3-49147666-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147666
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147666
    reference: chr 3
allele count: 1
allele frequency: 8.983434546695893e-6
allele num: 111316
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3953C>T
  hgvsp: ENSP00000400090.1:p.Ser1318Phe
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3989C>T
  hgvsp: ENSP00000395260.1:p.Ser1330Phe
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3800C>T
  hgvsp: ENSP00000381872.2:p.Ser1267Phe
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3983C>T
  hgvsp: ENSP00000401197.2:p.Ser1328Phe
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3680C>T
  hgvsp: ENSP00000381863.2:p.Ser1227Phe
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.3104C>T
  hgvsp: ENSP00000381870.1:p.Ser1035Phe
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3800C>T
  hgvsp: ENSP00000381867.3:p.Ser1267Phe
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.338C>T
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4212
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4692
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8092
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3871
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2489
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3522
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser1328Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ

3-49147668-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147668
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147668
    reference: chr 3
allele count: 1
allele frequency: 8.974243919949743e-6
allele num: 111430
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.3102C>T
  hgvsp: ENST00000398896.1:c.3102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3678C>T
  hgvsp: ENST00000398888.2:c.3678C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3981C>T
  hgvsp: ENST00000434032.2:c.3981C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3951C>T
  hgvsp: ENST00000453664.1:c.3951C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3798C>T
  hgvsp: ENST00000398892.3:c.3798C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3987C>T
  hgvsp: ENST00000417901.1:c.3987C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.336C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3798C>T
  hgvsp: ENST00000398898.2:c.3798C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8154
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7057
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8092
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3874
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4692
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8268
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3365
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His1327His
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

3-49147676-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147676
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147676
    reference: chr 3
allele count: 1
allele frequency: 8.928730870194111e-6
allele num: 111998
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.328G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.3094G>A
  hgvsp: ENSP00000381870.1:p.Ala1032Thr
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3790G>A
  hgvsp: ENSP00000381872.2:p.Ala1264Thr
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3973G>A
  hgvsp: ENSP00000401197.2:p.Ala1325Thr
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3979G>A
  hgvsp: ENSP00000395260.1:p.Ala1327Thr
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3670G>A
  hgvsp: ENSP00000381863.2:p.Ala1224Thr
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3943G>A
  hgvsp: ENSP00000400090.1:p.Ala1315Thr
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3790G>A
  hgvsp: ENSP00000381867.3:p.Ala1264Thr
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8095
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4366
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7111
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4692
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6193
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8153
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2169
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2488
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8304
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala1325Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

3-49147680-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147680
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147680
    reference: chr 3
allele count: 2
allele frequency: 1.778378474506945e-5
allele num: 112462
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.3090C>G
  hgvsp: ENST00000398896.1:c.3090C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3786C>G
  hgvsp: ENST00000398892.3:c.3786C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3786C>G
  hgvsp: ENST00000398898.2:c.3786C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3969C>G
  hgvsp: ENST00000434032.2:c.3969C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3975C>G
  hgvsp: ENST00000417901.1:c.3975C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3939C>G
  hgvsp: ENST00000453664.1:c.3939C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.324C>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3666C>G
  hgvsp: ENST00000398888.2:c.3666C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3627
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8118
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4691
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8168
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4563
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2920
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2487
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25865
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3781
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro1323Pro
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

3-49147683-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147683
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147683
    reference: chr 3
allele count: 1
allele frequency: 8.859436185481156e-6
allele num: 112874
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.321C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.3087C>T
  hgvsp: ENST00000398896.1:c.3087C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3783C>T
  hgvsp: ENST00000398898.2:c.3783C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3663C>T
  hgvsp: ENST00000398888.2:c.3663C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3936C>T
  hgvsp: ENST00000453664.1:c.3936C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3966C>T
  hgvsp: ENST00000434032.2:c.3966C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3783C>T
  hgvsp: ENST00000398892.3:c.3783C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3972C>T
  hgvsp: ENST00000417901.1:c.3972C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7477
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4691
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2169
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25865
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8783
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3697
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3521
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro1322Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum

3-49147685-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147685
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147685
    reference: chr 3
allele count: 1
allele frequency: 8.848461252588174e-6
allele num: 113014
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.3085C>G
  hgvsp: ENSP00000381870.1:p.Pro1029Ala
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3661C>G
  hgvsp: ENSP00000381863.2:p.Pro1221Ala
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3781C>G
  hgvsp: ENSP00000381867.3:p.Pro1261Ala
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3934C>G
  hgvsp: ENSP00000400090.1:p.Pro1312Ala
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.319C>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3781C>G
  hgvsp: ENSP00000381872.2:p.Pro1261Ala
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3970C>G
  hgvsp: ENSP00000395260.1:p.Pro1324Ala
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3964C>G
  hgvsp: ENSP00000401197.2:p.Pro1322Ala
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6193
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7477
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3486
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8124
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4691
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2486
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3643
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro1322Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/3-49147686-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147686
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147686
    reference: chr 3
allele count: 1
allele frequency: 8.841576629944652e-6
allele num: 113102
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3963G>T
  hgvsp: ENSP00000401197.2:p.Arg1321Ser
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3660G>T
  hgvsp: ENSP00000381863.2:p.Arg1220Ser
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.318G>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3780G>T
  hgvsp: ENSP00000381867.3:p.Arg1260Ser
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3780G>T
  hgvsp: ENSP00000381872.2:p.Arg1260Ser
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3933G>T
  hgvsp: ENSP00000400090.1:p.Arg1311Ser
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3969G>T
  hgvsp: ENSP00000395260.1:p.Arg1323Ser
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.3084G>T
  hgvsp: ENSP00000381870.1:p.Arg1028Ser
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4771
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7183
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4691
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2486
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg1321Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

3-49147687-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147687
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147687
    reference: chr 3
allele count: 1
allele frequency: 8.82347750895583e-6
allele num: 113334
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3932G>C
  hgvsp: ENSP00000400090.1:p.Arg1311Thr
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3779G>C
  hgvsp: ENSP00000381872.2:p.Arg1260Thr
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.317G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3962G>C
  hgvsp: ENSP00000401197.2:p.Arg1321Thr
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3968G>C
  hgvsp: ENSP00000395260.1:p.Arg1323Thr
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3779G>C
  hgvsp: ENSP00000381867.3:p.Arg1260Thr
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.3083G>C
  hgvsp: ENSP00000381870.1:p.Arg1028Thr
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3659G>C
  hgvsp: ENSP00000381863.2:p.Arg1220Thr
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2169
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3353
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7477
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4837
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4691
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8129
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3536
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3589
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4618
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg1321Thr
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

3-49147692-CACAGGAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147692
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147685
    reference: chr 3
allele count: 1
allele frequency: 8.787037362482866e-6
allele num: 113804
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.305_311delCTCCTGT
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3950_3956delCTCCTGT
  hgvsp: ENSP00000401197.2:p.Ser1317TrpfsTer16
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3647_3653delCTCCTGT
  hgvsp: ENSP00000381863.2:p.Ser1216TrpfsTer16
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3767_3773delCTCCTGT
  hgvsp: ENSP00000381867.3:p.Ser1256TrpfsTer16
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.3071_3077delCTCCTGT
  hgvsp: ENSP00000381870.1:p.Ser1024TrpfsTer16
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3920_3926delCTCCTGT
  hgvsp: ENSP00000400090.1:p.Ser1307TrpfsTer16
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3956_3962delCTCCTGT
  hgvsp: ENSP00000395260.1:p.Ser1319TrpfsTer16
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3767_3773delCTCCTGT
  hgvsp: ENSP00000381872.2:p.Ser1256TrpfsTer16
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4691
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8156
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5076
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3340
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7220
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25864
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3367
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3523
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser1317TrpfsTer16
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: CACAGGAG
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD

3-49147706-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147706
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147706
    reference: chr 3
allele count: 6
allele frequency: 5.230855070442182e-5
allele num: 114704
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3943C>T
  hgvsp: ENSP00000401197.2:p.Arg1315Trp
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3760C>T
  hgvsp: ENSP00000381872.2:p.Arg1254Trp
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.3064C>T
  hgvsp: ENSP00000381870.1:p.Arg1022Trp
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3760C>T
  hgvsp: ENSP00000381867.3:p.Arg1254Trp
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3949C>T
  hgvsp: ENSP00000395260.1:p.Arg1317Trp
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.298C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3640C>T
  hgvsp: ENSP00000381863.2:p.Arg1214Trp
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3913C>T
  hgvsp: ENSP00000400090.1:p.Arg1305Trp
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7477
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7264
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2169
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4691
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5348
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9160
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3068
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3366
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg1315Trp
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/3-49147707-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147707
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147707
    reference: chr 3
allele count: 5
allele frequency: 4.355931908072413e-5
allele num: 114786
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.3063G>T
  hgvsp: ENST00000398896.1:c.3063G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3759G>T
  hgvsp: ENST00000398898.2:c.3759G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3912G>T
  hgvsp: ENST00000453664.1:c.3912G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3759G>T
  hgvsp: ENST00000398892.3:c.3759G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3639G>T
  hgvsp: ENST00000398888.2:c.3639G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3942G>T
  hgvsp: ENST00000434032.2:c.3942G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3948G>T
  hgvsp: ENST00000417901.1:c.3948G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.297G>T
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4691
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2773
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7477
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2169
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8142
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg1314Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS

3-49147708-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147708
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147708
    reference: chr 3
allele count: 2
allele frequency: 1.741674794482374e-5
allele num: 114832
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.3062G>A
  hgvsp: ENSP00000381870.1:p.Arg1021Gln
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.296G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3911G>A
  hgvsp: ENSP00000400090.1:p.Arg1304Gln
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3758G>A
  hgvsp: ENSP00000381872.2:p.Arg1253Gln
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3638G>A
  hgvsp: ENSP00000381863.2:p.Arg1213Gln
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3941G>A
  hgvsp: ENSP00000401197.2:p.Arg1314Gln
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3947G>A
  hgvsp: ENSP00000395260.1:p.Arg1316Gln
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3758G>A
  hgvsp: ENSP00000381867.3:p.Arg1253Gln
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4689
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7477
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5405
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25861
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg1314Gln
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

3-49147711-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147711
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147711
    reference: chr 3
allele count: 1
allele frequency: 8.697316008279845e-6
allele num: 114978
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3938G>A
  hgvsp: ENSP00000401197.2:p.Arg1313His
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3908G>A
  hgvsp: ENSP00000400090.1:p.Arg1303His
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3755G>A
  hgvsp: ENSP00000381872.2:p.Arg1252His
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3944G>A
  hgvsp: ENSP00000395260.1:p.Arg1315His
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3635G>A
  hgvsp: ENSP00000381863.2:p.Arg1212His
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.293G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.3059G>A
  hgvsp: ENSP00000381870.1:p.Arg1020His
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3755G>A
  hgvsp: ENSP00000381867.3:p.Arg1252His
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7299
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4690
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5473
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7481
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2936
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg1313His
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ

3-49147737-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147737
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147737
    reference: chr 3
allele count: 2
allele frequency: 1.73148180212626e-5
allele num: 115508
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3918G>A
  hgvsp: ENST00000417901.1:c.3918G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3609G>A
  hgvsp: ENST00000398888.2:c.3609G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3729G>A
  hgvsp: ENST00000398892.3:c.3729G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3882G>A
  hgvsp: ENST00000453664.1:c.3882G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.3033G>A
  hgvsp: ENST00000398896.1:c.3033G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3912G>A
  hgvsp: ENST00000434032.2:c.3912G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.267G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3729G>A
  hgvsp: ENST00000398898.2:c.3729G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8135
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7475
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7343
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25855
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr1304Thr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

3-49147738-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147738
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147738
    reference: chr 3
allele count: 1
allele frequency: 8.659208202002008e-6
allele num: 115484
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.3032C>T
  hgvsp: ENSP00000381870.1:p.Thr1011Met
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3881C>T
  hgvsp: ENSP00000400090.1:p.Thr1294Met
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3911C>T
  hgvsp: ENSP00000401197.2:p.Thr1304Met
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.266C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3917C>T
  hgvsp: ENSP00000395260.1:p.Thr1306Met
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3608C>T
  hgvsp: ENSP00000381863.2:p.Thr1203Met
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3728C>T
  hgvsp: ENSP00000381872.2:p.Thr1243Met
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3728C>T
  hgvsp: ENSP00000381867.3:p.Thr1243Met
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7474
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7330
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8129
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3357
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3586
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr1304Met
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

3-49147752-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147752
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147752
    reference: chr 3
allele count: 1
allele frequency: 8.66190839165685e-6
allele num: 115448
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.3018G>A
  hgvsp: ENST00000398896.1:c.3018G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3714G>A
  hgvsp: ENST00000398898.2:c.3714G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3594G>A
  hgvsp: ENST00000398888.2:c.3594G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3867G>A
  hgvsp: ENST00000453664.1:c.3867G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.252G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3897G>A
  hgvsp: ENST00000434032.2:c.3897G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3714G>A
  hgvsp: ENST00000398892.3:c.3714G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3903G>A
  hgvsp: ENST00000417901.1:c.3903G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3343
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8104
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7273
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7469
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu1299Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

