3-133472504-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133472504
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133472504
    reference: chr 3
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.282T>A
  hgvsp: ENSP00000385834.3:p.Asn94Lys
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.447T>A
  variant of: http://identifiers.org/hgnc/11759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000417468
  ensembl transcript: ENST00000466911
  gene symbol: TF
  hgvsc: ENST00000466911.1:c.150T>A
  hgvsp: ENSP00000417468.1:p.Asn50Lys
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.374T>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.-100T>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.282T>A
  hgvsp: ENSP00000418396.1:p.Asn94Lys
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-3272T>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.-100T>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*19T>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.330T>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000474287
  gene symbol: TF
  hgvsc: ENST00000474287.1:n.395T>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000460531
  gene symbol: TF
  hgvsc: ENST00000460531.1:n.157T>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.511T>A
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7731
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16136
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11623
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6935
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn94Lys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP

3-133472508-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133472508
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133472508
    reference: chr 3
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000474287
  gene symbol: TF
  hgvsc: ENST00000474287.1:n.399C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.-96C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.-96C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.515C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000460531
  gene symbol: TF
  hgvsc: ENST00000460531.1:n.161C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000417468
  ensembl transcript: ENST00000466911
  gene symbol: TF
  hgvsc: ENST00000466911.1:c.154C>T
  hgvsp: ENST00000466911.1:c.154C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*23C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.378C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.334C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.286C>T
  hgvsp: ENST00000494430.1:c.286C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.451C>T
  variant of: http://identifiers.org/hgnc/11759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-3268C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.286C>T
  hgvsp: ENST00000402696.3:c.286C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11624
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6935
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7723
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu96Leu
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS

http://identifiers.org/exac.variant/3-133472524-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133472524
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133472524
    reference: chr 3
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*39C>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.350C>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.302C>A
  hgvsp: ENSP00000418396.1:p.Ala101Glu
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000417468
  ensembl transcript: ENST00000466911
  gene symbol: TF
  hgvsc: ENST00000466911.1:c.170C>A
  hgvsp: ENSP00000417468.1:p.Ala57Glu
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.394C>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.-80C>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.302C>A
  hgvsp: ENSP00000385834.3:p.Ala101Glu
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000460531
  gene symbol: TF
  hgvsc: ENST00000460531.1:n.177C>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000474287
  gene symbol: TF
  hgvsc: ENST00000474287.1:n.415C>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.467C>A
  variant of: http://identifiers.org/hgnc/11759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.531C>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-3252C>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.-80C>A
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7711
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16131
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala101Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum

3-133472528-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133472528
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133472528
    reference: chr 3
allele count: 3
allele frequency: 2.471251112063001e-5
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.-76G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.-76G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-3248G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000460531
  gene symbol: TF
  hgvsc: ENST00000460531.1:n.181G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.306G>A
  hgvsp: ENST00000494430.1:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000417468
  ensembl transcript: ENST00000466911
  gene symbol: TF
  hgvsc: ENST00000466911.1:c.174G>A
  hgvsp: ENST00000466911.1:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.306G>A
  hgvsp: ENST00000402696.3:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.535G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.471G>A
  variant of: http://identifiers.org/hgnc/11759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*43G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.398G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000474287
  gene symbol: TF
  hgvsc: ENST00000474287.1:n.419G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.354G>A
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6937
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7699
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu102Glu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD

3-133472533-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133472533
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133472533
    reference: chr 3
allele count: 2
allele frequency: 1.647582173160887e-5
allele num: 121390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.311A>G
  hgvsp: ENSP00000418396.1:p.Tyr104Cys
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-3243A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.311A>G
  hgvsp: ENSP00000385834.3:p.Tyr104Cys
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.-71A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.403A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000417468
  ensembl transcript: ENST00000466911
  gene symbol: TF
  hgvsc: ENST00000466911.1:c.179A>G
  hgvsp: ENSP00000417468.1:p.Tyr60Cys
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*48A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.359A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000474287
  gene symbol: TF
  hgvsc: ENST00000474287.1:n.424A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.-71A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000460531
  gene symbol: TF
  hgvsc: ENST00000460531.1:n.186A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.476A>G
  variant of: http://identifiers.org/hgnc/11759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.540A>G
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16141
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr104Cys
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

3-133472534-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133472534
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133472534
    reference: chr 3
allele count: 2
allele frequency: 1.647609318878308e-5
allele num: 121388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.404T>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000474287
  gene symbol: TF
  hgvsc: ENST00000474287.1:n.425T>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.477T>A
  variant of: http://identifiers.org/hgnc/11759
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.-70T>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.541T>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-3242T>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.312T>A
  hgvsp: ENSP00000418396.1:p.Tyr104Ter
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.312T>A
  hgvsp: ENSP00000385834.3:p.Tyr104Ter
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000460531
  gene symbol: TF
  hgvsc: ENST00000460531.1:n.187T>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.-70T>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*49T>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000417468
  ensembl transcript: ENST00000466911
  gene symbol: TF
  hgvsc: ENST00000466911.1:c.180T>A
  hgvsp: ENSP00000417468.1:p.Tyr60Ter
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.360T>A
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11626
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6936
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16141
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr104Ter
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP

3-133472537-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133472537
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133472537
    reference: chr 3
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.407G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.480G>A
  variant of: http://identifiers.org/hgnc/11759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000474287
  gene symbol: TF
  hgvsc: ENST00000474287.1:n.428G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.-67G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*52G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-3239G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000460531
  gene symbol: TF
  hgvsc: ENST00000460531.1:n.190G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.544G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000417468
  ensembl transcript: ENST00000466911
  gene symbol: TF
  hgvsc: ENST00000466911.1:c.183G>A
  hgvsp: ENST00000466911.1:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.315G>A
  hgvsp: ENST00000494430.1:c.315G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.363G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.-67G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.315G>A
  hgvsp: ENST00000402696.3:c.315G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6939
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7672
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly105Gly
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP

3-133472544-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133472544
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133472544
    reference: chr 3
allele count: 4
allele frequency: 3.296196189597204e-5
allele num: 121352
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000417468
  ensembl transcript: ENST00000466911
  gene symbol: TF
  hgvsc: ENST00000466911.1:c.190G>C
  hgvsp: ENSP00000417468.1:p.Glu64Gln
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.414G>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.322G>C
  hgvsp: ENSP00000385834.3:p.Glu108Gln
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.322G>C
  hgvsp: ENSP00000418396.1:p.Glu108Gln
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.-60G>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.551G>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.370G>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000474287
  gene symbol: TF
  hgvsc: ENST00000474287.1:n.435G>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*59G>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.-60G>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000460531
  gene symbol: TF
  hgvsc: ENST00000460531.1:n.197G>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.487G>C
  variant of: http://identifiers.org/hgnc/11759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-3232G>C
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7625
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6936
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16129
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11623
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu108Gln
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

3-133472546-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133472546
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133472546
    reference: chr 3
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*61G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000417468
  ensembl transcript: ENST00000466911
  gene symbol: TF
  hgvsc: ENST00000466911.1:c.192G>A
  hgvsp: ENST00000466911.1:c.192G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.324G>A
  hgvsp: ENST00000402696.3:c.324G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.372G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.416G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-3230G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.489G>A
  variant of: http://identifiers.org/hgnc/11759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000474287
  gene symbol: TF
  hgvsc: ENST00000474287.1:n.437G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.553G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.-58G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.-58G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000460531
  gene symbol: TF
  hgvsc: ENST00000460531.1:n.199G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.324G>A
  hgvsp: ENST00000494430.1:c.324G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6938
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11622
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.324G>A
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD

3-133472550-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133472550
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133472550
    reference: chr 3
allele count: 5
allele frequency: 4.121875618281343e-5
allele num: 121304
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000417468
  ensembl transcript: ENST00000466911
  gene symbol: TF
  hgvsc: ENST00000466911.1:c.193+3A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.554+3A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.-57+3A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.373+3A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.325+3A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.417+3A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.325+3A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.-57+3A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000460531
  gene symbol: TF
  hgvsc: ENST00000460531.1:n.203A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.490+3A>G
  variant of: http://identifiers.org/hgnc/11759
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*62+3A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000474287
  gene symbol: TF
  hgvsc: ENST00000474287.1:n.441A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-3226A>G
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6938
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16124
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4485
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.325+3A>G
num of homozygotes: 1
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum

3-133472556-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133472556
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133472557
    reference: chr 3
allele count: 1
allele frequency: 8.251914444151043e-6
allele num: 121184
alternate allele: TC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.490+12dupC
  variant of: http://identifiers.org/hgnc/11759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000460531
  gene symbol: TF
  hgvsc: ENST00000460531.1:n.212dupC
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.373+12dupC
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.325+12dupC
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.-57+12dupC
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000417468
  ensembl transcript: ENST00000466911
  gene symbol: TF
  hgvsc: ENST00000466911.1:c.193+12dupC
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-3217dupC
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000474287
  gene symbol: TF
  hgvsc: ENST00000474287.1:n.450dupC
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.417+12dupC
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.-57+12dupC
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.325+12dupC
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.554+12dupC
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*62+12dupC
  variant of: http://identifiers.org/hgnc/11740
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16069
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6936
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4490
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

3-133472563-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133472563
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133472563
    reference: chr 3
allele count: 3
allele frequency: 2.479461791493793e-5
allele num: 120994
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.490+16G>A
  variant of: http://identifiers.org/hgnc/11759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.325+16G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.554+16G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.325+16G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.-57+16G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000474287
  gene symbol: TF
  hgvsc: ENST00000474287.1:n.454G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000417468
  ensembl transcript: ENST00000466911
  gene symbol: TF
  hgvsc: ENST00000466911.1:c.193+16G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-3213G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.-57+16G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000460531
  gene symbol: TF
  hgvsc: ENST00000460531.1:n.216G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.373+16G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.417+16G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*62+16G>A
  variant of: http://identifiers.org/hgnc/11740
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15926
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4480
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7008
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

3-133472570-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133472570
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133472570
    reference: chr 3
allele count: 3
allele frequency: 2.483567064589301e-5
allele num: 120794
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000417468
  ensembl transcript: ENST00000466911
  gene symbol: TF
  hgvsc: ENST00000466911.1:c.193+23G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000460531
  gene symbol: TF
  hgvsc: ENST00000460531.1:n.223G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.-57+23G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.325+23G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.490+23G>A
  variant of: http://identifiers.org/hgnc/11759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.417+23G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.325+23G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-3206G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.373+23G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.-57+23G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000474287
  gene symbol: TF
  hgvsc: ENST00000474287.1:n.461G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.554+23G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*62+23G>A
  variant of: http://identifiers.org/hgnc/11740
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11306
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6327
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15334
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6889
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum

3-133472571-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133472571
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133472571
    reference: chr 3
allele count: 4
allele frequency: 3.311587243765937e-5
allele num: 120788
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.-57+24G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000460531
  gene symbol: TF
  hgvsc: ENST00000460531.1:n.224G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.325+24G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.554+24G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.373+24G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000474287
  gene symbol: TF
  hgvsc: ENST00000474287.1:n.462G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.417+24G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000417468
  ensembl transcript: ENST00000466911
  gene symbol: TF
  hgvsc: ENST00000466911.1:c.193+24G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.490+24G>A
  variant of: http://identifiers.org/hgnc/11759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*62+24G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.-57+24G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-3205G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.325+24G>A
  variant of: http://identifiers.org/hgnc/11740
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4475
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6337
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

3-133472596-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133472596
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133472596
    reference: chr 3
allele count: 1
allele frequency: 8.335139280177371e-6
allele num: 119974
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000417468
  ensembl transcript: ENST00000466911
  gene symbol: TF
  hgvsc: ENST00000466911.1:c.193+49A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.325+49A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000474287
  gene symbol: TF
  hgvsc: ENST00000474287.1:n.487A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.325+49A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.-57+49A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000460531
  gene symbol: TF
  hgvsc: ENST00000460531.1:n.249A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-3180A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*62+49A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.373+49A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.490+49A>G
  variant of: http://identifiers.org/hgnc/11759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.554+49A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.-57+49A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.417+49A>G
  variant of: http://identifiers.org/hgnc/11740
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5452
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9987
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8979
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6633
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

3-133472597-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133472597
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133472597
    reference: chr 3
allele count: 1
allele frequency: 8.346827370916315e-6
allele num: 119806
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.554+50T>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.325+50T>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.373+50T>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.-57+50T>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000460531
  gene symbol: TF
  hgvsc: ENST00000460531.1:n.250T>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.490+50T>G
  variant of: http://identifiers.org/hgnc/11759
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.325+50T>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000474287
  gene symbol: TF
  hgvsc: ENST00000474287.1:n.488T>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*62+50T>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000417468
  ensembl transcript: ENST00000466911
  gene symbol: TF
  hgvsc: ENST00000466911.1:c.193+50T>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.-57+50T>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.417+50T>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-3179T>G
  variant of: http://identifiers.org/hgnc/11740
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8785
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5439
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9782
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6614
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum

3-133472598-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133472598
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133472598
    reference: chr 3
allele count: 1
allele frequency: 8.349336227769892e-6
allele num: 119770
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000474287
  gene symbol: TF
  hgvsc: ENST00000474287.1:n.489G>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-3178G>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.-57+51G>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000417468
  ensembl transcript: ENST00000466911
  gene symbol: TF
  hgvsc: ENST00000466911.1:c.193+51G>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.554+51G>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.-57+51G>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.373+51G>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000460531
  gene symbol: TF
  hgvsc: ENST00000460531.1:n.251G>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.325+51G>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.490+51G>T
  variant of: http://identifiers.org/hgnc/11759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.417+51G>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*62+51G>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.325+51G>T
  variant of: http://identifiers.org/hgnc/11740
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5441
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8747
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8929
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

3-133473294-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473294
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473294
    reference: chr 3
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.374-45C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000417468
  ensembl transcript: ENST00000466911
  gene symbol: TF
  hgvsc: ENST00000466911.1:c.194-45C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*63-45C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.555-45C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.326-45C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.491-45C>T
  variant of: http://identifiers.org/hgnc/11759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.418-45C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.326-53C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.-56-45C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2482C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.-56-45C>T
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3671
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4118
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7981
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6022
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6719
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7379
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4965
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-133473301-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473301
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473301
    reference: chr 3
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.-56-38C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.418-38C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.-56-38C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000417468
  ensembl transcript: ENST00000466911
  gene symbol: TF
  hgvsc: ENST00000466911.1:c.194-38C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.326-38C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*63-38C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2475C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.326-46C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.555-38C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.374-38C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.491-38C>G
  variant of: http://identifiers.org/hgnc/11759
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7989
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7400
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4964
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3672
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6108
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6723
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD

3-133473304-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473304
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473304
    reference: chr 3
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.418-35G>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*63-35G>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.326-43G>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2472G>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.374-35G>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000417468
  ensembl transcript: ENST00000466911
  gene symbol: TF
  hgvsc: ENST00000466911.1:c.194-35G>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.-56-35G>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.326-35G>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.-56-35G>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.491-35G>C
  variant of: http://identifiers.org/hgnc/11759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.555-35G>C
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6151
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4964
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6724
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7994
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44334
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
reference allele: G
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

3-133473307-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473307
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473307
    reference: chr 3
allele count: 2
allele frequency: 1.647880825258717e-5
allele num: 121368
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.374-32G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.326-32G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.-56-32G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.491-32G>A
  variant of: http://identifiers.org/hgnc/11759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.-56-32G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2469G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.418-32G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.326-40G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000417468
  ensembl transcript: ENST00000466911
  gene symbol: TF
  hgvsc: ENST00000466911.1:c.194-32G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.555-32G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*63-32G>A
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7409
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6725
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6168
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4118
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4965
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7998
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

3-133473309-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473309
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473309
    reference: chr 3
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.326-38G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.374-30G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.326-30G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.-56-30G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000417468
  ensembl transcript: ENST00000466911
  gene symbol: TF
  hgvsc: ENST00000466911.1:c.194-30G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.491-30G>A
  variant of: http://identifiers.org/hgnc/11759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*63-30G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2467G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.555-30G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.418-30G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.-56-30G>A
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6725
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8001
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4965
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7416
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4122
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2079
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD

3-133473310-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473310
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473310
    reference: chr 3
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.491-29G>A
  variant of: http://identifiers.org/hgnc/11759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.374-29G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2466G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.326-29G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.326-37G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.-56-29G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.418-29G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.-56-29G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.555-29G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*63-29G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000417468
  ensembl transcript: ENST00000466911
  gene symbol: TF
  hgvsc: ENST00000466911.1:c.194-29G>A
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7419
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4963
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8000
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3674
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6725
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/3-133473312-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473312
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473312
    reference: chr 3
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.-56-27C>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.-56-27C>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.491-27C>A
  variant of: http://identifiers.org/hgnc/11759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.555-27C>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.326-27C>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.374-27C>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000417468
  ensembl transcript: ENST00000466911
  gene symbol: TF
  hgvsc: ENST00000466911.1:c.194-27C>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.418-27C>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2464C>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*63-27C>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.326-35C>A
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6724
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8000
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7416
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4963
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3674
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2857
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

