3-25216040-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25216040
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25216040
    reference: chr 3
allele count: 2
allele frequency: 1.775820429038216e-5
allele num: 112624
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.152G>C
  hgvsp: ENSP00000373282.4:p.Ser51Thr
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.152G>C
  hgvsp: ENSP00000385865.1:p.Ser51Thr
  variant of: http://identifiers.org/hgnc/9865
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2130
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser51Thr
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6578
  num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP

3-25216047-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25216047
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25216047
    reference: chr 3
allele count: 1
allele frequency: 8.887940841865756e-6
allele num: 112512
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.159C>T
  hgvsp: ENST00000383772.4:c.159C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.159C>T
  hgvsp: ENST00000404969.1:c.159C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9865
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 9546
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Cys53Cys
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11328
  num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

3-25216052-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25216052
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25216052
    reference: chr 3
allele count: 1
allele frequency: 8.899172376968941e-6
allele num: 112370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.164C>T
  hgvsp: ENSP00000385865.1:p.Thr55Ile
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.164C>T
  hgvsp: ENSP00000373282.4:p.Thr55Ile
  variant of: http://identifiers.org/hgnc/9865
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 53
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 422
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hgvs: p.Thr55Ile
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16198
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

3-25216053-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25216053
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25216053
    reference: chr 3
allele count: 4
allele frequency: 3.55998576005696e-5
allele num: 112360
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.165C>G
  hgvsp: ENST00000404969.1:c.165C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.165C>G
  hgvsp: ENST00000383772.4:c.165C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9865
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 38106
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr55Thr
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 61164
  num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ

3-25216056-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25216056
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25216056
    reference: chr 3
allele count: 2
allele frequency: 1.782181746894548e-5
allele num: 112222
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.168G>A
  hgvsp: ENST00000404969.1:c.168G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.168G>A
  hgvsp: ENST00000383772.4:c.168G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9865
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11182
  bin: 2.25e1
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genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
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genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11605
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2147
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9363
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2078
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1895
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro56Pro
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6562
  num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

3-25216057-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25216057
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25216057
    reference: chr 3
allele count: 2
allele frequency: 1.782626521917393e-5
allele num: 112194
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.169T>A
  hgvsp: ENSP00000373282.4:p.Ser57Thr
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.169T>A
  hgvsp: ENSP00000385865.1:p.Ser57Thr
  variant of: http://identifiers.org/hgnc/9865
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28397
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 288
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 125
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2143
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2078
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser57Thr
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11288
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-25216058-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25216058
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25216058
    reference: chr 3
allele count: 3
allele frequency: 2.674988854213107e-5
allele num: 112150
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.170C>T
  hgvsp: ENSP00000385865.1:p.Ser57Leu
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.170C>T
  hgvsp: ENSP00000373282.4:p.Ser57Leu
  variant of: http://identifiers.org/hgnc/9865
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 646
  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1018
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser57Leu
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.63816263678658e-5
  allele num: 61044
  num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

3-25216059-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25216059
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25216059
    reference: chr 3
allele count: 1
allele frequency: 8.922516863556873e-6
allele num: 112076
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.171G>A
  hgvsp: ENST00000383772.4:c.171G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.171G>A
  hgvsp: ENST00000404969.1:c.171G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9865
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11231
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 28351
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 11446
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 1875
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genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 9315
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 88
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser57Ser
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 832
  num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

3-25216062-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25216062
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25216062
    reference: chr 3
allele count: 3
allele frequency: 2.681588215313656e-5
allele num: 111874
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.174G>A
  hgvsp: ENST00000404969.1:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.174G>A
  hgvsp: ENST00000383772.4:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9865
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11254
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro58Pro
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6550
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

3-25216076-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25216076
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25216076
    reference: chr 3
allele count: 1
allele frequency: 9.067498458525262e-6
allele num: 110284
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.178+10G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.178+10G>A
  variant of: http://identifiers.org/hgnc/9865
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6486
  num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

3-25216085-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25216085
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25216085
    reference: chr 3
allele count: 1
allele frequency: 9.11892907296967e-6
allele num: 109662
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.178+19T>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.178+19T>G
  variant of: http://identifiers.org/hgnc/9865
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.67768345468577e-5
  allele num: 59606
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

3-25216086-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25216086
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25216086
    reference: chr 3
allele count: 3
allele frequency: 2.738275616568393e-5
allele num: 109558
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.178+20G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.178+20G>A
  variant of: http://identifiers.org/hgnc/9865
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 814
  num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

3-25216086-GCT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25216086
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25216084
    reference: chr 3
allele count: 5
allele frequency: 4.563792694280655e-5
allele num: 109558
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.178+25_178+26delCT
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.178+25_178+26delCT
  variant of: http://identifiers.org/hgnc/9865
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22664
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6462
  num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: GCT
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ

http://identifiers.org/exac.variant/3-25216089-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25216089
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25216089
    reference: chr 3
allele count: 1
allele frequency: 9.145951087453585e-6
allele num: 109338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.178+23C>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.178+23C>A
  variant of: http://identifiers.org/hgnc/9865
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7942
  num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
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site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
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site quality: DP
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3-25216091-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25216091
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25216091
    reference: chr 3
allele count: 3
allele frequency: 2.746146241441177e-5
allele num: 109244
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.178+25C>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.178+25C>T
  variant of: http://identifiers.org/hgnc/9865
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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num of homozygotes: 0
population: Other
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  allele frequency: 0.0e0
  allele num: 814
  num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

3-25216095-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25216095
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25216095
    reference: chr 3
allele count: 1
allele frequency: 9.173133725943457e-6
allele num: 109014
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.178+29T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.178+29T>C
  variant of: http://identifiers.org/hgnc/9865
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10900
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

3-25216096-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25216096
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25216096
    reference: chr 3
allele count: 5
allele frequency: 4.593392863704847e-5
allele num: 108852
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.178+30C>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.178+30C>T
  variant of: http://identifiers.org/hgnc/9865
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
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genotype depth: GenotypeDepth
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num of homozygotes: 0
population: African
  type: Population
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  allele num: 7858
  num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

3-25216102-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25216102
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25216102
    reference: chr 3
allele count: 1
allele frequency: 9.249838127832764e-6
allele num: 108110
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.178+36G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.178+36G>A
  variant of: http://identifiers.org/hgnc/9865
canonical: false
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 13578
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12930
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8505
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5731
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17986
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2127
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1774
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1057
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2009
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3833
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7487
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6714
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3646
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7798
  num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

