41C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+73C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3273+41C>T
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8474
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7059
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4094
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3679
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7640
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6529
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5311
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3426
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3350
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

2-135741205-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741205
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741205
    reference: chr 2
allele count: 55
allele frequency: 5.105640340128477e-4
allele num: 107724
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+73C>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+41C>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+41C>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+41C>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3273+41C>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+41C>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2117C>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-348+41C>G
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8474
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4094
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3679
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6568
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6529
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7059
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 7640
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5227
  bin: 4.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3350
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1614
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4325
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS

2-135741205-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741205
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741205
    reference: chr 2
allele count: 2
allele frequency: 1.856596487319446e-5
allele num: 107724
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+41C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-348+41C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+73C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+41C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3273+41C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+41C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2117C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+41C>A
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6529
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3679
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4094
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7059
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7640
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8474
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3717
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8189
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

2-135741207-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741207
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741207
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 107958
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+39C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+39C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+71C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+39C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3273+39C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+39C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2119C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-348+39C>A
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4069
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3683
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7143
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6721
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7635
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3393
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3765
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2824
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5356
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

2-135741208-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741208
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741208
    reference: chr 2
allele count: 1
allele frequency: 9.253090532237768e-6
allele num: 108072
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+38C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+38C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-348+38C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+38C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+38C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2120C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+70C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3273+38C>T
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6827
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3688
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4052
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8554
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7177
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4380
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8575
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3387
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4179
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3786
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

2-135741208-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741208
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741208
    reference: chr 2
allele count: 1
allele frequency: 9.253090532237768e-6
allele num: 108072
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2120C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-348+38C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+38C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3273+38C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+38C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+38C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+38C>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+70C>A
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3688
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8554
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6827
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7177
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4052
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1662
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2833
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3387
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-135741209-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741209
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741209
    reference: chr 2
allele count: 7
allele frequency: 6.56672733071915e-5
allele num: 106598
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+37A>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+69A>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+37A>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+37A>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3273+37A>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+37A>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2121A>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-348+37A>C
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6265
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5323
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7153
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1909
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6639
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3750
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8480
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7721
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1510
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3203
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 967
  bin: 5.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ

2-135741211-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741211
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741211
    reference: chr 2
allele count: 1
allele frequency: 9.205390676780322e-6
allele num: 108632
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+35C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+67C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2123C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+35C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+35C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3273+35C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+35C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-348+35C>T
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6843
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8613
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5517
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7942
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3926
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7124
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3857
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3796
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4466
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1567
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5307
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

2-135741217-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741217
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741217
    reference: chr 2
allele count: 1
allele frequency: 9.156670634557275e-6
allele num: 109210
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+29C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+29C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3273+29C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+29C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-348+29C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2129C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+29C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+61C>T
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3690
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6877
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7221
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5524
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8723
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7984
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4534
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4347
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21193
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ

2-135741226-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741226
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741226
    reference: chr 2
allele count: 4
allele frequency: 3.644381275169008e-5
allele num: 109758
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+20T>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+52T>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+20T>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+20T>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2138T>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+20T>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3273+20T>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-348+20T>A
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8787
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6784
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6879
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7999
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7255
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5531
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2908
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3850
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4576
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2104
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

2-135741235-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741235
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741235
    reference: chr 2
allele count: 1
allele frequency: 9.075233687267447e-6
allele num: 110190
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+11C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3273+11C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+11C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-348+11C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2147C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+11C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+43C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+11C>T
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2551
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5536
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8807
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8004
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7273
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6879
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3858
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2492
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3664
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD

2-135741237-TTAAC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741237
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741233
    reference: chr 2
allele count: 1
allele frequency: 9.065525619175399e-6
allele num: 110308
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2883+5_2883+8delGTTA
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+37_736+40delGTTA
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1392+5_1392+8delGTTA
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3222+5_3222+8delGTTA
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-348+5_-348+8delGTTA
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2153_619-2150delGTTA
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3273+5_3273+8delGTTA
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.768+5_768+8delGTTA
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8807
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5535
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7278
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6980
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3007
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6880
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4373
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2276
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5452
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8764
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
hgvs: c.3222+5_3222+8delGTTA
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: TTAAC
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

2-135741251-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741251
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741251
    reference: chr 2
allele count: 5
allele frequency: 4.498344609183821e-5
allele num: 111152
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1387G>A
  hgvsp: ENSP00000392827.1:p.Gly463Ser
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3268G>A
  hgvsp: ENSP00000376647.1:p.Gly1090Ser
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2878G>A
  hgvsp: ENSP00000351140.4:p.Gly960Ser
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-353G>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+27G>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.763G>A
  hgvsp: ENSP00000365004.3:p.Gly255Ser
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3217G>A
  hgvsp: ENSP00000365005.3:p.Gly1073Ser
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2163G>A
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8006
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8826
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7170
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3701
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3350
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8954
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3862
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly1073Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

2-135741252-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741252
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741252
    reference: chr 2
allele count: 2
allele frequency: 1.796460971885386e-5
allele num: 111330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-354C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.762C>T
  hgvsp: ENST00000375844.3:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3216C>T
  hgvsp: ENST00000375845.3:c.3216C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2164C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3267C>T
  hgvsp: ENST00000392915.1:c.3267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1386C>T
  hgvsp: ENST00000437365.1:c.1386C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2877C>T
  hgvsp: ENST00000358371.4:c.2877C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+26C>T
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3794
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8829
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8006
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3863
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3529
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21238
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Tyr1072Tyr
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

2-135741259-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741259
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741259
    reference: chr 2
allele count: 4
allele frequency: 3.575578796817735e-5
allele num: 111870
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1379G>A
  hgvsp: ENSP00000392827.1:p.Gly460Glu
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+19G>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.755G>A
  hgvsp: ENSP00000365004.3:p.Gly252Glu
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3260G>A
  hgvsp: ENSP00000376647.1:p.Gly1087Glu
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-361G>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2171G>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3209G>A
  hgvsp: ENSP00000365005.3:p.Gly1070Glu
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2870G>A
  hgvsp: ENSP00000351140.4:p.Gly957Glu
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6885
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8826
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7331
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8005
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3926
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7311
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4380
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21241
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3715
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2987
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly1070Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

http://identifiers.org/exac.variant/2-135741268-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741268
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741268
    reference: chr 2
allele count: 26
allele frequency: 2.306559500363727e-4
allele num: 112722
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1370T>G
  hgvsp: ENSP00000392827.1:p.Leu457Arg
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-370T>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3251T>G
  hgvsp: ENSP00000376647.1:p.Leu1084Arg
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2861T>G
  hgvsp: ENSP00000351140.4:p.Leu954Arg
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.746T>G
  hgvsp: ENSP00000365004.3:p.Leu249Arg
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2180T>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3200T>G
  hgvsp: ENSP00000365005.3:p.Leu1067Arg
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.736+10T>G
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7351
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5536
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2460
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3844
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 7523
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6886
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8826
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8004
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3724
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5488
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4384
  bin: 8.25e1
  variant carriers: 1
hgvs: p.Leu1067Arg
num of homozygotes: 1
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