3-133473313-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473313
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473313
    reference: chr 3
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.-56-26C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2463C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.418-26C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000417468
  ensembl transcript: ENST00000466911
  gene symbol: TF
  hgvsc: ENST00000466911.1:c.194-26C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.326-26C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.555-26C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.491-26C>T
  variant of: http://identifiers.org/hgnc/11759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.374-26C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.-56-26C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.326-34C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*63-26C>T
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7415
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6196
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3675
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6724
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4963
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7999
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1694
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

3-133473316-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473316
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473316
    reference: chr 3
allele count: 346
allele frequency: 2.850223240028337e-3
allele num: 121394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.555-23C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.-56-23C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.418-23C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.326-31C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2460C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.374-23C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.326-23C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.-56-23C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000417468
  ensembl transcript: ENST00000466911
  gene symbol: TF
  hgvsc: ENST00000466911.1:c.194-23C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*63-23C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.491-23C>G
  variant of: http://identifiers.org/hgnc/11759
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6721
  bin: 5.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 7974
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 7.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 8.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6170
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 9.75e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 6.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 8.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 7390
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 5.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 7.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 8169
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 9.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 3686
  bin: 6.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44423
  bin: 9.75e1
  variant carriers: 345
num of homozygotes: 1
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

3-133473318-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473318
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473318
    reference: chr 3
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.-56-21A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.374-21A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.326-29A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.418-21A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*63-21A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.555-21A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000417468
  ensembl transcript: ENST00000466911
  gene symbol: TF
  hgvsc: ENST00000466911.1:c.194-21A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.491-21A>G
  variant of: http://identifiers.org/hgnc/11759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2458A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.326-21A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.-56-21A>G
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7405
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3687
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6714
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8177
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7985
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4959
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: MQ

3-133473320-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473320
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473320
    reference: chr 3
allele count: 15
allele frequency: 1.235645913307083e-4
allele num: 121394
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.326-19T>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*63-19T>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.-56-19T>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.326-27T>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.-56-19T>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.374-19T>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.555-19T>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000417468
  ensembl transcript: ENST00000466911
  gene symbol: TF
  hgvsc: ENST00000466911.1:c.194-19T>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.418-19T>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.491-19T>C
  variant of: http://identifiers.org/hgnc/11759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2456T>C
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3687
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7981
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6190
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6716
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7405
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8178
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4960
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

3-133473321-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473321
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473321
    reference: chr 3
allele count: 15
allele frequency: 1.2356255560315e-4
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.326-26C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.491-18C>T
  variant of: http://identifiers.org/hgnc/11759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.555-18C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2455C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.-56-18C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.418-18C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.326-18C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.-56-18C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.374-18C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*63-18C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000417468
  ensembl transcript: ENST00000466911
  gene symbol: TF
  hgvsc: ENST00000466911.1:c.194-18C>T
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8178
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7980
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4960
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7406
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6717
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6192
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4155
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3687
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2122
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

3-133473342-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473342
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473342
    reference: chr 3
allele count: 8
allele frequency: 6.589243060703402e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.-53C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*66C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.329C>T
  hgvsp: ENSP00000385834.3:p.Pro110Leu
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.558C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.326-5C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.377C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.-53C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000417468
  ensembl transcript: ENST00000466911
  gene symbol: TF
  hgvsc: ENST00000466911.1:c.197C>T
  hgvsp: ENSP00000417468.1:p.Pro66Leu
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2434C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.421C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.494C>T
  variant of: http://identifiers.org/hgnc/11759
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4959
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7981
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3688
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7412
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6201
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6716
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4166
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro110Leu
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

3-133473346-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473346
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473346
    reference: chr 3
allele count: 240
allele frequency: 1.976772918211021e-3
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.-49G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.381G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.562G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.-49G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.333G>A
  hgvsp: ENST00000402696.3:c.333G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.425G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.498G>A
  variant of: http://identifiers.org/hgnc/11759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*70G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.326-1G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2430G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000417468
  ensembl transcript: ENST00000466911
  gene symbol: TF
  hgvsc: ENST00000466911.1:c.201G>A
  hgvsp: ENST00000466911.1:c.201G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11740
canonical: false
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 9.75e1
  variant carriers: 181
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7954
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7381
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6699
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3674
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 8.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 4942
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8146
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 9.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 6173
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.326-1G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

3-133473347-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473347
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473347
    reference: chr 3
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.334A>G
  hgvsp: ENSP00000385834.3:p.Thr112Ala
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.499A>G
  variant of: http://identifiers.org/hgnc/11759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.426A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.-48A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.563A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*71A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000417468
  ensembl transcript: ENST00000466911
  gene symbol: TF
  hgvsc: ENST00000466911.1:c.202A>G
  hgvsp: ENSP00000417468.1:p.Thr68Ala
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.326A>G
  hgvsp: ENSP00000418396.1:p.Asp109Gly
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.-48A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2429A>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.382A>G
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6712
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7963
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4964
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr112Ala
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum

3-133473365-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473365
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473365
    reference: chr 3
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000417468
  ensembl transcript: ENST00000466911
  gene symbol: TF
  hgvsc: ENST00000466911.1:c.220G>A
  hgvsp: ENSP00000417468.1:p.Ala74Thr
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.400G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2411G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.-30G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.344G>A
  hgvsp: ENSP00000418396.1:p.Cys115Tyr
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*89G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.517G>A
  variant of: http://identifiers.org/hgnc/11759
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.-30G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.352G>A
  hgvsp: ENSP00000385834.3:p.Ala118Thr
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.581G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.444G>A
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6712
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7962
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7388
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4964
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8149
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala118Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

3-133473390-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473390
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473390
    reference: chr 3
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.*6T>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2386T>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.469T>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.-5T>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.377T>C
  hgvsp: ENSP00000385834.3:p.Phe126Ser
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.606T>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*114T>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.-5T>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.542T>C
  variant of: http://identifiers.org/hgnc/11759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.425T>C
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7961
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6715
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6178
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7390
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4153
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Phe126Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

3-133473391-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473391
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473391
    reference: chr 3
allele count: 165
allele frequency: 1.369430980678574e-3
allele num: 120488
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.-4C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.-4C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2385C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.378C>T
  hgvsp: ENST00000402696.3:c.378C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.470C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.607C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.426C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.*7C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*115C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.543C>T
  variant of: http://identifiers.org/hgnc/11759
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8067
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 6686
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7900
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 7.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 8.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 8.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 6108
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4101
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4924
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3666
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 9.75e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7296
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 7.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 2.5e0
  variant carriers: 5
hgvs: p.Phe126Phe
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-133473396-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473396
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473396
    reference: chr 3
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.2T>C
  hgvsp: ENSP00000264998.3:p.Met1?
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.2T>C
  hgvsp: ENSP00000419338.1:p.Met1?
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*120T>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.612T>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.431T>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2380T>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.383T>C
  hgvsp: ENSP00000385834.3:p.Met128Thr
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.*12T>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.548T>C
  variant of: http://identifiers.org/hgnc/11759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.475T>C
  variant of: http://identifiers.org/hgnc/11740
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8134
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2645
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4965
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6746
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/3-133473400-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473400
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473400
    reference: chr 3
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.435C>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.6C>A
  hgvsp: ENSP00000264998.3:p.Asn2Lys
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.6C>A
  hgvsp: ENSP00000419338.1:p.Asn2Lys
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.387C>A
  hgvsp: ENSP00000385834.3:p.Asn129Lys
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*124C>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.616C>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.552C>A
  variant of: http://identifiers.org/hgnc/11759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.*16C>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2376C>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.479C>A
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4965
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8134
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6746
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7364
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn129Lys
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD

3-133473407-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473407
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473407
    reference: chr 3
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.394C>G
  hgvsp: ENSP00000385834.3:p.Arg132Gly
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.*23C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.559C>G
  variant of: http://identifiers.org/hgnc/11759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.442C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.486C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.13C>G
  hgvsp: ENSP00000264998.3:p.Arg5Gly
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2369C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*131C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.13C>G
  hgvsp: ENSP00000419338.1:p.Arg5Gly
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.623C>G
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2645
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6746
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8133
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4965
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7364
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44284
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg132Gly
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