3-25216111-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25216111
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25216111
    reference: chr 3
allele count: 3
allele frequency: 2.825231198086377e-5
allele num: 106186
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.178+45A>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.178+45A>T
  variant of: http://identifiers.org/hgnc/9865
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2740
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12025
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16526
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11779
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7301
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3652
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7500
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6746
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8772
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2632
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2923
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1773
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 7455
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5641
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4056
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 15580
  num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/3-25470176-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470176
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470176
    reference: chr 3
allele count: 1
allele frequency: 8.411843876177658e-6
allele num: 118880
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+154C>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.-47C>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32508C>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32508C>A
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4723
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17649
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4734
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2102
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 682
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genotype quality: GenotypeQuality
  all individuals: 763
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
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genotype quality: GenotypeQuality
  all individuals: 1204
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
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genotype quality: GenotypeQuality
  all individuals: 37347
  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 504
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 96
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genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3091
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: Latino
reference allele: C
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-25470184-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470184
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470184
    reference: chr 3
allele count: 214
allele frequency: 1.796055392362568e-3
allele num: 119150
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32500G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.-39G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+162G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32500G>A
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24095
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1975
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  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17658
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 5289
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 9.75e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2101
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1204
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2088
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 3104
  bin: 9.75e1
  variant carriers: 214
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 2.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8930
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37946
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP

3-25470190-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470190
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470190
    reference: chr 3
allele count: 1
allele frequency: 8.380122349786308e-6
allele num: 119330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32494G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.-33G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32494G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+168G>A
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5788
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4745
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2109
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2095
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1113
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2900
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38540
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8980
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP

3-25470204-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470204
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470204
    reference: chr 3
allele count: 1
allele frequency: 8.334861391255063e-6
allele num: 119978
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32480A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.-19A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.13A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+182A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32480A>G
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17796
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6902
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24556
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39896
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2131
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2109
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD

3-25470204-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470204
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470204
    reference: chr 3
allele count: 1
allele frequency: 8.334861391255063e-6
allele num: 119978
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32480A>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32480A>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.13A>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.-19A>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+182A>T
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17796
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6902
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24556
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2131
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2900
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2109
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9080
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

3-25470209-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470209
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470209
    reference: chr 3
allele count: 1
allele frequency: 8.319744417451495e-6
allele num: 120196
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+187G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.18G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32475G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.3G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.3G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.-14G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.3G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32475G>A
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4745
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17814
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24708
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2134
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP

3-25470214-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470214
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470214
    reference: chr 3
allele count: 1
allele frequency: 8.297240337863626e-6
allele num: 120522
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.8A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.-9A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32470A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+192A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.23A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.8A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32470A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.8A>G
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24892
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7409
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17851
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40754
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1219
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD

3-25470233-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470233
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470233
    reference: chr 3
allele count: 1
allele frequency: 8.256683785524381e-6
allele num: 121114
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.27G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.27G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+211G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32451G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.27G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.42G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.11G>A
  hgvsp: ENSP00000332296.4:p.Cys4Tyr
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32451G>A
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7754
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17923
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25255
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9209
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41567
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Cys4Tyr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS

3-25470235-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470235
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470235
    reference: chr 3
allele count: 1
allele frequency: 8.254366559910193e-6
allele num: 121148
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.29A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.44A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32449A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.29A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32449A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.29A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.13A>G
  hgvsp: ENSP00000332296.4:p.Met5Val
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+213A>G
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7772
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17923
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25281
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2898
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2121
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Met5Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum

3-25470240-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470240
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470240
    reference: chr 3
allele count: 1
allele frequency: 8.250280509537325e-6
allele num: 121208
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32444T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+218T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.18T>C
  hgvsp: ENST00000330688.4:c.18T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.34T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.34T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.34T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32444T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.49T>C
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2142
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41699
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9228
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp6Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

3-25470249-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470249
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470249
    reference: chr 3
allele count: 1
allele frequency: 8.243751236562685e-6
allele num: 121304
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32435A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.43A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.43A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32435A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.27A>G
  hgvsp: ENST00000330688.4:c.27A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.43A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+227A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.58A>G
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17956
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7776
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25391
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9239
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2116
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser9Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

3-25470262-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470262
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470262
    reference: chr 3
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.56C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+240C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32422C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32422C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.56C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.40C>G
  hgvsp: ENSP00000332296.4:p.Gln14Glu
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.71C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.56C>G
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25442
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7759
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4756
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2895
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln14Glu
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum

3-25470268-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470268
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470268
    reference: chr 3
allele count: 3
allele frequency: 2.471699045924168e-5
allele num: 121374
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32416C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.77C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32416C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.62C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.62C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.46C>G
  hgvsp: ENSP00000332296.4:p.Leu16Val
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.62C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+246C>G
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25449
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7768
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17959
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9241
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41874
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2896
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Leu16Val
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD

3-25470271-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470271
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470271
    reference: chr 3
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.80G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.65G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+249G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32413G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32413G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.65G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.49G>A
  hgvsp: ENSP00000332296.4:p.Asp17Asn
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.65G>A
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7769
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2893
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9239
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp17Asn
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/3-25470280-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470280
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470280
    reference: chr 3
allele count: 4
allele frequency: 3.295218637756615e-5
allele num: 121388
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.58A>C
  hgvsp: ENSP00000332296.4:p.Thr20Pro
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.74A>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.74A>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+258A>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32404A>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.89A>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.74A>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32404A>C
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25455
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4754
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17960
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7773
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41884
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr20Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-25470284-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470284
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470284
    reference: chr 3
allele count: 2
allele frequency: 1.647609318878308e-5
allele num: 121388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32400C>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+262C>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.93C>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.78C>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.62C>T
  hgvsp: ENSP00000332296.4:p.Ala21Val
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.78C>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.78C>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32400C>T
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17963
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7773
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9241
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala21Val
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

3-25470285-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470285
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470285
    reference: chr 3
allele count: 5
allele frequency: 4.119023297195769e-5
allele num: 121388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.79G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+263G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32399G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.79G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32399G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.79G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.63G>A
  hgvsp: ENST00000330688.4:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.94G>A
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7774
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17963
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4753
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2889
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9242
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala21Ala
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS

3-25470291-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470291
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470291
    reference: chr 3
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32393G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.85G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.85G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32393G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+269G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.69G>A
  hgvsp: ENST00000330688.4:c.69G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.100G>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.85G>A
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17963
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25459
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2134
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2118
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41895
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro23Pro
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

3-25470294-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470294
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470294
    reference: chr 3
allele count: 3
allele frequency: 2.47133254250692e-5
allele num: 121392
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.72T>C
  hgvsp: ENST00000330688.4:c.72T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+272T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.88T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32390T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.88T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.103T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32390T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.88T>C
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4754
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25460
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2118
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser24Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
reference allele: T
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

3-25470298-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470298
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470298
    reference: chr 3
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.92T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32386T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.107T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.76T>C
  hgvsp: ENSP00000332296.4:p.Cys26Arg
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.92T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+276T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32386T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.92T>C
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4754
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17961
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2117
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Cys26Arg
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum

3-25470302-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470302
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470302
    reference: chr 3
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.96T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.96T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.80T>C
  hgvsp: ENSP00000332296.4:p.Met27Thr
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+280T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32382T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.111T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.96T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32382T>C
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25469
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17961
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7779
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2117
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2879
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Met27Thr
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP

3-25470317-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470317
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470317
    reference: chr 3
allele count: 2
allele frequency: 1.647446457990115e-5
allele num: 121400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.111C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32367C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32367C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.95C>G
  hgvsp: ENSP00000332296.4:p.Ala32Gly
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.111C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+295C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.111C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.126C>G
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2133
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala32Gly
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD

3-25470327-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470327
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470327
    reference: chr 3
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+305A>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32357A>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.121A>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.121A>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.105A>T
  hgvsp: ENST00000330688.4:c.105A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.136A>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.121A>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32357A>T
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17960
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7779
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25460
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala35Ala
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD

3-25470340-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470340
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470340
    reference: chr 3
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.134T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.134T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+318T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.118T>C
  hgvsp: ENST00000330688.4:c.118T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.149T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32344T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.134T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32344T>C
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7763
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4745
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41893
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu40Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/3-25470351-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470351
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470351
    reference: chr 3
allele count: 6
allele frequency: 4.945109286915241e-5
allele num: 121332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.145C>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.145C>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.160C>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.129C>A
  hgvsp: ENST00000330688.4:c.129C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.145C>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+329C>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32333C>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32333C>A
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17933
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41840
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr43Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-25470351-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470351
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470351
    reference: chr 3
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32333C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.145C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.145C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.129C>G
  hgvsp: ENST00000330688.4:c.129C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32333C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.160C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.145C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+329C>G
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17933
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41840
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr43Thr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

3-25470357-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470357
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470357
    reference: chr 3
allele count: 1
allele frequency: 8.245790523937529e-6
allele num: 121274
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.151G>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+335G>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.166G>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.135G>C
  hgvsp: ENSP00000332296.4:p.Trp45Cys
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32327G>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.151G>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32327G>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.151G>C
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25469
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4739
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7633
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17916
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9197
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2106
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Trp45Cys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP

3-25470378-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470378
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470378
    reference: chr 3
allele count: 1
allele frequency: 8.369741709770836e-6
allele num: 119478
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.172A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.187A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.156A>G
  hgvsp: ENST00000330688.4:c.156A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.172A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32306A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.172A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32306A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+356A>G
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16059
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3994
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24237
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3268
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37548
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
hgvs: c.156A>G
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

3-25470388-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470388
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470387
    reference: chr 3
allele count: 1
allele frequency: 8.468691248454463e-6
allele num: 118082
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.173+16delT
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32289delT
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.173+16delT
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.188+16delT
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.173+16delT
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+373delT
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32289delT
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.157+16delT
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21967
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5591
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14057
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6418
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1769
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1091
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33168
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7451
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: AT
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff

3-25470397-CCTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470397
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470394
    reference: chr 3
allele count: 7
allele frequency: 6.038022288927992e-5
allele num: 115932
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+381_-180+383delTCT
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.173+24_173+26delTCT
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.173+24_173+26delTCT
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.157+24_157+26delTCT
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.173+24_173+26delTCT
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.188+24_188+26delTCT
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32281_179-32279delTCT
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32281_179-32279delTCT
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15691
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2967
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6377
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8755
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4475
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1611
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3147
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: CCTT
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

3-25470398-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470398
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470398
    reference: chr 3
allele count: 1
allele frequency: 8.634087376964255e-6
allele num: 115820
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.173+19C>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.173+19C>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.188+19C>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.173+19C>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32286C>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+376C>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.157+19C>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32286C>T
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2951
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8730
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15737
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6419
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1599
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3452
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2759
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4755
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

3-25470402-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470402
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470402
    reference: chr 3
allele count: 3
allele frequency: 2.606565068552661e-5
allele num: 115094
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.157+23T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32282T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+380T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.173+23T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32282T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.173+23T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.173+23T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.188+23T>C
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11828
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10287
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7558
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8034
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2685
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13159
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2759
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4324
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1554
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1541
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

3-25470406-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470406
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470406
    reference: chr 3
allele count: 1
allele frequency: 8.826281134706703e-6
allele num: 113298
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32278A>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.173+27A>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.173+27A>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.188+27A>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.157+27A>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+384A>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.173+27A>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32278A>T
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8245
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12395
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2968
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10866
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6083
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2752
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12325
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4593
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5253
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12084
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
reference allele: A
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-25470407-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470407
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470407
    reference: chr 3
allele count: 221
allele frequency: 1.947823021329103e-3
allele num: 113460
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32277C>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+385C>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.173+28C>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.173+28C>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.157+28C>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.173+28C>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32277C>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.188+28C>T
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3005
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13189
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 8315
  bin: 2.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 5.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 12394
  bin: 1.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6000
  bin: 3.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 3.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 10847
  bin: 2.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3742
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1533
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1739
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2215
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP

3-25470411-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470411
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470412
    reference: chr 3
allele count: 631
allele frequency: 7.713936430317848e-3
allele num: 81800
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32263dupA
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.173+42dupA
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.173+42dupA
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.188+42dupA
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.157+42dupA
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+399dupA
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.173+42dupA
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32263dupA
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4885
  bin: 3.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 9771
  bin: 2.75e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 3.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 8258
  bin: 2.25e1
  variant carriers: 251
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13914
  bin: 1.75e1
  variant carriers: 312
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 7.5e0
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 14063
  bin: 1.25e1
  variant carriers: 131
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 4.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1988
  bin: 1.75e1
  variant carriers: 73
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 4.75e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 3312
  bin: 3.75e1
  variant carriers: 89
genotype quality: GenotypeQuality
  all individuals: 1610
  bin: 6.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 2413
  bin: 1.25e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 5378
  bin: 3.25e1
  variant carriers: 87
genotype quality: GenotypeQuality
  all individuals: 11417
  bin: 2.25e1
  variant carriers: 105
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 5.75e1
  variant carriers: 28
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

3-25470411-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470411
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470410
    reference: chr 3
allele count: 505
allele frequency: 6.17359413202934e-3
allele num: 81800
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.173+42delA
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32263delA
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.173+42delA
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32263delA
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+399delA
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.188+42delA
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.157+42delA
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.173+42delA
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9771
  bin: 2.75e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 5.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 8258
  bin: 2.25e1
  variant carriers: 114
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 4.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 13914
  bin: 1.75e1
  variant carriers: 120
genotype depth: GenotypeDepth
  all individuals: 14063
  bin: 1.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 4.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 3.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 4885
  bin: 3.25e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 4.75e1
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 1610
  bin: 6.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 11417
  bin: 2.25e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 1694
  bin: 4.25e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 1673
  bin: 9.75e1
  variant carriers: 72
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 5.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 4986
  bin: 2.75e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 2413
  bin: 1.25e1
  variant carriers: 35
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: GA
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