2-135741285-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741285
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741285
    reference: chr 2
allele count: 3
allele frequency: 2.617389938753075e-5
allele num: 114618
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2844G>C
  hgvsp: ENSP00000351140.4:p.Trp948Cys
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3234G>C
  hgvsp: ENSP00000376647.1:p.Trp1078Cys
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-387G>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1353G>C
  hgvsp: ENSP00000392827.1:p.Trp451Cys
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.729G>C
  hgvsp: ENSP00000365004.3:p.Trp243Cys
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.729G>C
  hgvsp: ENSP00000376650.3:p.Trp243Cys
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2197G>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3183G>C
  hgvsp: ENSP00000365005.3:p.Trp1061Cys
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8007
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8835
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21253
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9936
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Trp1061Cys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

2-135741289-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741289
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741289
    reference: chr 2
allele count: 8
allele frequency: 6.942274983512097e-5
allele num: 115236
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3179T>C
  hgvsp: ENSP00000365005.3:p.Leu1060Pro
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-391T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.725T>C
  hgvsp: ENSP00000365004.3:p.Leu242Pro
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2840T>C
  hgvsp: ENSP00000351140.4:p.Leu947Pro
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.725T>C
  hgvsp: ENSP00000376650.3:p.Leu242Pro
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2201T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1349T>C
  hgvsp: ENSP00000392827.1:p.Leu450Pro
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3230T>C
  hgvsp: ENSP00000376647.1:p.Leu1077Pro
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2460
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6887
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8513
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5540
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3668
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10239
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2987
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu1060Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: African
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

2-135741293-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741293
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741294
    reference: chr 2
allele count: 1
allele frequency: 8.633192900062159e-6
allele num: 115832
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3225dupT
  hgvsp: ENSP00000376647.1:p.Ile1076TyrfsTer7
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3174dupT
  hgvsp: ENSP00000365005.3:p.Ile1059TyrfsTer7
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.720dupT
  hgvsp: ENSP00000365004.3:p.Ile241TyrfsTer7
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.720dupT
  hgvsp: ENSP00000376650.3:p.Ile241TyrfsTer44
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1344dupT
  hgvsp: ENSP00000392827.1:p.Ile449TyrfsTer7
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2835dupT
  hgvsp: ENSP00000351140.4:p.Ile946TyrfsTer7
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-396dupT
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2206dupT
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8004
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8822
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8844
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7496
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2987
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2725
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile1059TyrfsTer7
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

2-135741295-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741295
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741295
    reference: chr 2
allele count: 1
allele frequency: 8.616084506556841e-6
allele num: 116062
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1343C>T
  hgvsp: ENSP00000392827.1:p.Pro448Leu
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2207C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3224C>T
  hgvsp: ENSP00000376647.1:p.Pro1075Leu
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-397C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.719C>T
  hgvsp: ENSP00000365004.3:p.Pro240Leu
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3173C>T
  hgvsp: ENSP00000365005.3:p.Pro1058Leu
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2834C>T
  hgvsp: ENSP00000351140.4:p.Pro945Leu
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.719C>T
  hgvsp: ENSP00000376650.3:p.Pro240Leu
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8951
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7523
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8842
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5542
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro1058Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

2-135741306-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741306
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741306
    reference: chr 2
allele count: 1
allele frequency: 8.524567804412315e-6
allele num: 117308
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-408G>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2823G>C
  hgvsp: ENSP00000351140.4:p.Lys941Asn
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.708G>C
  hgvsp: ENSP00000365004.3:p.Lys236Asn
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1332G>C
  hgvsp: ENSP00000392827.1:p.Lys444Asn
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3213G>C
  hgvsp: ENSP00000376647.1:p.Lys1071Asn
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3162G>C
  hgvsp: ENSP00000365005.3:p.Lys1054Asn
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2218G>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.708G>C
  hgvsp: ENSP00000376650.3:p.Lys236Asn
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9664
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7594
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8844
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8004
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4608
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2071
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Lys1054Asn
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/2-135741313-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741313
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741313
    reference: chr 2
allele count: 1
allele frequency: 8.493867427717188e-6
allele num: 117732
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1325G>T
  hgvsp: ENSP00000392827.1:p.Ser442Ile
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3155G>T
  hgvsp: ENSP00000365005.3:p.Ser1052Ile
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.701G>T
  hgvsp: ENSP00000365004.3:p.Ser234Ile
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-415G>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2816G>T
  hgvsp: ENSP00000351140.4:p.Ser939Ile
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2225G>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3206G>T
  hgvsp: ENSP00000376647.1:p.Ser1069Ile
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.701G>T
  hgvsp: ENSP00000376650.3:p.Ser234Ile
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8001
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7657
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9863
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5591
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1897
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4385
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser1052Ile
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff

2-135741314-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741314
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741314
    reference: chr 2
allele count: 1
allele frequency: 8.489540885628905e-6
allele num: 117792
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3205A>G
  hgvsp: ENSP00000376647.1:p.Ser1069Gly
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1324A>G
  hgvsp: ENSP00000392827.1:p.Ser442Gly
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-416A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.700A>G
  hgvsp: ENSP00000365004.3:p.Ser234Gly
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3154A>G
  hgvsp: ENSP00000365005.3:p.Ser1052Gly
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.700A>G
  hgvsp: ENSP00000376650.3:p.Ser234Gly
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2815A>G
  hgvsp: ENSP00000351140.4:p.Ser939Gly
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2226A>G
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8841
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9905
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8000
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7656
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21261
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5601
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4385
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser1052Gly
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

2-135741321-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741321
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741321
    reference: chr 2
allele count: 2
allele frequency: 1.694513166367303e-5
allele num: 118028
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.693T>C
  hgvsp: ENST00000375844.3:c.693T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2808T>C
  hgvsp: ENST00000358371.4:c.2808T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1317T>C
  hgvsp: ENST00000437365.1:c.1317T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.693T>C
  hgvsp: ENST00000392918.3:c.693T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3147T>C
  hgvsp: ENST00000375845.3:c.3147T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2233T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-423T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3198T>C
  hgvsp: ENST00000392915.1:c.3198T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8004
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7720
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5542
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9940
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3897
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2984
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11740
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser1049Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff

2-135741326-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741326
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741326
    reference: chr 2
allele count: 1
allele frequency: 8.459091831900928e-6
allele num: 118216
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3142T>C
  hgvsp: ENSP00000365005.3:p.Phe1048Leu
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1312T>C
  hgvsp: ENSP00000392827.1:p.Phe438Leu
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3193T>C
  hgvsp: ENSP00000376647.1:p.Phe1065Leu
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.688T>C
  hgvsp: ENSP00000365004.3:p.Phe230Leu
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-428T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2803T>C
  hgvsp: ENSP00000351140.4:p.Phe935Leu
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.688T>C
  hgvsp: ENSP00000376650.3:p.Phe230Leu
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2238T>C
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9996
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8002
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6890
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7729
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5542
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1719
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3670
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Phe1048Leu
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP

2-135741341-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741341
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741341
    reference: chr 2
allele count: 1
allele frequency: 8.453799983092399e-6
allele num: 118290
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2253A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3127A>G
  hgvsp: ENSP00000365005.3:p.Asn1043Asp
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-443A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1297A>G
  hgvsp: ENSP00000392827.1:p.Asn433Asp
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.673A>G
  hgvsp: ENSP00000365004.3:p.Asn225Asp
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2788A>G
  hgvsp: ENSP00000351140.4:p.Asn930Asp
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3178A>G
  hgvsp: ENSP00000376647.1:p.Asn1060Asp
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.673A>G
  hgvsp: ENSP00000376650.3:p.Asn225Asp
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8851
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6889
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9847
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7772
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8001
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3898
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asn1043Asp
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