3-133473408-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473408
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473408
    reference: chr 3
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.14G>A
  hgvsp: ENSP00000419338.1:p.Arg5Gln
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.624G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.14G>A
  hgvsp: ENSP00000264998.3:p.Arg5Gln
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000401505
  ensembl transcript: ENST00000414694
  gene symbol: TF
  hgvsc: ENST00000414694.1:c.*132G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.*24G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000242337
  ensembl transcript: ENST00000460564
  gene symbol: TFP1
  hgvsc: ENST00000460564.1:n.560G>A
  variant of: http://identifiers.org/hgnc/11759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.443G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.487G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2368G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.395G>A
  hgvsp: ENSP00000385834.3:p.Arg132Gln
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8133
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7365
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6746
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4966
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg132Gln
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum

3-133473429-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473429
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473429
    reference: chr 3
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.416C>T
  hgvsp: ENSP00000385834.3:p.Thr139Met
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.35C>T
  hgvsp: ENSP00000419338.1:p.Thr12Met
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.*45C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.645C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.508C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2347C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.35C>T
  hgvsp: ENSP00000264998.3:p.Thr12Met
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.464C>T
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8133
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6747
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4966
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2120
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3903
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2421
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44285
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr139Met
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

3-133473430-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473430
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473430
    reference: chr 3
allele count: 128
allele frequency: 1.054261522748987e-3
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.36G>A
  hgvsp: ENST00000482271.1:c.36G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.465G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2346G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.*46G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.509G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.36G>A
  hgvsp: ENST00000264998.3:c.36G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.417G>A
  hgvsp: ENST00000402696.3:c.417G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.646G>A
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7347
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3681
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 9.75e1
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 7960
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4117
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2637
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4961
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6736
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3896
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1319
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr139Thr
num of homozygotes: 1
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

3-133473432-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473432
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473432
    reference: chr 3
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.38G>A
  hgvsp: ENSP00000419338.1:p.Gly13Asp
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.648G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.419G>A
  hgvsp: ENSP00000385834.3:p.Gly140Asp
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.38G>A
  hgvsp: ENSP00000264998.3:p.Gly13Asp
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2344G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.*48G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.467G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.511G>A
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3686
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4974
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6740
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7969
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3907
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1322
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly140Asp
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

3-133473435-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473435
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473435
    reference: chr 3
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.422T>G
  hgvsp: ENSP00000385834.3:p.Leu141Arg
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.514T>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.651T>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2341T>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.*51T>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.41T>G
  hgvsp: ENSP00000419338.1:p.Leu14Arg
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.41T>G
  hgvsp: ENSP00000264998.3:p.Leu14Arg
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.470T>G
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7969
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1909
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3686
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4975
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6740
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1682
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44291
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1321
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu141Arg
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

3-133473437-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473437
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473437
    reference: chr 3
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.43G>A
  hgvsp: ENSP00000419338.1:p.Gly15Ser
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.*53G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.472G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.653G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.43G>A
  hgvsp: ENSP00000264998.3:p.Gly15Ser
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2339G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.516G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.424G>A
  hgvsp: ENSP00000385834.3:p.Gly142Ser
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4974
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7969
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3686
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6739
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1321
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44290
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2418
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly142Ser
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/3-133473439-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473439
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473439
    reference: chr 3
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.518C>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.*55C>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.474C>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.426C>A
  hgvsp: ENST00000402696.3:c.426C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.45C>A
  hgvsp: ENST00000482271.1:c.45C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2337C>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.45C>A
  hgvsp: ENST00000264998.3:c.45C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.655C>A
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6159
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7969
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6739
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3686
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4974
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7354
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2850
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly142Gly
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-133473442-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473442
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473442
    reference: chr 3
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.48G>A
  hgvsp: ENST00000264998.3:c.48G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.48G>A
  hgvsp: ENST00000482271.1:c.48G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.477G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.*58G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.521G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.429G>A
  hgvsp: ENST00000402696.3:c.429G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2334G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.658G>A
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4974
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7970
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6739
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3686
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2111
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3902
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44291
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg143Arg
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ

3-133473445-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473445
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473445
    reference: chr 3
allele count: 379
allele frequency: 3.121602477514578e-3
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.51C>T
  hgvsp: ENST00000482271.1:c.51C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.524C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.480C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.661C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2331C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.432C>T
  hgvsp: ENST00000402696.3:c.432C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.*61C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.51C>T
  hgvsp: ENST00000264998.3:c.51C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4956
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3666
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 9.75e1
  variant carriers: 332
genotype depth: GenotypeDepth
  all individuals: 6123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6707
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7946
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7317
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8079
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser144Ser
num of homozygotes: 6
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

3-133473446-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473446
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473446
    reference: chr 3
allele count: 3
allele frequency: 2.470925443942938e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.52G>A
  hgvsp: ENSP00000264998.3:p.Ala18Thr
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.433G>A
  hgvsp: ENSP00000385834.3:p.Ala145Thr
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2330G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.*62G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.52G>A
  hgvsp: ENSP00000419338.1:p.Ala18Thr
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.662G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.525G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.481G>A
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3703
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4121
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7970
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7347
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6727
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4983
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2413
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3941
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala145Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

3-133473457-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473457
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473457
    reference: chr 3
allele count: 2
allele frequency: 1.647392178181938e-5
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.63C>T
  hgvsp: ENST00000264998.3:c.63C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.444C>T
  hgvsp: ENST00000402696.3:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.63C>T
  hgvsp: ENST00000482271.1:c.63C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.536C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2319C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.492C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.*73C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.673C>T
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4118
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7346
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3703
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7968
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4982
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6727
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1677
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3941
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2849
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asn148Asn
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

3-133473479-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473479
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473479
    reference: chr 3
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.85T>G
  hgvsp: ENSP00000264998.3:p.Cys29Gly
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.558T>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.514T>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.85T>G
  hgvsp: ENSP00000419338.1:p.Cys29Gly
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.466T>G
  hgvsp: ENSP00000385834.3:p.Cys156Gly
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.*95T>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.695T>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2297T>G
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7348
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4111
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6727
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7968
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4982
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1677
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2103
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2848
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3937
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Cys156Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

3-133473495-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473495
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473495
    reference: chr 3
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2281C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.*111C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.530C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.101C>T
  hgvsp: ENSP00000419338.1:p.Pro34Leu
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.574C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.482C>T
  hgvsp: ENSP00000385834.3:p.Pro161Leu
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.711C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.101C>T
  hgvsp: ENSP00000264998.3:p.Pro34Leu
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7968
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6727
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4982
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7345
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6149
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2113
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro161Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

3-133473497-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473497
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473497
    reference: chr 3
allele count: 2
allele frequency: 1.647500741375333e-5
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.484C>T
  hgvsp: ENSP00000385834.3:p.Arg162Cys
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.103C>T
  hgvsp: ENSP00000264998.3:p.Arg35Cys
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.103C>T
  hgvsp: ENSP00000419338.1:p.Arg35Cys
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2279C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.*113C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.576C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.713C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.532C>T
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7968
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4982
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6147
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6727
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7344
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2101
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3931
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1676
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg162Cys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

3-133473498-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473498
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473498
    reference: chr 3
allele count: 3
allele frequency: 2.471251112063001e-5
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.485G>A
  hgvsp: ENSP00000385834.3:p.Arg162His
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.104G>A
  hgvsp: ENSP00000419338.1:p.Arg35His
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.104G>A
  hgvsp: ENSP00000264998.3:p.Arg35His
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000498622
  gene symbol: TF
  hgvsc: ENST00000498622.1:n.714G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.*114G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.577G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.533G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2278G>A
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6728
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6147
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4981
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2109
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3930
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2408
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1314
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg162His
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD

3-133473505-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473505
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473505
    reference: chr 3
allele count: 3
allele frequency: 2.47161759132627e-5
allele num: 121378
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.492T>C
  hgvsp: ENST00000402696.3:c.492T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.111T>C
  hgvsp: ENST00000482271.1:c.111T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.*121T>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000475382
  gene symbol: TF
  hgvsc: ENST00000475382.1:n.584T>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.111T>C
  hgvsp: ENST00000264998.3:c.111T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.540T>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2271T>C
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4981
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4097
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6729
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1310
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44276
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1676
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2848
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3918
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro164Pro
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

3-133473516-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473516
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473516
    reference: chr 3
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2260G>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.550+1G>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.121+1G>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.502+1G>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.*131+1G>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.121+1G>T
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4062
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6117
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6729
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7342
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4982
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2405
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44274
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2087
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
hgvs: c.502+1G>T
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/3-133473525-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473525
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473525
    reference: chr 3
allele count: 13
allele frequency: 1.071316730670974e-4
allele num: 121346
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.550+10C>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.*131+10C>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.121+10C>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2251C>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.121+10C>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.502+10C>A
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6078
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3993
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7333
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7963
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4980
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6727
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1300
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1673
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3746
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2400
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum

3-133473527-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473527
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473527
    reference: chr 3
allele count: 3
allele frequency: 2.472310126582278e-5
allele num: 121344
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.*131+12G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.121+12G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2249G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.550+12G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.121+12G>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.502+12G>A
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3705
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6728
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3977
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6063
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7963
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7332
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4980
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1673
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1296
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3717
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2067
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/3-133473539-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473539
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473539
    reference: chr 3
allele count: 1
allele frequency: 8.244430886935875e-6
allele num: 121294
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.550+24C>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.502+24C>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.*131+24C>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.121+24C>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2237C>A
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.121+24C>A
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6727
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3743
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4980
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5865
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8082
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7960
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1896
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3335
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1670
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2844
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

3-133473543-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473543
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473543
    reference: chr 3
allele count: 2
allele frequency: 1.649947201689546e-5
allele num: 121216
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.*131+28C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.550+28C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.121+28C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2233C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.121+28C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.502+28C>T
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3681
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8052
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4980
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7946
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5737
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6720
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1795
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2840
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1670
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

3-133473549-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473549
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473549
    reference: chr 3
allele count: 1
allele frequency: 8.252731654177533e-6
allele num: 121172
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.550+34G>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.121+34G>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.121+34G>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2227G>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.502+34G>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.*131+34G>C
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8044
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7944
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3702
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6721
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5641
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3591
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4979
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2384
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

3-133473553-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473553
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473553
    reference: chr 3
allele count: 3
allele frequency: 2.475043313257982e-5
allele num: 121210
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.121+38C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.121+38C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.*131+38C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.502+38C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.550+38C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2223C>T
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5630
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3584
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6722
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8045
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7125
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4981
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7943
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3702
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2053
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1678
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1793
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1256
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2847
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

3-133473557-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473557
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473557
    reference: chr 3
allele count: 5
allele frequency: 4.12657015994586e-5
allele num: 121166
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.121+42T>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.121+42T>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.502+42T>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.*131+42T>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.550+42T>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2219T>C
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3703
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8046
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7942
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6722
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4981
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5579
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44282
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2045
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1758
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1679
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD

3-133473561-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473561
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473561
    reference: chr 3
allele count: 74
allele frequency: 6.108836349227315e-4
allele num: 121136
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2215C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.121+46C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.*131+46C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.502+46C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.121+46C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.550+46C>G
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7936
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6718
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5533
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7110
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3398
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2654
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4979
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8038
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 8.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 7.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1677
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2039
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2395
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 1
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

3-133473561-CCAGATGCCCACA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473561
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473549
    reference: chr 3
allele count: 1
allele frequency: 8.255184255712587e-6
allele num: 121136
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4979
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6718
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7936
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5533
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7110
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3398
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8038
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2654
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1677
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2039
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2844
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2395
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: CCAGATGCCCACA
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS

http://identifiers.org/exac.variant/3-133473565-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133473565
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133473565
    reference: chr 3
allele count: 1
allele frequency: 8.257501940512956e-6
allele num: 121102
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.121+50A>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.502+50A>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.550+50A>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-2211A>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.121+50A>C
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.*131+50A>C
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7108
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8039
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6721
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4978
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5504
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7934
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3379
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2658
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1726
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2400
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1676
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2249
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2846
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

3-133474159-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133474159
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133474159
    reference: chr 3
allele count: 71
allele frequency: 5.962979137971579e-4
allele num: 119068
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.551-48T>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.122-48T>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-1617T>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.*132-48T>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.122-48T>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.503-48T>G
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 4007
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8088
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4634
  bin: 5.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5244
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5807
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7801
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6351
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5526
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2648
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3139
  bin: 7.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33212
  bin: 9.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1682
  bin: 8.75e1
  variant carriers: 6
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

3-133474166-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133474166
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133474166
    reference: chr 3
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.503-41C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.122-41C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.*132-41C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.122-41C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-1610C>T
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.551-41C>T
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4518
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6333
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3158
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2249
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3918
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5435
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5821
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8412
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5146
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9301
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2743
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1747
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP

3-133474167-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133474167
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133474167
    reference: chr 3
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.503-40C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-1609C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.122-40C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.551-40C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.*132-40C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.122-40C>G
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5823
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6333
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8411
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5435
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3918
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4518
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3158
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5146
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3310
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3023
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9322
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4395
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

3-133474173-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133474173
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 133474173
    reference: chr 3
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418716
  ensembl transcript: ENST00000485977
  gene symbol: TF
  hgvsc: ENST00000485977.1:c.158-1603C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000419338
  ensembl transcript: ENST00000482271
  gene symbol: TF
  hgvsc: ENST00000482271.1:c.122-34C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl transcript: ENST00000493011
  gene symbol: TF
  hgvsc: ENST00000493011.1:n.551-34C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000385834
  ensembl transcript: ENST00000402696
  gene symbol: TF
  hgvsc: ENST00000402696.3:c.503-34C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000264998
  ensembl transcript: ENST00000264998
  gene symbol: TF
  hgvsc: ENST00000264998.3:c.122-34C>G
  variant of: http://identifiers.org/hgnc/11740
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000091513
  ensembl protein: ENSP00000418396
  ensembl transcript: ENST00000494430
  gene symbol: TF
  hgvsc: ENST00000494430.1:c.*132-34C>G
  variant of: http://identifiers.org/hgnc/11740
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3918
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4518
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8451
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5825
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3158
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6337
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1752
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33655
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9433
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2227
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3031
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4412
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C

GenotypeDepth
all individuals: 4489
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1152
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 449
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1086
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 673
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2941
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3659
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1830
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4374
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18313
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6762
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2791
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20029
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.945e1

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.8e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-1

FS
type: SiteQuality
SIO_000300: 5.71e-1

QD
type: SiteQuality
SIO_000300: 1.192e1

DP
type: SiteQuality
SIO_000300: 2.325043e6

GenotypeDepth
all individuals: 16138
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1152
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4488
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1301
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1085
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1830
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6764
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18313
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20025
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3659
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4373
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2941
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2791
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.456e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.263e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

DP
type: SiteQuality
SIO_000300: 2.324978e6

MQRankSum
type: SiteQuality
SIO_000300: 1.5e0

VQSLOD
type: SiteQuality
SIO_000300: -6.284999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.177e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 3.353e0

GenotypeDepth
all individuals: 850
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 449
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2050
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1620
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6936
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6762
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4372
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3660
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2941
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18313
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 20000
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2791
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1830
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.850000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.786e0

VQSLOD
type: SiteQuality
SIO_000300: 1.73e-1

FS
type: SiteQuality
SIO_000300: 7.406e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

DP
type: SiteQuality
SIO_000300: 2.324868e6

QD
type: SiteQuality
SIO_000300: 9.99e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.352e0

GenotypeDepth
all individuals: 16131
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11625
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 449
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1300
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1153
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19990
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2791
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3659
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2941
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6761
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1829
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18313
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4371
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.468208092485549e-4
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.18e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.825e0

DP
type: SiteQuality
SIO_000300: 2.324909e6

MQRankSum
type: SiteQuality
SIO_000300: -7.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.399e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

FS
type: SiteQuality
SIO_000300: 1.562e0

QD
type: SiteQuality
SIO_000300: 1.269e1

GenotypeDepth
all individuals: 4487
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6937
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1620
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1300
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1829
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4370
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6761
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18312
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 19967
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2942
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2791
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3660
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211680600993578e-4
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.02e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.32e0

QD
type: SiteQuality
SIO_000300: 1.255e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.324662e6

FS
type: SiteQuality
SIO_000300: 6.8e0

VQSLOD
type: SiteQuality
SIO_000300: 8.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.59e-1

GenotypeDepth
all individuals: 850
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 673
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2052
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 978
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1086
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6761
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2942
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19978
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18311
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1829
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4370
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3661
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2791
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.41e0

QD
type: SiteQuality
SIO_000300: 1.54e1

MQRankSum
type: SiteQuality
SIO_000300: 2.19e0

VQSLOD
type: SiteQuality
SIO_000300: -7.979000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 9.923e0

DP
type: SiteQuality
SIO_000300: 2.32472e6

GenotypeDepth
all individuals: 590
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 979
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1085
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 448
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1151
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3658
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6760
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1829
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19958
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2939
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2792
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18310
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4371
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.595e0

VQSLOD
type: SiteQuality
SIO_000300: 8.44e-1

FS
type: SiteQuality
SIO_000300: 3.287e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.282e0

MQRankSum
type: SiteQuality
SIO_000300: -1.349e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