3-25470415-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470415
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470415
    reference: chr 3
allele count: 1
allele frequency: 9.081827263645446e-6
allele num: 110110
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.173+36A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.157+36A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32269A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.173+36A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32269A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.173+36A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.188+36A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+393A>G
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6305
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9074
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4697
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13509
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18714
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4065
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1991
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2675
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

3-25470420-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470420
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470420
    reference: chr 3
allele count: 2
allele frequency: 1.841620626151013e-5
allele num: 108600
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.157+41A>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+398A>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32264A>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.188+41A>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.173+41A>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.173+41A>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32264A>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.173+41A>T
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17290
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6519
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18318
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5121
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1992
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8395
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9140
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

3-25470422-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25470422
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25470422
    reference: chr 3
allele count: 1
allele frequency: 9.698944754810677e-6
allele num: 103104
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.157+43T>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.173+43T>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.173+43T>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-32262T>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-180+400T>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.173+43T>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.188+43T>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-32262T>A
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 17324
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4797
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17673
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7036
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2861
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1931
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1457
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6531
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8299
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

3-25502641-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25502641
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25502641
    reference: chr 3
allele count: 4
allele frequency: 3.632796890325862e-5
allele num: 110108
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000391391
  ensembl transcript: ENST00000458646
  gene symbol: RARB
  hgvsc: ENST00000458646.1:c.-179-43T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-43T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.174-43T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-179-43T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.189-43T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.174-43T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.174-43T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-43T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.158-43T>C
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8273
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2939
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6679
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7863
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8708
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4655
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1616
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2505
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3609
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff

3-25502651-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25502651
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25502652
    reference: chr 3
allele count: 1
allele frequency: 9.050592813829306e-6
allele num: 110490
alternate allele: CT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.158-27dupT
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.174-27dupT
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-179-27dupT
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-27dupT
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.189-27dupT
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.174-27dupT
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000391391
  ensembl transcript: ENST00000458646
  gene symbol: RARB
  hgvsc: ENST00000458646.1:c.-179-27dupT
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.174-27dupT
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-27dupT
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4663
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7952
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8756
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8297
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6716
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2939
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2912
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2534
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

3-25502653-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25502653
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25502653
    reference: chr 3
allele count: 1
allele frequency: 9.04224537037037e-6
allele num: 110592
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.158-31T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000391391
  ensembl transcript: ENST00000458646
  gene symbol: RARB
  hgvsc: ENST00000458646.1:c.-179-31T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.174-31T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-31T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-179-31T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-31T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.174-31T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.189-31T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.174-31T>C
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4071
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4665
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7954
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8303
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3615
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2940
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6718
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8758
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1653
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2928
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: African
reference allele: T
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-25502658-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25502658
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25502658
    reference: chr 3
allele count: 1
allele frequency: 9.013231423730036e-6
allele num: 110948
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.174-26C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.158-26C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-179-26C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-26C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.174-26C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.189-26C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-26C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000391391
  ensembl transcript: ENST00000458646
  gene symbol: RARB
  hgvsc: ENST00000458646.1:c.-179-26C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.174-26C>G
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6722
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4666
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8769
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7972
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4537
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1665
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS

http://identifiers.org/exac.variant/3-25502668-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25502668
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25502668
    reference: chr 3
allele count: 2
allele frequency: 1.773867385674247e-5
allele num: 112748
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000391391
  ensembl transcript: ENST00000458646
  gene symbol: RARB
  hgvsc: ENST00000458646.1:c.-179-16C>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.158-16C>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-16C>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-16C>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.174-16C>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.174-16C>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.189-16C>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.174-16C>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-179-16C>A
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3893
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8769
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5444
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8008
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6725
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4667
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3836
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

3-25502668-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25502668
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25502668
    reference: chr 3
allele count: 1
allele frequency: 8.869336928371234e-6
allele num: 112748
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.174-16C>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-179-16C>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.174-16C>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.174-16C>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000391391
  ensembl transcript: ENST00000458646
  gene symbol: RARB
  hgvsc: ENST00000458646.1:c.-179-16C>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.158-16C>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.189-16C>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-16C>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-16C>T
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8769
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4667
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6725
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8008
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3893
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5444
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5206
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1685
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33515
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/3-25502669-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25502669
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25502669
    reference: chr 3
allele count: 52
allele frequency: 4.598432995525371e-4
allele num: 113082
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.189-15C>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000391391
  ensembl transcript: ENST00000458646
  gene symbol: RARB
  hgvsc: ENST00000458646.1:c.-179-15C>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.174-15C>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-179-15C>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-15C>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.174-15C>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.174-15C>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-15C>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.158-15C>A
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6726
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2943
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8303
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8763
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5449
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4674
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4674
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3756
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ

3-25502669-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25502669
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25502669
    reference: chr 3
allele count: 8
allele frequency: 7.074512300808263e-5
allele num: 113082
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.174-15C>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.174-15C>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-15C>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.158-15C>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-179-15C>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-15C>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.174-15C>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.189-15C>T
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000391391
  ensembl transcript: ENST00000458646
  gene symbol: RARB
  hgvsc: ENST00000458646.1:c.-179-15C>T
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5449
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4674
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8763
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2943
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6726
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8303
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3660
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3318
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/3-25502675-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25502675
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25502675
    reference: chr 3
allele count: 1
allele frequency: 8.749825003499931e-6
allele num: 114288
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.174-9C>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-179-9C>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.174-9C>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.158-9C>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000391391
  ensembl transcript: ENST00000458646
  gene symbol: RARB
  hgvsc: ENST00000458646.1:c.-179-9C>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-9C>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.174-9C>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-9C>A
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.189-9C>A
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8288
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6716
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5487
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5275
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3317
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7991
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3650
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2091
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3313
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2697
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

3-25502675-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25502675
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25502675
    reference: chr 3
allele count: 245
allele frequency: 2.143707125857483e-3
allele num: 114288
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.189-9C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-9C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000391391
  ensembl transcript: ENST00000458646
  gene symbol: RARB
  hgvsc: ENST00000458646.1:c.-179-9C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.158-9C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-9C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.174-9C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.174-9C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.174-9C>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-179-9C>G
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 5.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 8288
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8759
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 9.75e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 5275
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 7991
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 6.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 6716
  bin: 4.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 3317
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 7.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5487
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 8.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 5.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3335
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2955
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2697
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1699
  bin: 7.25e1
  variant carriers: 1
num of homozygotes: 7
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum

3-25502677-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25502677
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25502677
    reference: chr 3
allele count: 5
allele frequency: 4.359577992850292e-5
allele num: 114690
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.174-7A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.158-7A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.174-7A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.174-7A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-179-7A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-7A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.189-7A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-7A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000391391
  ensembl transcript: ENST00000458646
  gene symbol: RARB
  hgvsc: ENST00000458646.1:c.-179-7A>G
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5514
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4685
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8007
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2951
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5493
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6730
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8775
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3325
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3664
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
hgvs: c.158-7A>G
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-25502679-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25502679
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25502679
    reference: chr 3
allele count: 2
allele frequency: 1.737136504186499e-5
allele num: 115132
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-179-5T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.174-5T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.158-5T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.174-5T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.174-5T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-5T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000391391
  ensembl transcript: ENST00000458646
  gene symbol: RARB
  hgvsc: ENST00000458646.1:c.-179-5T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-5T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.189-5T>C
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2951
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8777
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6730
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5748
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4684
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 2.75e1
  variant carriers: 0
hgvs: c.158-5T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