2-135741345-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741345
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741345
    reference: chr 2
allele count: 1
allele frequency: 8.455372543714276e-6
allele num: 118268
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3174C>T
  hgvsp: ENST00000392915.1:c.3174C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1293C>T
  hgvsp: ENST00000437365.1:c.1293C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2257C>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.669C>T
  hgvsp: ENST00000392918.3:c.669C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.669C>T
  hgvsp: ENST00000375844.3:c.669C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2784C>T
  hgvsp: ENST00000358371.4:c.2784C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3123C>T
  hgvsp: ENST00000375845.3:c.3123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-447C>T
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7792
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5542
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6889
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9733
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8852
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2984
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4610
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5601
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ile1041Ile
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

2-135741353-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741353
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741353
    reference: chr 2
allele count: 1
allele frequency: 8.472996559963397e-6
allele num: 118022
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3166T>C
  hgvsp: ENSP00000376647.1:p.Phe1056Leu
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2265T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-455T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1285T>C
  hgvsp: ENSP00000392827.1:p.Phe429Leu
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.661T>C
  hgvsp: ENSP00000376650.3:p.Phe221Leu
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.661T>C
  hgvsp: ENSP00000365004.3:p.Phe221Leu
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3115T>C
  hgvsp: ENSP00000365005.3:p.Phe1039Leu
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2776T>C
  hgvsp: ENSP00000351140.4:p.Phe926Leu
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8002
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5542
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9356
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7800
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6890
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4387
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2073
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4609
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21264
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Phe1039Leu
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

2-135741354-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741354
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741354
    reference: chr 2
allele count: 1
allele frequency: 8.47687508476875e-6
allele num: 117968
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-456A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3114A>G
  hgvsp: ENST00000375845.3:c.3114A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3165A>G
  hgvsp: ENST00000392915.1:c.3165A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.660A>G
  hgvsp: ENST00000375844.3:c.660A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2775A>G
  hgvsp: ENST00000358371.4:c.2775A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1284A>G
  hgvsp: ENST00000437365.1:c.1284A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.660A>G
  hgvsp: ENST00000392918.3:c.660A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2266A>G
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8862
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5540
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8002
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6890
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7794
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3903
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys1038Lys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/2-135741363-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741363
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741363
    reference: chr 2
allele count: 1
allele frequency: 8.506584096090374e-6
allele num: 117556
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2275G>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2766G>T
  hgvsp: ENSP00000351140.4:p.Arg922Ser
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.651G>T
  hgvsp: ENSP00000365004.3:p.Arg217Ser
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1275G>T
  hgvsp: ENSP00000392827.1:p.Arg425Ser
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.651G>T
  hgvsp: ENSP00000376650.3:p.Arg217Ser
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3156G>T
  hgvsp: ENSP00000376647.1:p.Arg1052Ser
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3105G>T
  hgvsp: ENSP00000365005.3:p.Arg1035Ser
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-465G>T
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8762
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8002
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5540
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8862
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7774
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6891
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2451
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3668
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4613
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4386
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg1035Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum

2-135741364-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741364
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741364
    reference: chr 2
allele count: 1
allele frequency: 8.511362669163334e-6
allele num: 117490
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.650G>A
  hgvsp: ENSP00000365004.3:p.Arg217Lys
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-466G>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1274G>A
  hgvsp: ENSP00000392827.1:p.Arg425Lys
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2276G>A
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2765G>A
  hgvsp: ENSP00000351140.4:p.Arg922Lys
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.650G>A
  hgvsp: ENSP00000376650.3:p.Arg217Lys
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3155G>A
  hgvsp: ENSP00000376647.1:p.Arg1052Lys
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3104G>A
  hgvsp: ENSP00000365005.3:p.Arg1035Lys
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5540
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6891
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7754
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8865
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21266
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg1035Lys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

2-135741367-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741367
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741367
    reference: chr 2
allele count: 33
allele frequency: 2.813683025817673e-4
allele num: 117284
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.647A>G
  hgvsp: ENSP00000365004.3:p.Asp216Gly
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2762A>G
  hgvsp: ENSP00000351140.4:p.Asp921Gly
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2279A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3152A>G
  hgvsp: ENSP00000376647.1:p.Asp1051Gly
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-469A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3101A>G
  hgvsp: ENSP00000365005.3:p.Asp1034Gly
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1271A>G
  hgvsp: ENSP00000392827.1:p.Asp424Gly
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.647A>G
  hgvsp: ENSP00000376650.3:p.Asp216Gly
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5535
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8470
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7706
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6887
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8853
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7998
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 2689
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21281
  bin: 9.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp1034Gly
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

2-135741369-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741369
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741369
    reference: chr 2
allele count: 1
allele frequency: 8.535336292249914e-6
allele num: 117160
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1269T>C
  hgvsp: ENST00000437365.1:c.1269T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2760T>C
  hgvsp: ENST00000358371.4:c.2760T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.645T>C
  hgvsp: ENST00000375844.3:c.645T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2281T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3099T>C
  hgvsp: ENST00000375845.3:c.3099T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.645T>C
  hgvsp: ENST00000392918.3:c.645T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3150T>C
  hgvsp: ENST00000392915.1:c.3150T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-471T>C
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8353
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7998
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7681
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5548
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2790
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Tyr1033Tyr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

2-135741370-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741370
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741370
    reference: chr 2
allele count: 1
allele frequency: 8.535773426430169e-6
allele num: 117154
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-472A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2759A>G
  hgvsp: ENSP00000351140.4:p.Tyr920Cys
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1268A>G
  hgvsp: ENSP00000392827.1:p.Tyr423Cys
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.644A>G
  hgvsp: ENSP00000365004.3:p.Tyr215Cys
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2282A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3098A>G
  hgvsp: ENSP00000365005.3:p.Tyr1033Cys
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.644A>G
  hgvsp: ENSP00000376650.3:p.Tyr215Cys
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3149A>G
  hgvsp: ENSP00000376647.1:p.Tyr1050Cys
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7675
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8354
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7999
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3668
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10240
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Tyr1033Cys
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

2-135741387-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741387
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741387
    reference: chr 2
allele count: 1
allele frequency: 8.601558602418759e-6
allele num: 116258
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1251T>C
  hgvsp: ENST00000437365.1:c.1251T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3081T>C
  hgvsp: ENST00000375845.3:c.3081T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.627T>C
  hgvsp: ENST00000375844.3:c.627T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2742T>C
  hgvsp: ENST00000358371.4:c.2742T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2299T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3132T>C
  hgvsp: ENST00000392915.1:c.3132T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-489T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.627T>C
  hgvsp: ENST00000392918.3:c.627T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8844
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6889
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3870
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2465
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7999
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4381
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5517
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser1027Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum

http://identifiers.org/exac.variant/2-135741388-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741388
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741388
    reference: chr 2
allele count: 2
allele frequency: 1.721822376803609e-5
allele num: 116156
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2741G>T
  hgvsp: ENSP00000351140.4:p.Ser914Ile
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-490G>T
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1250G>T
  hgvsp: ENSP00000392827.1:p.Ser417Ile
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3080G>T
  hgvsp: ENSP00000365005.3:p.Ser1027Ile
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.626G>T
  hgvsp: ENSP00000365004.3:p.Ser209Ile
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3131G>T
  hgvsp: ENSP00000376647.1:p.Ser1044Ile
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.626G>T
  hgvsp: ENSP00000376650.3:p.Ser209Ile
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2300G>T
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8845
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3871
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5540
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7569
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7999
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2465
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5514
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3892
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4382
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2986
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser1027Ile
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