QD
type: SiteQuality
SIO_000300: 1.424e1

DP
type: SiteQuality
SIO_000300: 2.324493e6

GenotypeDepth
all individuals: 1087
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 3039
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 979
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 673
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 591
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3658
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4368
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6739
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1828
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18309
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2793
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19914
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2936
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.496537665997182e-5
allele num: 66718
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.65e0

FS
type: SiteQuality
SIO_000300: 8.57e-1

DP
type: SiteQuality
SIO_000300: 2.324116e6

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

QD
type: SiteQuality
SIO_000300: 1.396e1

GenotypeDepth
all individuals: 34
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 77
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1300
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1085
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 590
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7603
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3656
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6735
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4368
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2791
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19894
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2936
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18306
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1829
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.84e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.93e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.323562e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.05e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.296e1

GenotypeDepth
all individuals: 673
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3041
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 120
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1620
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 849
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 448
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2791
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2932
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1829
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19813
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6727
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18307
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 41
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3655
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4365
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.031037827352086e-4
allele num: 16496
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.458e0

VQSLOD
type: SiteQuality
SIO_000300: -1.5e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e0

FS
type: SiteQuality
SIO_000300: 4.784e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

DP
type: SiteQuality
SIO_000300: 2.323004e6

QD
type: SiteQuality
SIO_000300: 1.637e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.25e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.72e-1

GenotypeDepth
all individuals: 849
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11600
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3039
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 979
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19575
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3655
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4359
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6689
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2790
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2927
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18307
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1827
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500195025353296e-5
allele num: 66658
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.575e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e0

QD
type: SiteQuality
SIO_000300: 1.416e1

MQRankSum
type: SiteQuality
SIO_000300: 1.97e-1

DP
type: SiteQuality
SIO_000300: 2.319883e6

VQSLOD
type: SiteQuality
SIO_000300: 1.26e0

MQ
type: SiteQuality
SIO_000300: 6.024e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.404e0

GenotypeDepth
all individuals: 1299
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6918
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 448
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2051
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6606
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2891
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2787
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19117
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3647
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1826
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18305
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4339
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.525264394829612e-4
allele num: 8510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.826e0

DP
type: SiteQuality
SIO_000300: 2.312924e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.673e0

VQSLOD
type: SiteQuality
SIO_000300: 1.82e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e-1

QD
type: SiteQuality
SIO_000300: 1.313e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.71e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 4477
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 448
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2050
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3037
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1821
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4298
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18297
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 982
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3630
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17585
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6410
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2782
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2852
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66510
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.894076789504148e-4
allele num: 10366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.294056e6

QD
type: SiteQuality
SIO_000300: 1.287e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.23e-1

GenotypeDepth
all individuals: 1150
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2051
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 3037
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11312
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 18298
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 19
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2845
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6391
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 985
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4295
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2782
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1821
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3624
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17697
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.474031613687685e-4
allele num: 11514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66508
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.058e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.04e-1

FS
type: SiteQuality
SIO_000300: 5.926e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

DP
type: SiteQuality
SIO_000300: 2.293712e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.78e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.18e-1

QD
type: SiteQuality
SIO_000300: 1.213e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

GenotypeDepth
all individuals: 2048
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1150
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1619
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1087
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1165
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18280
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 233
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2773
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2631
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3130
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1472
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2422
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7717
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2808
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1885
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5117
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 861
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3548
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1787
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4073
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.212121212121212e-4
allele num: 8250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.201729e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.94e-1

MQ
type: SiteQuality
SIO_000300: 5.479e1

QD
type: SiteQuality
SIO_000300: 1.587e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.43e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.91e0

VQSLOD
type: SiteQuality
SIO_000300: -9.360000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.34e-1

GenotypeDepth
all individuals: 1087
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 590
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1619
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1150
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1076
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5790
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 867
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1492
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3201
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4058
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2608
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2454
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1788
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18280
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1854
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3626
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1890
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3545
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4828
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2772
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66056
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.768853034023149e-5
allele num: 11404
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.95e-1

QD
type: SiteQuality
SIO_000300: 1.69e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.82e0

DP
type: SiteQuality
SIO_000300: 2.198166e6

VQSLOD
type: SiteQuality
SIO_000300: -5.93e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.08e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.31e-1

GenotypeDepth
all individuals: 9806
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 979
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1087
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 590
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 862
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1654
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1510
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18280
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1888
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1077
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3213
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3627
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2463
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3544
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4053
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4792
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1788
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6005
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2590
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2770
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66026
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8230
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.12294881214793e-5
allele num: 16332
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.363e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.93e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.549e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -3.359e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.37e-1

DP
type: SiteQuality
SIO_000300: 2.197804e6

GenotypeQuality
all individuals: 105
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1316
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2791
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3410
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2098
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2036
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1647
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44292
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 149
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2364
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 2.568e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.94e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.229e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.011e1

DP
type: SiteQuality
SIO_000300: 2.952434e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.308e0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2400
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1324
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2101
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3648
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1674
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44326
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2053
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2825
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.578e0

MQRankSum
type: SiteQuality
SIO_000300: 1.15e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -9.520000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

DP
type: SiteQuality
SIO_000300: 2.955843e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.88e-1

QD
type: SiteQuality
SIO_000300: 1.031e1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2109
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3676
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2405
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2067
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1680
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1319
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2833
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.956e1

QD
type: SiteQuality
SIO_000300: 3.126e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.9e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

FS
type: SiteQuality
SIO_000300: 2.047e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.71e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.177e0

DP
type: SiteQuality
SIO_000300: 2.95701e6

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2117
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2845
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44344
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2424
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1690
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2077
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3726
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997961386257345e-5
allele num: 66712
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.727e0

MQRankSum
type: SiteQuality
SIO_000300: -7.8e-2

QD
type: SiteQuality
SIO_000300: 1.664e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e-1

MQ
type: SiteQuality
SIO_000300: 5.903e1

FS
type: SiteQuality
SIO_000300: 1.86e0

VQSLOD
type: SiteQuality
SIO_000300: 6.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.19e-1

DP
type: SiteQuality
SIO_000300: 2.957919e6

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2118
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1322
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2424
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1692
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44345
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3738
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2850
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.878e0

DP
type: SiteQuality
SIO_000300: 2.958361e6

MQRankSum
type: SiteQuality
SIO_000300: -7.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.77e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

QD
type: SiteQuality
SIO_000300: 1.123e1

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2426
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2119
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1691
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1324
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3745
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2081
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44346
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2852
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.635e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.72e-1

QD
type: SiteQuality
SIO_000300: 1.173e1

MQ
type: SiteQuality
SIO_000300: 5.942e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.898e0

DP
type: SiteQuality
SIO_000300: 2.958598e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

GenotypeQuality
all individuals: 1695
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44345
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3755
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1328
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2126
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2429
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2089
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.02e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.61e-1

FS
type: SiteQuality
SIO_000300: 5.954e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.689e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.7e-1

DP
type: SiteQuality
SIO_000300: 2.958964e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.368e1

GenotypeQuality
all individuals: 3752
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2128
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2089
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44345
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1329
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2857
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2432
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.521e0

FS
type: SiteQuality
SIO_000300: 3.769e0

VQSLOD
type: SiteQuality
SIO_000300: 5.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.173e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.92e-1

MQ
type: SiteQuality
SIO_000300: 5.93e1

DP
type: SiteQuality
SIO_000300: 2.959164e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.24e-1

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2844
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2426
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1322
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2076
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3753
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1690
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2114
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 318
allele frequency: 3.055929271574092e-2
allele num: 10406
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.493330935467435e-5
allele num: 66726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.207505518763797e-3
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 21
allele frequency: 1.813784764207981e-3
allele num: 11578
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.78e-1

FS
type: SiteQuality
SIO_000300: 7.81e-1

QD
type: SiteQuality
SIO_000300: 1.581e1

DP
type: SiteQuality
SIO_000300: 2.969493e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.999999999999999e-3

MQ
type: SiteQuality
SIO_000300: 5.975e1

VQSLOD
type: SiteQuality
SIO_000300: 4.17e0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3797
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44339
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2852
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2428
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1695
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2125
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1328
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2089
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.409e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.08e-1

QD
type: SiteQuality
SIO_000300: 1.256e1

FS
type: SiteQuality
SIO_000300: 1.083e0

DP
type: SiteQuality
SIO_000300: 2.963492e6

MQ
type: SiteQuality
SIO_000300: 5.901e1

GenotypeQuality
all individuals: 3802
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2090
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2851
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1695
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2122
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2427
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44346
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1328
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.24799928064023e-4
allele num: 66726
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 2.964067e6