3-25502681-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25502681
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25502681
    reference: chr 3
allele count: 1
allele frequency: 8.660258075690655e-6
allele num: 115470
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.179-3T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.174-3T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000391391
  ensembl transcript: ENST00000458646
  gene symbol: RARB
  hgvsc: ENST00000458646.1:c.-179-3T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.174-3T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.158-3T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.174-3T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-179-3T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.179-3T>C
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.189-3T>C
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5967
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2780
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6730
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2953
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8777
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5555
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8008
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4684
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
hgvs: c.158-3T>C
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum

3-25502686-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25502686
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25502686
    reference: chr 3
allele count: 1
allele frequency: 8.58236495648741e-6
allele num: 116518
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000332296
  ensembl transcript: ENST00000330688
  gene symbol: RARB
  hgvsc: ENST00000330688.4:c.160A>G
  hgvsp: ENSP00000332296.4:p.Ile54Val
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000398840
  ensembl transcript: ENST00000437042
  gene symbol: RARB
  hgvsc: ENST00000437042.2:c.-177A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000385865
  ensembl transcript: ENST00000404969
  gene symbol: RARB
  hgvsc: ENST00000404969.1:c.181A>G
  hgvsp: ENSP00000385865.1:p.Ile61Val
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000373282
  ensembl transcript: ENST00000383772
  gene symbol: RARB
  hgvsc: ENST00000383772.4:c.181A>G
  hgvsp: ENSP00000373282.4:p.Ile61Val
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000480001
  gene symbol: RARB
  hgvsc: ENST00000480001.1:n.176A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000479097
  gene symbol: RARB
  hgvsc: ENST00000479097.1:n.176A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000489694
  gene symbol: RARB
  hgvsc: ENST00000489694.1:n.191A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000077092
  ensembl transcript: ENST00000462272
  gene symbol: RARB
  hgvsc: ENST00000462272.1:n.176A>G
  variant of: http://identifiers.org/hgnc/9865
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000077092
  ensembl protein: ENSP00000391391
  ensembl transcript: ENST00000458646
  gene symbol: RARB
  hgvsc: ENST00000458646.1:c.-177A>G
  variant of: http://identifiers.org/hgnc/9865
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6730
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6422
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8026
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8777
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2953
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4684
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5674
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ile54Val
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

3-25502691-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 25502691
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 25502691
    reference: chr 3
allele count: 1
allele frequency: 8.522533578782301e-6
allele num: 117336
alternate allele: G
canonical: true
consequence: synonymous
filter: PASS
hgvs: p.Glu55Glu
num of homozygotes: 0
reference allele: A

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.453385672227674e-4
allele num: 8152
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8182
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11334
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16216
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.505e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e0

VQSLOD
type: SiteQuality
SIO_000300: 8.070000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.08e-1

MQ
type: SiteQuality
SIO_000300: 5.94e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.625076e6

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61250
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8140
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8174
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.169792694965449e-5
allele num: 16208
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.269e0

QD
type: SiteQuality
SIO_000300: 1.411e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.26e-1

FS
type: SiteQuality
SIO_000300: 2.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.273e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.02e-1

DP
type: SiteQuality
SIO_000300: 1.6223e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.81e-1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.634788294915808e-5
allele num: 61170
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8130
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8162
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.85e-1

MQ
type: SiteQuality
SIO_000300: 5.906e1

QD
type: SiteQuality
SIO_000300: 1.305e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.58e-1

FS
type: SiteQuality
SIO_000300: 3.137e0

VQSLOD
type: SiteQuality
SIO_000300: -8.172e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.64e0

DP
type: SiteQuality
SIO_000300: 1.616273e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.039e0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16196
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8158
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8130
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.536693191865606e-4
allele num: 11310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.112000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.0723e1

DP
type: SiteQuality
SIO_000300: 1.615111e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

QD
type: SiteQuality
SIO_000300: 1.306e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.16e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16172
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8120
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11298
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8150
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.274287024000524e-5
allele num: 61082
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.998e0

QD
type: SiteQuality
SIO_000300: 1.209e1

FS
type: SiteQuality
SIO_000300: 1.939e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.604e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e0

DP
type: SiteQuality
SIO_000300: 1.6096e6

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16172
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8122
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.454590083456063e-4
allele num: 8148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61070
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.122e1

DP
type: SiteQuality
SIO_000300: 1.607737e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.84e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.654e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.094e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.4147e1

MQRankSum
type: SiteQuality
SIO_000300: 1.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16162
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.461841457410143e-4
allele num: 8124
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.606012e6

FS
type: SiteQuality
SIO_000300: 1.003e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e0

VQSLOD
type: SiteQuality
SIO_000300: -2.616e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.61e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.04e-1

QD
type: SiteQuality
SIO_000300: 2.301e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16154
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60996
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.232134056185313e-4
allele num: 8116
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8142
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.64e-1

DP
type: SiteQuality
SIO_000300: 1.603312e6

VQSLOD
type: SiteQuality
SIO_000300: 4.72e-1

FS
type: SiteQuality
SIO_000300: 1.171e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.457e0

QD
type: SiteQuality
SIO_000300: 1.019e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.46e-1

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.284611594678929e-5
allele num: 60890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8092
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.201923076923077e-3
allele num: 832
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11268
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16124
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8118
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.34e-1

FS
type: SiteQuality
SIO_000300: 1.327e0

QD
type: SiteQuality
SIO_000300: 1.36e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.68e-1

DP
type: SiteQuality
SIO_000300: 1.594904e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.57e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.67e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11064
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7964
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.2672348959639e-5
allele num: 15956
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8022
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59974
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.654e0

FS
type: SiteQuality
SIO_000300: 4.624e0

QD
type: SiteQuality
SIO_000300: 1.865e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.74e-1

DP
type: SiteQuality
SIO_000300: 1.497417e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.675e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.19e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7962
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10986
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.309e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.29e-1

FS
type: SiteQuality
SIO_000300: 4.217e0

DP
type: SiteQuality
SIO_000300: 1.422383e6

VQSLOD
type: SiteQuality
SIO_000300: -4.57e-2

QD
type: SiteQuality
SIO_000300: 1.795e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10968
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6462
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.294850812035755e-5
allele num: 15886
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.531645569620253e-4
allele num: 7900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7966
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59562
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.971e0

VQSLOD
type: SiteQuality
SIO_000300: 2.96e0

QD
type: SiteQuality
SIO_000300: 1.515e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -5.590000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.86e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.420814e6