2-135741390-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741390
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741390
    reference: chr 2
allele count: 1
allele frequency: 8.615342201392239e-6
allele num: 116072
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2302T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.624T>C
  hgvsp: ENST00000375844.3:c.624T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.624T>C
  hgvsp: ENST00000392918.3:c.624T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3078T>C
  hgvsp: ENST00000375845.3:c.3078T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2739T>C
  hgvsp: ENST00000358371.4:c.2739T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1248T>C
  hgvsp: ENST00000437365.1:c.1248T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-492T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3129T>C
  hgvsp: ENST00000392915.1:c.3129T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8001
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2465
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7457
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8837
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5541
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3669
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4383
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4607
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
hgvs: p.His1026His
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP

2-135741405-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741405
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741405
    reference: chr 2
allele count: 1
allele frequency: 8.670921198668147e-6
allele num: 115328
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.619-10A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1243-10A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2734-10A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3073-10A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.619-10A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-497-10A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2317A>G
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3124-10A>G
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7381
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6887
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7054
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8833
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8000
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5540
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3596
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4385
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD

2-135741411-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741411
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741411
    reference: chr 2
allele count: 1
allele frequency: 8.697769891799743e-6
allele num: 114972
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3073-16T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2323T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000392827
  ensembl transcript: ENST00000437365
  gene symbol: MAP3K19
  hgvsc: ENST00000437365.1:c.1243-16T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365004
  ensembl transcript: ENST00000375844
  gene symbol: MAP3K19
  hgvsc: ENST00000375844.3:c.619-16T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000351140
  ensembl transcript: ENST00000358371
  gene symbol: MAP3K19
  hgvsc: ENST00000358371.4:c.2734-16T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.619-16T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376647
  ensembl transcript: ENST00000392915
  gene symbol: MAP3K19
  hgvsc: ENST00000392915.1:c.3124-16T>C
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-497-16T>C
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7998
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6949
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7355
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2465
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6887
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3886
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

2-135741411-AAAAGG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 135741411
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 135741406
    reference: chr 2
allele count: 1
allele frequency: 8.697769891799743e-6
allele num: 114972
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376649
  ensembl transcript: ENST00000392917
  gene symbol: MAP3K19
  hgvsc: ENST00000392917.3:c.619-2328_619-2324delCCTTT
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000376650
  ensembl transcript: ENST00000392918
  gene symbol: MAP3K19
  hgvsc: ENST00000392918.3:c.619-21_619-17delCCTTT
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000321160
  ensembl transcript: ENST00000315513
  gene symbol: MAP3K19
  hgvsc: ENST00000315513.3:c.-497-21_-497-17delCCTTT
  variant of: http://identifiers.org/hgnc/26249
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000176601
  ensembl protein: ENSP00000365005
  ensembl transcript: ENST00000375845
  gene symbol: MAP3K19
  hgvsc: ENST00000375845.3:c.3073-21_3073-17delCCTTT
  variant of: http://identifiers.org/hgnc/26249
canonical: true
consequence: intron
filter: PASS
num of homozygotes: 0
reference allele: AAAAGG

GenotypeQuality
all individuals: 63
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2926
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6088
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1271
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 2357
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 17283
bin: 9.75e1
variant carriers: 4266

GenotypeQuality
all individuals: 2330
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 23449
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 3203
allele frequency: 3.776232020749823e-1
allele num: 8482
num of homozygotes: 612

Other
type: Population
allele count: 32
allele frequency: 3.712296983758701e-2
allele num: 862
num of homozygotes: 2

South Asian
type: Population
allele count: 349
allele frequency: 2.146635502521835e-2
allele num: 16258
num of homozygotes: 6

Latino
type: Population
allele count: 514
allele frequency: 4.488298987076493e-2
allele num: 11452
num of homozygotes: 13

European (Finnish)
type: Population
allele count: 139
allele frequency: 2.102874432677761e-2
allele num: 6610
num of homozygotes: 1

African
type: Population
allele count: 116
allele frequency: 1.364705882352941e-2
allele num: 8500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 560
allele frequency: 8.907552331869949e-3
allele num: 62868
num of homozygotes: 2

FS
type: SiteQuality
SIO_000300: 2.491e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.196e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.52e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.34e-1

QD
type: SiteQuality
SIO_000300: 1.548e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.03e-1

DP
type: SiteQuality
SIO_000300: 2.229812e6

MQRankSum
type: SiteQuality
SIO_000300: 1.69e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.515e0

GenotypeQuality
all individuals: 1291
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14060
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 61
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2464
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3087
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6628
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2456
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1779
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25665
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.59073555612115e-5
allele num: 62864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -7.32e-1

FS
type: SiteQuality
SIO_000300: 3.381e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

DP
type: SiteQuality
SIO_000300: 1.974211e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.43e-1

QD
type: SiteQuality
SIO_000300: 1.26e1

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14069
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3087
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2462
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6626
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2456
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1291
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.536417322834646e-4
allele num: 16256
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62848
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.77e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

QD
type: SiteQuality
SIO_000300: 1.56e1

VQSLOD
type: SiteQuality
SIO_000300: 2.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.482e0

MQRankSum
type: SiteQuality
SIO_000300: 6.55e-1

DP
type: SiteQuality
SIO_000300: 1.974402e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.86e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 10

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 9

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 398
bin: 7.5e0
variant carriers: 25

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 6

GenotypeQuality
all individuals: 107
bin: 2.25e1
variant carriers: 12

GenotypeQuality
all individuals: 1611
bin: 7.75e1
variant carriers: 12

GenotypeQuality
all individuals: 354
bin: 8.75e1
variant carriers: 14

GenotypeQuality
all individuals: 21951
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 518
bin: 9.25e1
variant carriers: 16

GenotypeQuality
all individuals: 25585
bin: 9.75e1
variant carriers: 23432

European (Finnish)
type: Population
allele count: 1479
allele frequency: 2.237518910741301e-1
allele num: 6610
num of homozygotes: 177

African
type: Population
allele count: 1437
allele frequency: 1.69178243465976e-1
allele num: 8494
num of homozygotes: 136

East Asian
type: Population
allele count: 1306
allele frequency: 1.540821142048136e-1
allele num: 8476
num of homozygotes: 88

South Asian
type: Population
allele count: 5888
allele frequency: 3.625169314123876e-1
allele num: 16242
num of homozygotes: 1099

European (Non-Finnish)
type: Population
allele count: 14668
allele frequency: 2.335296927240885e-1
allele num: 62810
num of homozygotes: 2117

Latino
type: Population
allele count: 2386
allele frequency: 2.085299772766999e-1
allele num: 11442
num of homozygotes: 248

Other
type: Population
allele count: 256
allele frequency: 2.96983758700696e-1
allele num: 862
num of homozygotes: 41

MQRankSum
type: SiteQuality
SIO_000300: 1.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.64e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

DP
type: SiteQuality
SIO_000300: 2.92764e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.901e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.97e-2