VQSLOD
type: SiteQuality
SIO_000300: 3.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.25e-1

MQ
type: SiteQuality
SIO_000300: 5.933e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.34e0

QD
type: SiteQuality
SIO_000300: 1.805e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.91e-1

GenotypeQuality
all individuals: 44346
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 2851
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1328
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2091
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3800
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1695
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2429
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.247931902649562e-4
allele num: 66728
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.449e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.9e-1

MQ
type: SiteQuality
SIO_000300: 5.934e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.787e1

MQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

DP
type: SiteQuality
SIO_000300: 2.964151e6

VQSLOD
type: SiteQuality
SIO_000300: 2.26e0

GenotypeQuality
all individuals: 1697
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2431
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2130
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2093
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44353
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2851
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3822
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1323
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 7.68787238131847e-4
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.25e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.23e-1

MQ
type: SiteQuality
SIO_000300: 5.989e1

DP
type: SiteQuality
SIO_000300: 2.96507e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.76e-1

QD
type: SiteQuality
SIO_000300: 1.358e1

GenotypeQuality
all individuals: 2086
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2838
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44415
bin: 9.75e1
variant carriers: 240

GenotypeQuality
all individuals: 1320
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2418
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3810
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1688
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2125
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 200
allele frequency: 2.996793431028799e-3
allele num: 66738
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.056201550387597e-4
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.843936190659235e-4
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 20
allele frequency: 1.727414061150458e-3
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.303964757709251e-3
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.980774e6

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.481e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

FS
type: SiteQuality
SIO_000300: 6.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.14e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

VQSLOD
type: SiteQuality
SIO_000300: 4.08e0

QD
type: SiteQuality
SIO_000300: 1.371e1

GenotypeQuality
all individuals: 2126
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2841
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3823
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2090
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2420
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1690
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44389
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 5.47e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

QD
type: SiteQuality
SIO_000300: 1.486e1

DP
type: SiteQuality
SIO_000300: 2.969929e6

VQSLOD
type: SiteQuality
SIO_000300: 1.26e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

FS
type: SiteQuality
SIO_000300: 4.181e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.57e-1

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2841
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2090
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3825
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2420
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44390
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1690
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1322
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2123
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.938e0

VQSLOD
type: SiteQuality
SIO_000300: -2.615e0

FS
type: SiteQuality
SIO_000300: 1.4779e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.390000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.924e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.95e0

DP
type: SiteQuality
SIO_000300: 2.970179e6

MQRankSum
type: SiteQuality
SIO_000300: -3.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.732e0

GenotypeQuality
all individuals: 3833
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2090
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1321
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44384
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2119
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2844
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1691
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2419
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 4.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.654e0

DP
type: SiteQuality
SIO_000300: 2.971855e6

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.75e0

MQ
type: SiteQuality
SIO_000300: 5.992e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.47e0

QD
type: SiteQuality
SIO_000300: 1.461e1

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 5

GenotypeQuality
all individuals: 40
bin: 2.75e1
variant carriers: 6

GenotypeQuality
all individuals: 2394
bin: 8.25e1
variant carriers: 6

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 5

GenotypeQuality
all individuals: 51
bin: 3.25e1
variant carriers: 10

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 37
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 2055
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 5

GenotypeQuality
all individuals: 2810
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 43749
bin: 9.75e1
variant carriers: 81

GenotypeQuality
all individuals: 43
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3788
bin: 6.25e1
variant carriers: 8

GenotypeQuality
all individuals: 1674
bin: 8.75e1
variant carriers: 8

GenotypeQuality
all individuals: 57
bin: 5.25e1
variant carriers: 7

GenotypeQuality
all individuals: 2082
bin: 7.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1303
bin: 7.25e1
variant carriers: 5

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 83
allele frequency: 1.252452089935114e-3
allele num: 66270
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 7.793557325943886e-4
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.370786516853933e-3
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 1.167088115152694e-3
allele num: 10282
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.805852299117511e-4
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 53
allele frequency: 8.312421580928481e-3
allele num: 6376
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.518899999999999e1

DP
type: SiteQuality
SIO_000300: 3.024084e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.86e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.12e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.872e1

QD
type: SiteQuality
SIO_000300: 9.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.473e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.644e0

GenotypeQuality
all individuals: 3899
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1687
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1321
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2420
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44284
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2123
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2113
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2855
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.771e0

MQRankSum
type: SiteQuality
SIO_000300: 4.87e-1

FS
type: SiteQuality
SIO_000300: 4.394e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.185e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.1e-2

MQ
type: SiteQuality
SIO_000300: 5.92e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.72e-1

DP
type: SiteQuality
SIO_000300: 2.973972e6

GenotypeQuality
all individuals: 1319
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3903
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2420
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44284
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2855
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1687
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2123
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2112
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.528e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -9.013e-1

FS
type: SiteQuality
SIO_000300: 1.0176e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

MQRankSum
type: SiteQuality
SIO_000300: -3.1e-2

MQ
type: SiteQuality
SIO_000300: 5.94e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.25e-1

DP
type: SiteQuality
SIO_000300: 2.973996e6

QD
type: SiteQuality
SIO_000300: 1.408e1

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3900
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1322
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2112
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1687
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2420
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2121
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2855
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.454e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

VQSLOD
type: SiteQuality
SIO_000300: 8.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.61e-1

DP
type: SiteQuality
SIO_000300: 2.974068e6

MQRankSum
type: SiteQuality
SIO_000300: 8.78e-1

QD
type: SiteQuality
SIO_000300: 8.369999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

GenotypeQuality
all individuals: 3901
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2420
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2855
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2121
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1687
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2112
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1322
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44284
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.798e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.91e0

FS
type: SiteQuality
SIO_000300: 1.137e0

QD
type: SiteQuality
SIO_000300: 1.439e1

DP
type: SiteQuality
SIO_000300: 2.974126e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.599999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.984e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.47e0

MQRankSum
type: SiteQuality
SIO_000300: 1.44e0

GenotypeQuality
all individuals: 2856
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1687
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2112
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.415e0

VQSLOD
type: SiteQuality
SIO_000300: 1.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

FS
type: SiteQuality
SIO_000300: 3.316e0

QD
type: SiteQuality
SIO_000300: 9.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.9e0

DP
type: SiteQuality
SIO_000300: 2.97401e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44318
bin: 9.75e1
variant carriers: 127

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2849
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2108
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1680
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2418
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2117
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 122
allele frequency: 1.172400538151067e-2
allele num: 10406
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.591121091725686e-4
allele num: 11578
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.46e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

DP
type: SiteQuality
SIO_000300: 2.994053e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.97e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.72e-2

FS
type: SiteQuality
SIO_000300: 5.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.55e0

QD
type: SiteQuality
SIO_000300: 1.331e1

MQRankSum
type: SiteQuality
SIO_000300: 2.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.56e-1

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2850
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2418
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2121
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1682
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2113
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44291
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.214e1

DP
type: SiteQuality
SIO_000300: 2.976209e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.593e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e-1

FS
type: SiteQuality
SIO_000300: 4.626e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
all individuals: 2113
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2850
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2121
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3909
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2418
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.967e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.83e0

MQRankSum
type: SiteQuality
SIO_000300: -1.152e0

QD
type: SiteQuality
SIO_000300: 1.526e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.05e-1

DP
type: SiteQuality
SIO_000300: 2.976158e6

GenotypeQuality
all individuals: 1682
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2112
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2851
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3907
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2122
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.334e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

MQRankSum
type: SiteQuality
SIO_000300: -3.4e-1

DP
type: SiteQuality
SIO_000300: 2.976155e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.11e0

QD
type: SiteQuality
SIO_000300: 1.335e1

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3907
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2418
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2121
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1321
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44291
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1682
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2111
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.21e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

FS
type: SiteQuality
SIO_000300: 1.063e0

MQRankSum
type: SiteQuality
SIO_000300: 4.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.9762e6

QD
type: SiteQuality
SIO_000300: 9.83e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.378e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e0

GenotypeQuality
all individuals: 2850
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2418
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1682
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1321
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2121
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.39e-1

FS
type: SiteQuality
SIO_000300: 5.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

VQSLOD
type: SiteQuality
SIO_000300: -9.48e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

DP
type: SiteQuality
SIO_000300: 2.976218e6

QD
type: SiteQuality
SIO_000300: 1.393e1

MQ
type: SiteQuality
SIO_000300: 5.97e1

GenotypeQuality
all individuals: 2100
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3891
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2401
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44389
bin: 9.75e1
variant carriers: 373