Latino
type: Population
allele count: 1
allele frequency: 9.117432530999271e-5
allele num: 10968
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7966
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.036768409388536e-5
allele num: 59562
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.265822784810127e-4
allele num: 7900
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15886
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.96e0

DP
type: SiteQuality
SIO_000300: 1.420814e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.590000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.515e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.74e-1

FS
type: SiteQuality
SIO_000300: 2.971e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.682708487581611e-5
allele num: 59428
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10936
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.89e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.224e0

FS
type: SiteQuality
SIO_000300: 7.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e-1

DP
type: SiteQuality
SIO_000300: 1.376794e6

QD
type: SiteQuality
SIO_000300: 1.189e1

East Asian
type: Population
allele count: 2
allele frequency: 2.517623363544814e-4
allele num: 7944
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10930
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.684295627568551e-5
allele num: 59372
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.89e-1

FS
type: SiteQuality
SIO_000300: 1.311e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

DP
type: SiteQuality
SIO_000300: 1.362996e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.127e0

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

QD
type: SiteQuality
SIO_000300: 1.345e1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7864
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59238
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7916
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.317119393556538e-5
allele num: 15830
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.309096e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.26e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.343e1

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59168
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.164556962025317e-4
allele num: 15800
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.55e-1

QD
type: SiteQuality
SIO_000300: 1.099e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.744e0

VQSLOD
type: SiteQuality
SIO_000300: 9.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.135e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.870000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.296926e6

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7832
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10822
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.703577512776831e-5
allele num: 58700
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.95e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e0

VQSLOD
type: SiteQuality
SIO_000300: -2.779e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 1.224784e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.133e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.208152494705045e-5
allele num: 57602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7664
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

DP
type: SiteQuality
SIO_000300: 1.157468e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.71e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.51e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.19e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.403e1

GenotypeQuality
all individuals: 330
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2085
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8911
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66004
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14786
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.152e1

DP
type: SiteQuality
SIO_000300: 1.831939e6

VQSLOD
type: SiteQuality
SIO_000300: -1.036e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

MQRankSum
type: SiteQuality
SIO_000300: 1.86e0

FS
type: SiteQuality
SIO_000300: 1.969e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.447e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.33e-1

GenotypeQuality
all individuals: 347
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 9
allele frequency: 8.660508083140878e-4
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 14
allele frequency: 1.209816799170411e-3
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.535833081342606e-4
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 170
allele frequency: 2.572561363154868e-3
allele num: 66082
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.252252252252252e-3
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 16
allele frequency: 1.069804760631185e-3
allele num: 14956
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.51e0

QD
type: SiteQuality
SIO_000300: 1.402e1

MQ
type: SiteQuality
SIO_000300: 5.978e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.03e-1

FS
type: SiteQuality
SIO_000300: 7.3e-1

DP
type: SiteQuality
SIO_000300: 1.840421e6

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15086
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
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East Asian
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Other
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allele frequency: 0.0e0
allele num: 888
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European (Non-Finnish)
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allele frequency: 1.512218727316719e-5
allele num: 66128
num of homozygotes: 0

ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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QD
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BaseQRankSum
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MQRankSum
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FS
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MQ
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ClippingRankSum
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 10398
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European (Non-Finnish)
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allele frequency: 1.508295625942685e-5
allele num: 66300
num of homozygotes: 0

Other
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num of homozygotes: 0

ClippingRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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MQ
type: SiteQuality
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DP
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FS
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 15540
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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European (Non-Finnish)
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allele num: 66300
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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FS
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DP
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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South Asian
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Other
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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FS
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VQSLOD
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ClippingRankSum
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MQ
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QD
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.505162708088744e-5
allele num: 66438
num of homozygotes: 0

Latino
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num of homozygotes: 0

QD
type: SiteQuality
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MQ
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ClippingRankSum
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DP
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
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MQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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African
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East Asian
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.501907422426482e-5
allele num: 66582
num of homozygotes: 0

Latino
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ClippingRankSum
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DP
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MQ
type: SiteQuality
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InbreedingCoeff
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QD
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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VQSLOD
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FS
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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European (Finnish)
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Other
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Latino
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South Asian
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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DP
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InbreedingCoeff
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VQSLOD
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FS
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MQ
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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South Asian
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European (Finnish)
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Other
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Latino
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East Asian
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VQSLOD
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ClippingRankSum
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QD
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FS
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MQ
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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European (Non-Finnish)
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Latino
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East Asian
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South Asian
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African
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MQ
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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FS
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VQSLOD
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BaseQRankSum
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MQRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Non-Finnish)
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South Asian
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European (Finnish)
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Latino
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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MQ
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BaseQRankSum
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ClippingRankSum
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FS
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QD
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DP
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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South Asian
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European (Non-Finnish)
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African
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European (Finnish)
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Latino
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VQSLOD
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BaseQRankSum
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DP
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MQ
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MQRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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Other
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East Asian
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European (Finnish)
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European (Non-Finnish)
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MQ
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FS
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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QD
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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South Asian
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African
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East Asian
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Latino
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DP
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QD
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MQ
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Finnish)
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Other
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European (Non-Finnish)
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South Asian
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InbreedingCoeff
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ClippingRankSum
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FS
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QD
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MQRankSum
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VQSLOD
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DP
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BaseQRankSum
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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European (Non-Finnish)
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South Asian
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East Asian
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European (Finnish)
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BaseQRankSum
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ReadPosRankSum
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MQ
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ClippingRankSum
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DP
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MQRankSum
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InbreedingCoeff
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VQSLOD
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QD
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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Other
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East Asian
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European (Non-Finnish)
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South Asian
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Latino
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DP
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MQRankSum
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ClippingRankSum
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FS
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MQ
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InbreedingCoeff
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QD
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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European (Non-Finnish)
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South Asian
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Other
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African
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Latino
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FS
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QD
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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MQ
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VQSLOD
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ClippingRankSum
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Other
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Latino
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European (Finnish)
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South Asian
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European (Non-Finnish)
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BaseQRankSum
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DP
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VQSLOD
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FS
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MQRankSum
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InbreedingCoeff
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MQ
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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African
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MQ
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BaseQRankSum
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VQSLOD
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MQRankSum
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ClippingRankSum
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FS
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InbreedingCoeff
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9237
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.264e0

MQRankSum
type: SiteQuality
SIO_000300: 9.84e-1

MQ
type: SiteQuality
SIO_000300: 5.983e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.64e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 5.424e0

DP
type: SiteQuality
SIO_000300: 1.87182e6

QD
type: SiteQuality
SIO_000300: 1.336e1

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9238
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.965e1

MQRankSum
type: SiteQuality
SIO_000300: 6.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.320000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.871376e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.103e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.52e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.87e-1

FS
type: SiteQuality
SIO_000300: 1.116e0

QD
type: SiteQuality
SIO_000300: 1.528e1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.268e0