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36901
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2419
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 823
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8436
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3530
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.593777891113094e-5
allele num: 62744
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.28e0

FS
type: SiteQuality
SIO_000300: 3.047e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.83e-1

DP
type: SiteQuality
SIO_000300: 1.713685e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.22e1

GenotypeQuality
all individuals: 8408
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3527
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36751
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2414
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16144
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.178967224711153e-4
allele num: 8482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8472
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.742e0

FS
type: SiteQuality
SIO_000300: 2.183e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

MQ
type: SiteQuality
SIO_000300: 5.94e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.732e0

DP
type: SiteQuality
SIO_000300: 1.71132e6

QD
type: SiteQuality
SIO_000300: 2.548e1

GenotypeQuality
all individuals: 425
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36676
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2398
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8472
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.239157372986369e-4
allele num: 16140
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.9e0

DP
type: SiteQuality
SIO_000300: 1.707953e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.73e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.1e-2

QD
type: SiteQuality
SIO_000300: 1.981e1

VQSLOD
type: SiteQuality
SIO_000300: -1.528e0

FS
type: SiteQuality
SIO_000300: 4.223e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeQuality
all individuals: 80
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35829
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3499
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 8219
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11392
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.205950243652218e-5
allele num: 62384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16004
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 9.340000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.32e0

QD
type: SiteQuality
SIO_000300: 1.439e1

DP
type: SiteQuality
SIO_000300: 1.691e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

FS
type: SiteQuality
SIO_000300: 3.159e0

MQRankSum
type: SiteQuality
SIO_000300: 3.13e-1

GenotypeQuality
all individuals: 666
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1204
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8178
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2696
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3497
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2341
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15984
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.417867342682027e-5
allele num: 62326
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-1

QD
type: SiteQuality
SIO_000300: 1.52e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.059e0

DP
type: SiteQuality
SIO_000300: 1.687102e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.52e-1

GenotypeQuality
all individuals: 2411
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33779
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1598
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3456
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 47
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2601
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7700
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8298
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.317119393556538e-5
allele num: 15830
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61946
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11312
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.473e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.38e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.73e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

VQSLOD
type: SiteQuality
SIO_000300: 4.42e-1

FS
type: SiteQuality
SIO_000300: 3.324e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.91e-1

DP
type: SiteQuality
SIO_000300: 1.650022e6

GenotypeQuality
all individuals: 47
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33779
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2411
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2601
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2229
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3456
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 128
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1598
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15830
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.614309237077455e-5
allele num: 61946
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8298
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.42e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.38e-1

DP
type: SiteQuality
SIO_000300: 1.650022e6

FS
type: SiteQuality
SIO_000300: 3.324e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

QD
type: SiteQuality
SIO_000300: 1.473e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

GenotypeQuality
all individuals: 1386
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3978
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1410
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 744
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6195
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4634
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3422
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1173
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1734
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5688
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1346
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7916
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60524
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.722817208204756e-4
allele num: 11018
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8258
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.429001e6

MQRankSum
type: SiteQuality
SIO_000300: 8.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.24e-1

QD
type: SiteQuality
SIO_000300: 1.449e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.48e0

GenotypeQuality
all individuals: 6195
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4634
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1386
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2823
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 744
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2137
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19726
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3422
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5688
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3978
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.652237129072764e-5
allele num: 60524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8258
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7916
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11018
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.0e-1

QD
type: SiteQuality
SIO_000300: 1.449e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.48e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.12e-1

DP
type: SiteQuality
SIO_000300: 1.429001e6

GenotypeQuality
all individuals: 257
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2111
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1210
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5603
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18791
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2872
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1571
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6140
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1711
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 742
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3418
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.657165583985152e-5
allele num: 60344
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8236
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10972
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.149e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.29e-1

DP
type: SiteQuality
SIO_000300: 1.418871e6

VQSLOD
type: SiteQuality
SIO_000300: -5.633e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQRankSum
type: SiteQuality
SIO_000300: -1.588e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

GenotypeQuality
all individuals: 717
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3023
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1350
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2669
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5792
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1549
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5526
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13047
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1550
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2023
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15158
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.673248109229637e-5
allele num: 59764
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8178
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10872
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.51e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

DP
type: SiteQuality
SIO_000300: 1.361402e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.312e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.196e1

GenotypeQuality
all individuals: 3102
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5641
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3026
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6076
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1326
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 742
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3411
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 488
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3021
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3795
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1949
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14976
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8092
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.69445574081605e-5
allele num: 59016
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7584
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e0

VQSLOD
type: SiteQuality
SIO_000300: -1.144e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.306e0

MQRankSum
type: SiteQuality
SIO_000300: 1.87e-1

QD
type: SiteQuality
SIO_000300: 7.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

DP
type: SiteQuality
SIO_000300: 1.337965e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3181
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1463
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5736
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1104
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1327
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8192
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5073
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3410
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3056
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1470
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5689
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8084
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10702
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58862
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.694336591243807e-5
allele num: 14938
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.134e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.644e0

DP
type: SiteQuality
SIO_000300: 1.329309e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.75e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.26e0

MQRankSum
type: SiteQuality
SIO_000300: -4.15e-1

MQ
type: SiteQuality
SIO_000300: 5.838e1

GenotypeQuality
all individuals: 489
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3676
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1432
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 988
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1249
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4883
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1328
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3469
bin: 9.75e1
variant carriers: 66

GenotypeQuality
all individuals: 7343
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1948
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5851
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6130
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 9.25e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7552
num of homozygotes: 0

African
type: Population
allele count: 60
allele frequency: 7.420232500618353e-3
allele num: 8086
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.738317757009346e-4
allele num: 10700
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14876
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.219512195121951e-3
allele num: 820
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.700391089950689e-5
allele num: 58810
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.43e-1

DP
type: SiteQuality
SIO_000300: 1.326704e6

QD
type: SiteQuality
SIO_000300: 1.49e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

VQSLOD
type: SiteQuality
SIO_000300: 5.44e0

GenotypeQuality
all individuals: 489
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 988
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1249
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5719
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1328
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3181
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4566
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1467
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3074
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6130
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7343
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3469
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1948
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10700
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14876
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8086
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.700391089950689e-5
allele num: 58810
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.326704e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.43e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.49e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.77e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.44e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

GenotypeQuality
all individuals: 490
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1942
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3613
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6150
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4989
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5895
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1442
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3071
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3191
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3408
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6565
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.707825255319876e-5
allele num: 58554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14844
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8056
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.091e0

DP
type: SiteQuality
SIO_000300: 1.325108e6

VQSLOD
type: SiteQuality
SIO_000300: -1.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

MQ
type: SiteQuality
SIO_000300: 5.889e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.936e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.28e-1

QD
type: SiteQuality
SIO_000300: 1.133e1

GenotypeQuality
all individuals: 3523
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 845
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2546
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4106
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3234
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19234
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3096
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5148
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11240
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.619013696855875e-5
allele num: 61766
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9344
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8758
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-3

MQ
type: SiteQuality
SIO_000300: 5.897e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.692e0

VQSLOD
type: SiteQuality
SIO_000300: 1.25e-1

DP
type: SiteQuality
SIO_000300: 2.101695e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.02e-1