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1316
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2832
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1670
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2102
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.993407252022775e-5
allele num: 66740
num of homozygotes: 0

African
type: Population
allele count: 357
allele frequency: 3.430713050163367e-2
allele num: 10406
num of homozygotes: 6

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.466605038132656e-4
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 1.036448436690275e-3
allele num: 11578
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.974e1

QD
type: SiteQuality
SIO_000300: 1.271e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e0

MQRankSum
type: SiteQuality
SIO_000300: 4.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.62e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.15e-1

DP
type: SiteQuality
SIO_000300: 3.033751e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

GenotypeQuality
all individuals: 44275
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2107
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1321
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2119
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2849
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1677
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.46e-1

DP
type: SiteQuality
SIO_000300: 2.978283e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.69e-1

FS
type: SiteQuality
SIO_000300: 5.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

MQ
type: SiteQuality
SIO_000300: 5.984e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-1

QD
type: SiteQuality
SIO_000300: 1.228e1

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1319
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2104
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2121
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2410
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44274
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.401999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.978403e6

MQRankSum
type: SiteQuality
SIO_000300: 1.56e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.59e0

VQSLOD
type: SiteQuality
SIO_000300: -1.006e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

QD
type: SiteQuality
SIO_000300: 1.165e1

GenotypeQuality
all individuals: 1317
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2409
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44275
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2120
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.425e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.602e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.481e0

DP
type: SiteQuality
SIO_000300: 2.978088e6

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

VQSLOD
type: SiteQuality
SIO_000300: -6.163e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.167e1

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2410
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3935
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1676
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2848
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2101
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44275
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1315
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.977779e6

VQSLOD
type: SiteQuality
SIO_000300: 7.74e-1

FS
type: SiteQuality
SIO_000300: 3.418e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.38e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.87e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.083e1

GenotypeQuality
all individuals: 1315
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2111
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2848
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2409
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44275
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997152704930316e-5
allele num: 66730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.729e0

FS
type: SiteQuality
SIO_000300: 1.3542e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.99e-1

QD
type: SiteQuality
SIO_000300: 1.393e1

MQRankSum
type: SiteQuality
SIO_000300: 7.48e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.23e0

DP
type: SiteQuality
SIO_000300: 2.977853e6

GenotypeQuality
all individuals: 2848
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2101
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44275
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1676
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495729057395475e-5
allele num: 66730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.155e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

MQRankSum
type: SiteQuality
SIO_000300: -1.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.697e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.79e-1

DP
type: SiteQuality
SIO_000300: 2.978118e6

QD
type: SiteQuality
SIO_000300: 1.3e1

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2103
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2407
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2101
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 2.884615384615385e-4
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 6.42e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.14e0

DP
type: SiteQuality
SIO_000300: 2.977519e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.59e-1

QD
type: SiteQuality
SIO_000300: 1.417e1

GenotypeQuality
all individuals: 2098
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1308
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3856
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1675
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2847
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499250374812594e-5
allele num: 66700
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.976245e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.51e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.99e-1

QD
type: SiteQuality
SIO_000300: 1.263e1

MQRankSum
type: SiteQuality
SIO_000300: 5.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.02e-1

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2846
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44276
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 69
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2072
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2090
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 13
allele frequency: 1.502195516524151e-3
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.327e1

VQSLOD
type: SiteQuality
SIO_000300: 3.35e0

DP
type: SiteQuality
SIO_000300: 2.975242e6

MQ
type: SiteQuality
SIO_000300: 5.977e1

FS
type: SiteQuality
SIO_000300: 8.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.54e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.7e0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2847
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44276
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2089
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2398
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.49829064955317e-5
allele num: 66692
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.41e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.85e0

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.8e-1

QD
type: SiteQuality
SIO_000300: 1.497e1

FS
type: SiteQuality
SIO_000300: 5.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 2.974055e6

GenotypeQuality
all individuals: 2386
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2054
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44274
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 61
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66664
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.964745e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.91e-1

FS
type: SiteQuality
SIO_000300: 9.842000000000001e0

QD
type: SiteQuality
SIO_000300: 1.271e1

VQSLOD
type: SiteQuality
SIO_000300: -6.204e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.66e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -7.073e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeQuality
all individuals: 2904
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2386
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1246
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2046
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44273
bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.861e0

DP
type: SiteQuality
SIO_000300: 2.958854e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.26e0

QD
type: SiteQuality
SIO_000300: 1.163e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.25e-1

GenotypeQuality
all individuals: 1238
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2036
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2575
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1748
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1672
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2837
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44266
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66600
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.52e-1

FS
type: SiteQuality
SIO_000300: 3.532e0

MQRankSum
type: SiteQuality
SIO_000300: -3.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: 8.76e-1

QD
type: SiteQuality
SIO_000300: 1.165e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.961e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

DP
type: SiteQuality
SIO_000300: 2.955264e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.48e-1

GenotypeQuality
all individuals: 225
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44281
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2398
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2795
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.904162633107454e-4
allele num: 10330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.954982e6

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e0

QD
type: SiteQuality
SIO_000300: 1.419e1

MQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 1.707e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.665e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.293e0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2398
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1249
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2846
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2542
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.592912705272256e-4
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66600
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -8.112e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.207e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.79e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.31e-1

FS
type: SiteQuality
SIO_000300: 1.1103e1

MQRankSum
type: SiteQuality
SIO_000300: 2.93e-1

DP
type: SiteQuality
SIO_000300: 2.953135e6

QD
type: SiteQuality
SIO_000300: 1.25e1

GenotypeQuality
all individuals: 233
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44294
bin: 9.75e1
variant carriers: 73

GenotypeQuality
all individuals: 2456
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1744
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2844
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 25
allele frequency: 3.754430227668649e-4
allele num: 66588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 6.914433880726015e-4
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 40
allele frequency: 2.422480620155039e-3
allele num: 16512
num of homozygotes: 1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.03e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQRankSum
type: SiteQuality
SIO_000300: 1.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.13e-1

DP
type: SiteQuality
SIO_000300: 2.954239e6

QD
type: SiteQuality
SIO_000300: 1.591e1

MQ
type: SiteQuality
SIO_000300: 5.978e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.19e0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1744
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44294
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2456
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66588
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.978e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.954239e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

VQSLOD
type: SiteQuality
SIO_000300: 5.19e0

QD
type: SiteQuality
SIO_000300: 1.591e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.03e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.86e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44291
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 382
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2042
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501817198810561e-5
allele num: 66586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.915e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.64e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

QD
type: SiteQuality
SIO_000300: 1.178e1

VQSLOD
type: SiteQuality
SIO_000300: 3.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-2

DP
type: SiteQuality
SIO_000300: 2.953311e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.42e0

GenotypeQuality
all individuals: 159
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 140
bin: 2.25e1
variant carriers: 3

GenotypeQuality
all individuals: 2881
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 886
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2094
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 255
bin: 4.75e1
variant carriers: 5

GenotypeQuality
all individuals: 4081
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 8415
bin: 6.25e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 45
allele frequency: 6.880313130695371e-4
allele num: 65404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 13
allele frequency: 2.100840336134454e-3
allele num: 6188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 1.204093919325707e-3
allele num: 9966
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.149425287356322e-3
allele num: 870
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.189e0

MQRankSum
type: SiteQuality
SIO_000300: -6.76e-1

DP
type: SiteQuality
SIO_000300: 2.903834e6

MQ
type: SiteQuality
SIO_000300: 5.766e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

FS
type: SiteQuality
SIO_000300: 5.5546e1

VQSLOD
type: SiteQuality
SIO_000300: -1.83e1

QD
type: SiteQuality
SIO_000300: 1.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.187e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.59e0

GenotypeQuality
all individuals: 3310
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2217
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4384
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3023
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33647
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.32e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

MQRankSum
type: SiteQuality
SIO_000300: 4.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.12e0

FS
type: SiteQuality
SIO_000300: 6.633e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

QD
type: SiteQuality
SIO_000300: 1.191e1

VQSLOD
type: SiteQuality
SIO_000300: 4.34e-1

DP
type: SiteQuality
SIO_000300: 2.880478e6

GenotypeQuality
all individuals: 33
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2744
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33646
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2220
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1751
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.566e0

QD
type: SiteQuality
SIO_000300: 1.234e1

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

VQSLOD
type: SiteQuality
SIO_000300: 5.47e-1

MQ
type: SiteQuality
SIO_000300: 5.937e1

DP
type: SiteQuality
SIO_000300: 2.880622e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

FS
type: SiteQuality
SIO_000300: 3.863e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.22e-1

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3331
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2744
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0