QD
type: SiteQuality
SIO_000300: 1.634e1

VQSLOD
type: SiteQuality
SIO_000300: -1.502e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.905e1

FS
type: SiteQuality
SIO_000300: 6.619e0

DP
type: SiteQuality
SIO_000300: 1.870676e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.79e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2119
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.498275396658768e-5
allele num: 66682
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.967e1

FS
type: SiteQuality
SIO_000300: 2.129e0

DP
type: SiteQuality
SIO_000300: 1.869595e6

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

QD
type: SiteQuality
SIO_000300: 1.406e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.8e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.81e-1

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2119
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.967e1

MQRankSum
type: SiteQuality
SIO_000300: -1.28e-1

DP
type: SiteQuality
SIO_000300: 1.869595e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.8e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.81e-1

QD
type: SiteQuality
SIO_000300: 1.406e1

FS
type: SiteQuality
SIO_000300: 2.129e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.065752759917505e-5
allele num: 16486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66642
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.163e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.39e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

MQRankSum
type: SiteQuality
SIO_000300: -7.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.84e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.09e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.591e1

DP
type: SiteQuality
SIO_000300: 1.867482e6

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65744
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.271165182490907e-5
allele num: 15946
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

VQSLOD
type: SiteQuality
SIO_000300: -2.853e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.779486e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 3.004e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1829
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539645881447267e-5
allele num: 64950
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6552
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15710
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.696076e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.3e-1

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.95e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.79e0

MQRankSum
type: SiteQuality
SIO_000300: 1.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 7

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11122
num of homozygotes: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 9.409403130194775e-5
allele num: 63766
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.537515375153752e-4
allele num: 6504
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
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allele num: 868
num of homozygotes: 0

InbreedingCoeff
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.838e1

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.74e-1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.777e1

VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11120
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10184
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.524008350730688e-5
allele num: 15328
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63676
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

FS
type: SiteQuality
SIO_000300: 1.862e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.647e0

DP
type: SiteQuality
SIO_000300: 1.519773e6

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.911e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.205e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 4266
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11534
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1432
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3824
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1330
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18570
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5263
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1028
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11066
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15170
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.73134328358209e-4
allele num: 8040
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63310
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10154
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.02e-1

QD
type: SiteQuality
SIO_000300: 1.414e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

VQSLOD
type: SiteQuality
SIO_000300: 9.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.78e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

DP
type: SiteQuality
SIO_000300: 1.454425e6

GenotypeQuality
all individuals: 436
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1008
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1136
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1739
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3731
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2274
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1777
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1494
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6378
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7880
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.751282743721307e-5
allele num: 14812
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10920
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10074
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.386343e6

QD
type: SiteQuality
SIO_000300: 1.563e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.23e-1

MQ
type: SiteQuality
SIO_000300: 5.899e1

MQRankSum
type: SiteQuality
SIO_000300: 2.25e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

GenotypeQuality
all individuals: 94
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5279
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 523
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13109
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 340
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6359
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12228
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2928
bin: 9.75e1
variant carriers: 214

GenotypeQuality
all individuals: 999
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4556
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1476
bin: 7.75e1
variant carriers: 2

African
type: Population
allele count: 191
allele frequency: 1.896346306592534e-2
allele num: 10072
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6460
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.404391582799634e-4
allele num: 10930
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.179245283018868e-3
allele num: 848
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14820
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 22
allele frequency: 3.523269594183402e-4
allele num: 62442
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.606e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.17e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

QD
type: SiteQuality
SIO_000300: 1.232e1

VQSLOD
type: SiteQuality
SIO_000300: 4.32e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e-1

DP
type: SiteQuality
SIO_000300: 1.383499e6

GenotypeQuality
all individuals: 335
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1673
bin: 9.75e1
variant carriers: 38

GenotypeQuality
all individuals: 1122
bin: 5.25e1
variant carriers: 47

GenotypeQuality
all individuals: 2997
bin: 7.5e0
variant carriers: 50

GenotypeQuality
all individuals: 10135
bin: 2.5e0
variant carriers: 38

GenotypeQuality
all individuals: 614
bin: 7.75e1
variant carriers: 6

GenotypeQuality
all individuals: 590
bin: 7.25e1
variant carriers: 8

GenotypeQuality
all individuals: 1694
bin: 4.25e1
variant carriers: 60

GenotypeQuality
all individuals: 4986
bin: 2.75e1
variant carriers: 89

GenotypeQuality
all individuals: 7518
bin: 6.25e1
variant carriers: 20

GenotypeQuality
all individuals: 459
bin: 8.25e1
variant carriers: 7

GenotypeQuality
all individuals: 225
bin: 8.75e1
variant carriers: 2

Other
type: Population
allele count: 6
allele frequency: 9.49367088607595e-3
allele num: 632
num of homozygotes: 0

Latino
type: Population
allele count: 67
allele frequency: 8.769633507853402e-3
allele num: 7640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 289
allele frequency: 6.309768132395965e-3
allele num: 45802
num of homozygotes: 0

African
type: Population
allele count: 62
allele frequency: 7.983517898532062e-3
allele num: 7766
num of homozygotes: 0

East Asian
type: Population
allele count: 39
allele frequency: 6.868615709756957e-3
allele num: 5678
num of homozygotes: 0

South Asian
type: Population
allele count: 154
allele frequency: 1.731893837156995e-2
allele num: 8892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 14
allele frequency: 2.597402597402597e-3
allele num: 5390
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.32874e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.21e-2

QD
type: SiteQuality
SIO_000300: 1.04e0

VQSLOD
type: SiteQuality
SIO_000300: 3.13e0

MQRankSum
type: SiteQuality
SIO_000300: 2.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.49e-1

GenotypeQuality
all individuals: 614
bin: 7.75e1
variant carriers: 12

GenotypeQuality
all individuals: 225
bin: 8.75e1
variant carriers: 7

GenotypeQuality
all individuals: 590
bin: 7.25e1
variant carriers: 21

GenotypeQuality
all individuals: 2997
bin: 7.5e0
variant carriers: 26

GenotypeQuality
all individuals: 1988
bin: 1.75e1
variant carriers: 50

GenotypeQuality
all individuals: 10135
bin: 2.5e0
variant carriers: 32

GenotypeQuality
all individuals: 3312
bin: 3.75e1
variant carriers: 48

GenotypeQuality
all individuals: 5378
bin: 3.25e1
variant carriers: 60

GenotypeQuality
all individuals: 459
bin: 8.25e1
variant carriers: 10

GenotypeQuality
all individuals: 1122
bin: 5.25e1
variant carriers: 32

GenotypeQuality
all individuals: 7518
bin: 6.25e1
variant carriers: 22

GenotypeQuality
all individuals: 335
bin: 9.25e1
variant carriers: 7

European (Non-Finnish)
type: Population
allele count: 377
allele frequency: 8.231081612156674e-3
allele num: 45802
num of homozygotes: 0