QD
type: SiteQuality
SIO_000300: 1.169e1

GenotypeQuality
all individuals: 996
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3441
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3198
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1835
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2731
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3371
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16891
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2693
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4134
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1122
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2176
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7960
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5960
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8232
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10680
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9038
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.68947457340767e-5
allele num: 59190
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.03e-1

QD
type: SiteQuality
SIO_000300: 7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.01e-2

DP
type: SiteQuality
SIO_000300: 2.140401e6

GenotypeQuality
all individuals: 1287
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 747
bin: 1.75e1
variant carriers: 9

GenotypeQuality
all individuals: 2731
bin: 2.5e0
variant carriers: 6

GenotypeQuality
all individuals: 1206
bin: 5.25e1
variant carriers: 7

GenotypeQuality
all individuals: 4134
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1122
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 996
bin: 2.75e1
variant carriers: 5

GenotypeQuality
all individuals: 3198
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3371
bin: 7.75e1
variant carriers: 5

GenotypeQuality
all individuals: 16891
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 2693
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2176
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 2
allele frequency: 2.793296089385475e-3
allele num: 716
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.256281407035176e-4
allele num: 7960
num of homozygotes: 0

African
type: Population
allele count: 17
allele frequency: 1.880947112192963e-3
allele num: 9038
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.617977528089888e-4
allele num: 10680
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.429543245869776e-4
allele num: 8232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5960
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 56
allele frequency: 9.461057611082953e-4
allele num: 59190
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.01e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

QD
type: SiteQuality
SIO_000300: 7.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.03e-1

DP
type: SiteQuality
SIO_000300: 2.140401e6

GenotypeQuality
all individuals: 1287
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1206
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1420
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1835
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3371
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2731
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1333
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2693
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16891
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2871
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3198
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2176
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 716
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5960
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9038
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7960
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8232
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10680
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.68947457340767e-5
allele num: 59190
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.01e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.76e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.6e-2

DP
type: SiteQuality
SIO_000300: 2.140401e6

GenotypeQuality
all individuals: 422
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1147
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5045
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3529
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 727
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1616
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3913
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4125
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2690
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8310
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 22
allele frequency: 3.578515891863756e-4
allele num: 61478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8752
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.571428571428571e-4
allele num: 11200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.692e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.6e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.34e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.879999999999999e-1

DP
type: SiteQuality
SIO_000300: 2.142408e6

QD
type: SiteQuality
SIO_000300: 1.483e1

GenotypeQuality
all individuals: 1618
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5154
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3638
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4217
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 624
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3344
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4021
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11258
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8782
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.607458607940846e-5
allele num: 62210
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.92e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.87e-2

DP
type: SiteQuality
SIO_000300: 2.147976e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.7e-1

FS
type: SiteQuality
SIO_000300: 2.765e0

MQRankSum
type: SiteQuality
SIO_000300: 2.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-1

QD
type: SiteQuality
SIO_000300: 1.402e1

GenotypeQuality
all individuals: 303
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 624
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3344
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4217
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3638
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4021
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19899
bin: 9.75e1
variant carriers: 5

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8782
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.604036520903412e-4
allele num: 8324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.214917215881691e-5
allele num: 62210
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.87e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.46e-1

QD
type: SiteQuality
SIO_000300: 1.402e1

FS
type: SiteQuality
SIO_000300: 2.765e0

DP
type: SiteQuality
SIO_000300: 2.147976e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.92e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

GenotypeQuality
all individuals: 154
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 624
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3295
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2754
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3638
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7771
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4021
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9462
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.201345506967804e-4
allele num: 8324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.822375823822536e-5
allele num: 62210
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.13869278068777e-4
allele num: 8782
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11258
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.87e-2

MQ
type: SiteQuality
SIO_000300: 5.959e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-1

DP
type: SiteQuality
SIO_000300: 2.147976e6

QD
type: SiteQuality
SIO_000300: 1.402e1

VQSLOD
type: SiteQuality
SIO_000300: 1.92e0

MQRankSum
type: SiteQuality
SIO_000300: 2.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.96e-1

FS
type: SiteQuality
SIO_000300: 2.765e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.7e-1

GenotypeQuality
all individuals: 442
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3697
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8060
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4111
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4303
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2791
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5256
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8812
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.208315954955244e-5
allele num: 62338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11278
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.76e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.685e-1

FS
type: SiteQuality
SIO_000300: 1.1224e1

QD
type: SiteQuality
SIO_000300: 1.518e1

MQ
type: SiteQuality
SIO_000300: 5.904e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.589e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.28e-1

DP
type: SiteQuality
SIO_000300: 2.151845e6

GenotypeQuality
all individuals: 19994
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 5256
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3340
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2791
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4111
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3697
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.053740779768177e-4
allele num: 9490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8812
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.660046107465862e-4
allele num: 11278
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62338
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.518e1

DP
type: SiteQuality
SIO_000300: 2.151845e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.62e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.66e-1

FS
type: SiteQuality
SIO_000300: 1.1224e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.589e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.76e-2

MQ
type: SiteQuality
SIO_000300: 5.904e1

VQSLOD
type: SiteQuality
SIO_000300: -4.685e-1

GenotypeQuality
all individuals: 442
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5256
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19994
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 563
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4111
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2791
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3406
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4303
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8060
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8338
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.107481559536354e-4
allele num: 9490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11278
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8812
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62338
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.904e1

QD
type: SiteQuality
SIO_000300: 1.518e1

MQRankSum
type: SiteQuality
SIO_000300: 1.66e-1

FS
type: SiteQuality
SIO_000300: 1.1224e1

VQSLOD
type: SiteQuality
SIO_000300: -4.685e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.589e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.76e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.28e-1

DP
type: SiteQuality
SIO_000300: 2.151845e6

GenotypeQuality
all individuals: 563
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20037
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3717
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1614
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2795
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4325
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4145
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8189
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.100399075824407e-4
allele num: 9522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8840
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.952e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.32e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.84e-2

DP
type: SiteQuality
SIO_000300: 2.155255e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.83e-1

QD
type: SiteQuality
SIO_000300: 1.425e1

VQSLOD
type: SiteQuality
SIO_000300: 5.58e0

GenotypeQuality
all individuals: 108
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8189
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5311
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3426
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2795
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3717
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4145
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 20037
bin: 9.75e1
variant carriers: 55

GenotypeQuality
all individuals: 180
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 29
allele frequency: 4.649373136242665e-4
allele num: 62374
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.426345609065156e-4
allele num: 11296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.100399075824407e-4
allele num: 9522
num of homozygotes: 0

South Asian
type: Population
allele count: 19
allele frequency: 2.149321266968326e-3
allele num: 8840
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.58e0

QD
type: SiteQuality
SIO_000300: 1.425e1

DP
type: SiteQuality
SIO_000300: 2.155255e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.84e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.32e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 157
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4325
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5311
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2795
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3350
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4145
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20037
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3426
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1614
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.100399075824407e-4
allele num: 9522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11296
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8840
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.58e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.425e1

MQ
type: SiteQuality
SIO_000300: 5.952e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.84e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.83e-1

DP
type: SiteQuality
SIO_000300: 2.155255e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.66e-1

GenotypeQuality
all individuals: 116
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 245
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3446
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1642
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20034
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4168
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4376
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8472
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11300
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62524
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.99e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.849e0

VQSLOD
type: SiteQuality
SIO_000300: -1.178e0

MQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

DP
type: SiteQuality
SIO_000300: 2.160827e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.141e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.87e-1

GenotypeQuality
all individuals: 5370
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1662
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3457
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20047
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2833
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.127904353710805e-4
allele num: 8866
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62580
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-1

FS
type: SiteQuality
SIO_000300: 9.848000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-3

QD
type: SiteQuality
SIO_000300: 1.294e1

DP
type: SiteQuality
SIO_000300: 2.163161e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.588e0

VQSLOD
type: SiteQuality
SIO_000300: -6.141e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

GenotypeQuality
all individuals: 8575
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4179
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4380
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3457
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3786
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20047
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5370
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.849557522123894e-5
allele num: 11300
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62580
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.588e0

FS
type: SiteQuality
SIO_000300: 9.848000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

VQSLOD
type: SiteQuality
SIO_000300: -6.141e-1

QD
type: SiteQuality
SIO_000300: 1.294e1

DP
type: SiteQuality
SIO_000300: 2.163161e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.05e-1

GenotypeQuality
all individuals: 698
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2619
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3434
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3099
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 4725
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 663
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3804
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3964
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19060
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7281
bin: 6.25e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.848093083387201e-5
allele num: 61880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.824702476680605e-4
allele num: 6218
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.152073732718894e-4
allele num: 8680
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8306
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.5e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.273e0

QD
type: SiteQuality
SIO_000300: 5.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.044e0

FS
type: SiteQuality
SIO_000300: 1.4168e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.95e-1

DP
type: SiteQuality
SIO_000300: 2.171401e6

MQ
type: SiteQuality
SIO_000300: 5.946e1

GenotypeQuality
all individuals: 2928
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3329
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21131
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7909
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4276
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3591
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.189060642092747e-4
allele num: 8410
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9776
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62828
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.196404e6

MQ
type: SiteQuality
SIO_000300: 5.981e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.198e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 1.1666e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.3e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.242e0

QD
type: SiteQuality
SIO_000300: 2.583e1

GenotypeQuality
all individuals: 3635
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1648
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3240
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3829
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8243
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2971
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5388
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.182872013248167e-4
allele num: 8454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9934
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63114
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8942
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.84e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.117e1

MQRankSum
type: SiteQuality
SIO_000300: 1.67e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.645e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

FS
type: SiteQuality
SIO_000300: 1.042e0

DP
type: SiteQuality
SIO_000300: 2.207639e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 48
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8556
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21226
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2984
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4369
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3656
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5426
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9014
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10034
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63430
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.5056967572305e-4
allele num: 11410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.16e1

DP
type: SiteQuality
SIO_000300: 2.217676e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.883e-1

MQ
type: SiteQuality
SIO_000300: 5.922e1

FS
type: SiteQuality
SIO_000300: 9.151999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.64e-1

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4587
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2394
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21231
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 111
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2984
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8724
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5448
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4372
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.899029895070283e-5
allele num: 10102
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9110
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63662
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.22e0

DP
type: SiteQuality
SIO_000300: 2.224481e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.259e0

FS
type: SiteQuality
SIO_000300: 2.084e0

QD
type: SiteQuality
SIO_000300: 1.409e1

GenotypeQuality
all individuals: 2986
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3858
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21233
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 84
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2610
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4590
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3665
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10106
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.175364362952515e-4
allele num: 8508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9148
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.856e0

MQRankSum
type: SiteQuality
SIO_000300: -4.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

QD
type: SiteQuality
SIO_000300: 1.145e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.162e0

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.09e0

DP
type: SiteQuality
SIO_000300: 2.22581e6

MQ
type: SiteQuality
SIO_000300: 5.758e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

GenotypeQuality
all individuals: 21237
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 4594
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1270
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4377
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2986
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5469
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3667
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10184
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.50385423966363e-4
allele num: 8562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.122462998813464e-5
allele num: 64052
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.8e-2

MQ
type: SiteQuality
SIO_000300: 5.94e1

DP
type: SiteQuality
SIO_000300: 2.237323e6

FS
type: SiteQuality
SIO_000300: 5.669999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.22e-1

QD
type: SiteQuality
SIO_000300: 1.23e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.13e-1

GenotypeQuality
all individuals: 80
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3668
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2985
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8989
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4594
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1129
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4378
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5474
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.559819060988925e-5
allele num: 64110
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166588894073728e-4
allele num: 8572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9580
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

DP
type: SiteQuality
SIO_000300: 2.238778e6

QD
type: SiteQuality
SIO_000300: 1.269e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.15e-1

FS
type: SiteQuality
SIO_000300: 1.402e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQ
type: SiteQuality
SIO_000300: 5.972e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.16e0

GenotypeQuality
all individuals: 214
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4600
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9099
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3865
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5482
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3668
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10216
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 4.043671653861706e-4
allele num: 9892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.91e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.86e-1

QD
type: SiteQuality
SIO_000300: 1.175e1

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

DP
type: SiteQuality
SIO_000300: 2.243927e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.91e-1

GenotypeQuality
all individuals: 44
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4601
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3667
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 119
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 57
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3870
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 9313
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21263
bin: 9.75e1
variant carriers: 25

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2989
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10238
num of homozygotes: 0

South Asian
type: Population
allele count: 25
allele frequency: 2.393260578211756e-3
allele num: 10446
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.550435672423951e-5
allele num: 64498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.25125e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.39e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

MQRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.02e-1

FS
type: SiteQuality
SIO_000300: 1.124e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.999999999999999e-3

QD
type: SiteQuality
SIO_000300: 1.253e1

GenotypeQuality
all individuals: 3144
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5521
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2987
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3877
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4609
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4383
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3668
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.473830477072719e-4
allele num: 8636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65014
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.39e-1

DP
type: SiteQuality
SIO_000300: 2.265331e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.909e1

QD
type: SiteQuality
SIO_000300: 1.199e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.6e0

GenotypeQuality
all individuals: 2973
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4608
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3877
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5531
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21257
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 4383
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12156
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 9.261403102570039e-4
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.57e-1

FS
type: SiteQuality
SIO_000300: 5.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

MQ
type: SiteQuality
SIO_000300: 5.959e1

DP
type: SiteQuality
SIO_000300: 2.270288e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e-1

QD
type: SiteQuality
SIO_000300: 1.415e1

GenotypeQuality
all individuals: 10569
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5553
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21257
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3668
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4387
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4608
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3878
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530456075910621e-5
allele num: 65340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 2.302e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.62e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

MQRankSum
type: SiteQuality
SIO_000300: 9.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

QD
type: SiteQuality
SIO_000300: 1.158e1

DP
type: SiteQuality
SIO_000300: 2.275028e6

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.598e0

GenotypeQuality
all individuals: 4608
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21257
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 124
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3668
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4384
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2987
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2619
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3881
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5562
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10724
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12738
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.708737864077671e-5
allele num: 10300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.895e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.9e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.113e0

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

DP
type: SiteQuality
SIO_000300: 2.277297e6

QD
type: SiteQuality
SIO_000300: 1.273e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

GenotypeQuality
all individuals: 163
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3885
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21260
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 76
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3668
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2987
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5591
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11443
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4386
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13648
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522626225714112e-5
allele num: 65676
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.543e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.81e-1

DP
type: SiteQuality
SIO_000300: 2.288074e6

FS
type: SiteQuality
SIO_000300: 4.391e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.54e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2987
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3892
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21260
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 91
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4607
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11685
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3668
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13940
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519987840097279e-5
allele num: 65790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