South Asian
type: Population
allele count: 41
allele frequency: 4.610886189833558e-3
allele num: 8892
num of homozygotes: 0

Latino
type: Population
allele count: 30
allele frequency: 3.926701570680628e-3
allele num: 7640
num of homozygotes: 0

African
type: Population
allele count: 25
allele frequency: 3.219160442956477e-3
allele num: 7766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 7.421150278293135e-4
allele num: 5390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

East Asian
type: Population
allele count: 28
allele frequency: 4.931313842902431e-3
allele num: 5678
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.28e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.04e0

VQSLOD
type: SiteQuality
SIO_000300: 3.13e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.21e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.06e-1

DP
type: SiteQuality
SIO_000300: 1.32874e6

GenotypeQuality
all individuals: 440
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16619
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1066
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14067
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7343
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6483
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 604
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9902
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.131650263871059e-5
allele num: 14022
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10664
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6410
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.203343e6

QD
type: SiteQuality
SIO_000300: 1.124e1

VQSLOD
type: SiteQuality
SIO_000300: 3.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 778
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15909
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1729
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5609
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 867
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6851
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1801
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2447
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9830
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.34235769912096e-5
allele num: 59838
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13736
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.471e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.67e0

DP
type: SiteQuality
SIO_000300: 1.163663e6

MQRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

FS
type: SiteQuality
SIO_000300: 2.955e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

GenotypeQuality
all individuals: 14241
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6149
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2105
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2469
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1661
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5532
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1981
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1119
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 779
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.754632229084784e-5
allele num: 56992
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6260
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7124
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.251e0

QD
type: SiteQuality
SIO_000300: 7.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.07e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.02e-1

DP
type: SiteQuality
SIO_000300: 1.141179e6

GenotypeQuality
all individuals: 1428
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3615
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2450
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3248
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2883
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2066
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33449
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 125
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63536
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.026575397624321e-4
allele num: 9934
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8344
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.54e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.380035e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.02e-1

FS
type: SiteQuality
SIO_000300: 1.426e0

QD
type: SiteQuality
SIO_000300: 1.518e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63658
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.793527963418924e-5
allele num: 11372
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9948
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9770
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

DP
type: SiteQuality
SIO_000300: 2.393623e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

FS
type: SiteQuality
SIO_000300: 4.651e0

MQRankSum
type: SiteQuality
SIO_000300: 4.5e-1

QD
type: SiteQuality
SIO_000300: 1.201e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.45e-1

MQ
type: SiteQuality
SIO_000300: 6.014e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.195314367678699e-4
allele num: 8366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63704
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9820
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9952
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.934e1

DP
type: SiteQuality
SIO_000300: 2.396327e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.73e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.44e1

MQRankSum
type: SiteQuality
SIO_000300: -6.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.48e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9994
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8384
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.000400160064026e-4
allele num: 9996
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63800
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.45e-1

MQ
type: SiteQuality
SIO_000300: 5.604e1

DP
type: SiteQuality
SIO_000300: 2.403475e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

QD
type: SiteQuality
SIO_000300: 1.371e1

VQSLOD
type: SiteQuality
SIO_000300: -9.846e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

FS
type: SiteQuality
SIO_000300: 4.959e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64312
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.807991321641656e-4
allele num: 11062
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10084
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.41e-1

FS
type: SiteQuality
SIO_000300: 7.11e-1

QD
type: SiteQuality
SIO_000300: 1.156e1

DP
type: SiteQuality
SIO_000300: 2.41928e6

MQ
type: SiteQuality
SIO_000300: 5.95e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.282e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.48e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10084
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.039956608208281e-5
allele num: 11062
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64312
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

DP
type: SiteQuality
SIO_000300: 2.41928e6

FS
type: SiteQuality
SIO_000300: 7.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.48e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

MQRankSum
type: SiteQuality
SIO_000300: -8.41e-1

QD
type: SiteQuality
SIO_000300: 1.156e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.282e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.79e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 52

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11262
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.036744609778318e-4
allele num: 6586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 50
allele frequency: 7.762528721356269e-4
allele num: 64412
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

FS
type: SiteQuality
SIO_000300: 7.811e0

QD
type: SiteQuality
SIO_000300: 1.145e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.26e0

DP
type: SiteQuality
SIO_000300: 2.423345e6

MQ
type: SiteQuality
SIO_000300: 5.967e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 8

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 7.922360863537334e-4
allele num: 10098
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.98e-1

FS
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.423345e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
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African
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.545308443565336e-5
allele num: 64712
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.441717e6

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3650
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5855
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33664
bin: 9.75e1
variant carriers: 237

African
type: Population
allele count: 239
allele frequency: 2.353288696337141e-2
allele num: 10156
num of homozygotes: 7

Latino
type: Population
allele count: 6
allele frequency: 5.240174672489083e-4
allele num: 11450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12038
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.542e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

FS
type: SiteQuality
SIO_000300: 6.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.77e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.25e0

DP
type: SiteQuality
SIO_000300: 2.441717e6

MQ
type: SiteQuality
SIO_000300: 5.977e1

MQRankSum
type: SiteQuality
SIO_000300: 2.56e-1

GenotypeQuality
all individuals: 34
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2967
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1706
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33595
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 316
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3145
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2094
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2733
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6006
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.626545217957059e-4
allele num: 12296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.085753078038695e-5
allele num: 64814
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10172
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.730574471800244e-5
allele num: 11454
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

MQRankSum
type: SiteQuality
SIO_000300: 3.09e-1

QD
type: SiteQuality
SIO_000300: 1.58e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.45e-1

DP
type: SiteQuality
SIO_000300: 2.439432e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.519e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.65e-1

GenotypeQuality
all individuals: 139
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6333
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2971
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1711
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2981
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33591
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2093
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2748
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3328
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3665
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.080619820707927e-5
allele num: 64922
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-2

DP
type: SiteQuality
SIO_000300: 2.443035e6

FS
type: SiteQuality
SIO_000300: 2.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.86e0

QD
type: SiteQuality
SIO_000300: 1.432e1

VQSLOD
type: SiteQuality
SIO_000300: 7.7e-1

GenotypeQuality
all individuals: 2758
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6534
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2093
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33592
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 78
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2971
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2820
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3665
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3324
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1709
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.791803023219573e-5
allele num: 12834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65004
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.279e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.13e0

MQRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.414e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

QD
type: SiteQuality
SIO_000300: 1.081e1

DP
type: SiteQuality
SIO_000300: 2.44619e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.03e0

GenotypeQuality
all individuals: 6949
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33591
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2802
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2094
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3329
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2375
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3669
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2987
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1726
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531440472908818e-5
allele num: 65298
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.45544e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.724e0

QD
type: SiteQuality
SIO_000300: 1.4e1

VQSLOD
type: SiteQuality
SIO_000300: 4.92e-1

FS
type: SiteQuality
SIO_000300: 2.877e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e0

MQRankSum
type: SiteQuality
SIO_000300: -7.84e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.67e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3