QD
type: SiteQuality
SIO_000300: 1.36e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.272e0

MQRankSum
type: SiteQuality
SIO_000300: -1.29e-1

FS
type: SiteQuality
SIO_000300: 8.110000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.292102e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11740
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1875
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3669
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4608
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2986
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3893
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65796
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13994
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 2.292553e6

QD
type: SiteQuality
SIO_000300: 9.6e0

FS
type: SiteQuality
SIO_000300: 7.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.86e0

VQSLOD
type: SiteQuality
SIO_000300: 4.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

MQRankSum
type: SiteQuality
SIO_000300: 6.96e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

GenotypeQuality
all individuals: 79
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3670
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21261
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1767
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4611
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5593
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4387
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518326197200206e-5
allele num: 65862
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.066139061616732e-5
allele num: 14152
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.55e-1

QD
type: SiteQuality
SIO_000300: 1.446e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.65e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.295015e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 2984
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3900
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5595
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4385
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4610
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21263
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11845
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.999860002799944e-5
allele num: 14286
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65916
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.356e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e0

MQRankSum
type: SiteQuality
SIO_000300: 7.02e-1

FS
type: SiteQuality
SIO_000300: 5.008e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.296229e6

GenotypeQuality
all individuals: 129
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11768
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1774
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3669
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4385
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4609
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2984
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5604
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21262
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516944267467613e-5
allele num: 65922
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.695e0

MQRankSum
type: SiteQuality
SIO_000300: -1.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.479e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.21e-1

DP
type: SiteQuality
SIO_000300: 2.295916e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

GenotypeQuality
all individuals: 95
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4387
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3900
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3669
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21263
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 133
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1823
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11685
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65910
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14360
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.701202949165696e-5
allele num: 10308
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.091e1

MQRankSum
type: SiteQuality
SIO_000300: -3.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.012e0

FS
type: SiteQuality
SIO_000300: 2.88e0

VQSLOD
type: SiteQuality
SIO_000300: 4.5e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 2.295458e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.489e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.447e0

GenotypeQuality
all individuals: 3669
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3905
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11313
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5595
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2985
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14174
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51758885482745e-5
allele num: 65894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.331e0

QD
type: SiteQuality
SIO_000300: 8.699999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: 4.07e-1

DP
type: SiteQuality
SIO_000300: 2.291659e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.8e-2

FS
type: SiteQuality
SIO_000300: 2.081e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.68e-1

GenotypeQuality
all individuals: 11241
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4388
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5593
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2116
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4609
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21264
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2985
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3669
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.658008658008658e-5
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.97e-1

QD
type: SiteQuality
SIO_000300: 1.377e1

MQRankSum
type: SiteQuality
SIO_000300: -1.021e0

MQ
type: SiteQuality
SIO_000300: 5.984e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.88e0

DP
type: SiteQuality
SIO_000300: 2.290979e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.33e-1

GenotypeQuality
all individuals: 246
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10686
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3898
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21266
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2985
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5569
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65788
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.204610951008646e-5
allele num: 13880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10216
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

QD
type: SiteQuality
SIO_000300: 1.269e1

MQRankSum
type: SiteQuality
SIO_000300: 1.81e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.24e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-3

DP
type: SiteQuality
SIO_000300: 2.285019e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

GenotypeQuality
all individuals: 5568
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3668
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4613
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2491
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3898
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4386
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2986
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10661
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10210
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.520218911523259e-5
allele num: 65780
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.284346e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -6.64e-1

QD
type: SiteQuality
SIO_000300: 8.94e0

MQRankSum
type: SiteQuality
SIO_000300: -1.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.301e0

FS
type: SiteQuality
SIO_000300: 2.198e0

MQ
type: SiteQuality
SIO_000300: 5.715e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.1e-2

GenotypeQuality
all individuals: 4610
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3667
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5552
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4382
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2987
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3894
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10298
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10190
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.31528895391368e-5
allele num: 13670
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 32
allele frequency: 4.86677211339579e-4
allele num: 65752
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.69e0

MQRankSum
type: SiteQuality
SIO_000300: 1.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.04e0

QD
type: SiteQuality
SIO_000300: 1.403e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

DP
type: SiteQuality
SIO_000300: 2.282211e6

FS
type: SiteQuality
SIO_000300: 1.118e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.24e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.47e-1

GenotypeQuality
all individuals: 164
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10179
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4383
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21272
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3896
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4611
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3668
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2986
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10182
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.051e1

MQRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

MQ
type: SiteQuality
SIO_000300: 5.937e1

FS
type: SiteQuality
SIO_000300: 1.0027e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.6e0

VQSLOD
type: SiteQuality
SIO_000300: -8.887e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.47e-1

DP
type: SiteQuality
SIO_000300: 2.279193e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e-1

GenotypeQuality
all individuals: 3896
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2806
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5549
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4382
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4611
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21273
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2986
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13592
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.821253191907288e-5
allele num: 10182
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65706
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.43e-1

QD
type: SiteQuality
SIO_000300: 1.264e1

DP
type: SiteQuality
SIO_000300: 2.279107e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.76e-1

MQ
type: SiteQuality
SIO_000300: 5.937e1

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.41e-1

GenotypeQuality
all individuals: 9467
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21274
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 58
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3373
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4611
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3892
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3669
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2986
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526111772426212e-5
allele num: 65526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10086
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12998
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.84e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.5e-1

DP
type: SiteQuality
SIO_000300: 2.267027e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -9.19e-2

FS
type: SiteQuality
SIO_000300: 1.17e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3380
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9381
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21273
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3669
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4608
bin: 7.75e1
variant carriers: 1

South Asian
type: Population
allele count: 2
allele frequency: 1.547269070091289e-4
allele num: 12926
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10082
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.93e-1

QD
type: SiteQuality
SIO_000300: 1.17e1

FS
type: SiteQuality
SIO_000300: 1.754e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.49e0

MQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

DP
type: SiteQuality
SIO_000300: 2.266189e6

VQSLOD
type: SiteQuality
SIO_000300: 7.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

GenotypeQuality
all individuals: 5510
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2986
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3420
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9247
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3890
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21272
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10068
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65488
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.766387076731904e-5
allele num: 12876
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.449e0

QD
type: SiteQuality
SIO_000300: 1.06e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e0

MQRankSum
type: SiteQuality
SIO_000300: 2.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.772e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.97e1

FS
type: SiteQuality
SIO_000300: 6.941e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e0

DP
type: SiteQuality
SIO_000300: 2.264164e6

GenotypeQuality
all individuals: 482
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2986
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3890
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21273
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8832
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4609
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3668
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5484
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10000
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531581204435459e-5
allele num: 65292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12406
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.951e0

FS
type: SiteQuality
SIO_000300: 6.788e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.8e-1

DP
type: SiteQuality
SIO_000300: 2.255353e6

QD
type: SiteQuality
SIO_000300: 1.329e1

GenotypeQuality
all individuals: 169
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2986
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4384
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3489
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3668
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4609
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21275
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8688
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5473
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65242
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.674531575294934e-5
allele num: 11528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12144
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9966
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.929e1

VQSLOD
type: SiteQuality
SIO_000300: 5.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

DP
type: SiteQuality
SIO_000300: 2.252239e6

QD
type: SiteQuality
SIO_000300: 1.073e1