3-49147754-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147754
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147754
    reference: chr 3
allele count: 7
allele frequency: 6.066278424847476e-5
allele num: 115392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3901G>A
  hgvsp: ENSP00000395260.1:p.Glu1301Lys
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3592G>A
  hgvsp: ENSP00000381863.2:p.Glu1198Lys
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.250G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3865G>A
  hgvsp: ENSP00000400090.1:p.Glu1289Lys
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3895G>A
  hgvsp: ENSP00000401197.2:p.Glu1299Lys
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3712G>A
  hgvsp: ENSP00000381872.2:p.Glu1238Lys
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.3016G>A
  hgvsp: ENSP00000381870.1:p.Glu1006Lys
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3712G>A
  hgvsp: ENSP00000381867.3:p.Glu1238Lys
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3343
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8107
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4689
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7471
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8165
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3514
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu1299Lys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

3-49147755-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147755
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147755
    reference: chr 3
allele count: 2
allele frequency: 1.735237467247393e-5
allele num: 115258
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3711C>T
  hgvsp: ENST00000398892.3:c.3711C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.249C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.3015C>T
  hgvsp: ENST00000398896.1:c.3015C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3711C>T
  hgvsp: ENST00000398898.2:c.3711C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3591C>T
  hgvsp: ENST00000398888.2:c.3591C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3894C>T
  hgvsp: ENST00000434032.2:c.3894C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3900C>T
  hgvsp: ENST00000417901.1:c.3900C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3864C>T
  hgvsp: ENST00000453664.1:c.3864C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7472
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7245
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6192
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2915
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4567
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp1298Asp
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

3-49147760-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147760
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147760
    reference: chr 3
allele count: 31
allele frequency: 2.689478067740144e-4
allele num: 115264
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.244G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3706G>A
  hgvsp: ENSP00000381872.2:p.Val1236Ile
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3895G>A
  hgvsp: ENSP00000395260.1:p.Val1299Ile
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.3010G>A
  hgvsp: ENSP00000381870.1:p.Val1004Ile
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3859G>A
  hgvsp: ENSP00000400090.1:p.Val1287Ile
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3706G>A
  hgvsp: ENSP00000381867.3:p.Val1236Ile
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3586G>A
  hgvsp: ENSP00000381863.2:p.Val1196Ile
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3889G>A
  hgvsp: ENSP00000401197.2:p.Val1297Ile
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4686
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3344
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6190
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2417
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7465
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8104
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8163
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val1297Ile
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS

3-49147761-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147761
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147761
    reference: chr 3
allele count: 3
allele frequency: 2.603895427559629e-5
allele num: 115212
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.3009G>A
  hgvsp: ENST00000398896.1:c.3009G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3888G>A
  hgvsp: ENST00000434032.2:c.3888G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3858G>A
  hgvsp: ENST00000453664.1:c.3858G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3894G>A
  hgvsp: ENST00000417901.1:c.3894G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.243G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3705G>A
  hgvsp: ENST00000398898.2:c.3705G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3705G>A
  hgvsp: ENST00000398892.3:c.3705G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3585G>A
  hgvsp: ENST00000398888.2:c.3585G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8164
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8108
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4685
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6195
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7474
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4574
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25843
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3352
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr1296Thr
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP

3-49147762-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147762
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147762
    reference: chr 3
allele count: 4
allele frequency: 3.470474934494785e-5
allele num: 115258
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3857C>T
  hgvsp: ENSP00000400090.1:p.Thr1286Met
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.242C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3887C>T
  hgvsp: ENSP00000401197.2:p.Thr1296Met
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.3008C>T
  hgvsp: ENSP00000381870.1:p.Thr1003Met
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3704C>T
  hgvsp: ENSP00000381872.2:p.Thr1235Met
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3704C>T
  hgvsp: ENSP00000381867.3:p.Thr1235Met
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3893C>T
  hgvsp: ENSP00000395260.1:p.Thr1298Met
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3584C>T
  hgvsp: ENSP00000381863.2:p.Thr1195Met
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7473
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6195
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4425
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4685
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8163
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7222
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8099
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3340
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3578
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25844
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 8564
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr1296Met
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS

3-49147763-TTGTCACTGTGC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147763
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147752
    reference: chr 3
allele count: 1
allele frequency: 8.673177331783726e-6
allele num: 115298
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsp: ENSP00000381870.1:p.Ser999AsnfsTer34
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsp: ENSP00000400090.1:p.Ser1282AsnfsTer34
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsp: ENSP00000381863.2:p.Ser1191AsnfsTer34
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsp: ENSP00000381867.3:p.Ser1231AsnfsTer34
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsp: ENSP00000381872.2:p.Ser1231AsnfsTer34
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsp: ENSP00000401197.2:p.Ser1292AsnfsTer34
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsp: ENSP00000395260.1:p.Ser1294AsnfsTer34
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 4443
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4685
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7212
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7469
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2422
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25841
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4581
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3204
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8622
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3578
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser1292AsnfsTer34
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: TTGTCACTGTGC
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD

3-49147771-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147771
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147771
    reference: chr 3
allele count: 1
allele frequency: 8.682515150988938e-6
allele num: 115174
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.233C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3848C>T
  hgvsp: ENSP00000400090.1:p.Thr1283Ile
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3695C>T
  hgvsp: ENSP00000381872.2:p.Thr1232Ile
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3884C>T
  hgvsp: ENSP00000395260.1:p.Thr1295Ile
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2999C>T
  hgvsp: ENSP00000381870.1:p.Thr1000Ile
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3575C>T
  hgvsp: ENSP00000381863.2:p.Thr1192Ile
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3695C>T
  hgvsp: ENSP00000381867.3:p.Thr1232Ile
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3878C>T
  hgvsp: ENSP00000401197.2:p.Thr1293Ile
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4314
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8094
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7237
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3338
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4687
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7467
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3563
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3182
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4581
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr1293Ile
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

3-49147795-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147795
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147795
    reference: chr 3
allele count: 2
allele frequency: 1.744013673067197e-5
allele num: 114678
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3824G>A
  hgvsp: ENSP00000400090.1:p.Gly1275Asp
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3671G>A
  hgvsp: ENSP00000381872.2:p.Gly1224Asp
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3551G>A
  hgvsp: ENSP00000381863.2:p.Gly1184Asp
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3860G>A
  hgvsp: ENSP00000395260.1:p.Gly1287Asp
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3671G>A
  hgvsp: ENSP00000381867.3:p.Gly1224Asp
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3854G>A
  hgvsp: ENSP00000401197.2:p.Gly1285Asp
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.209G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2975G>A
  hgvsp: ENSP00000381870.1:p.Gly992Asp
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8152
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4170
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3338
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1964
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8067
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7473
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4685
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6187
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2949
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3549
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly1285Asp
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff

3-49147802-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147802
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147802
    reference: chr 3
allele count: 1
allele frequency: 8.727374282173466e-6
allele num: 114582
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3671-7G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.209-7G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3551-7G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2975-7G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3854-7G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3860-7G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3824-7G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3671-7G>C
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4170
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4685
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8153
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3338
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7470
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8059
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6190
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7233
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25825
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3549
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
hgvs: c.3854-7G>C
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

3-49147804-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147804
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147804
    reference: chr 3
allele count: 3
allele frequency: 2.614698089527263e-5
allele num: 114736
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2975-9C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3671-9C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3860-9C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3854-9C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3551-9C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3671-9C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.209-9C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3824-9C>T
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4686
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7224
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7469
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8061
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6192
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3343
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2896
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

3-49147806-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147806
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147806
    reference: chr 3
allele count: 1
allele frequency: 8.716723906486986e-6
allele num: 114722
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3671-11C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.209-11C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3854-11C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3671-11C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3860-11C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3551-11C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2975-11C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3824-11C>T
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6190
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8152
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4684
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8058
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7211
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7463
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2598
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4208
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25822
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4551
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

3-49147809-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147809
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147809
    reference: chr 3
allele count: 2
allele frequency: 1.742494206206765e-5
allele num: 114778
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3854-14C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.209-14C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2975-14C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3671-14C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3551-14C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3671-14C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3824-14C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3860-14C>T
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4684
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8050
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7238
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6189
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2897
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8382
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3343
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2912
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25818
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

3-49147810-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147810
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147809
    reference: chr 3
allele count: 6
allele frequency: 5.224842383921418e-5
allele num: 114836
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2975-16delT
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3824-16delT
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3671-16delT
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3860-16delT
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3551-16delT
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3671-16delT
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.209-16delT
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3854-16delT
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4683
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7459
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2540
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8055
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7241
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3555
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3340
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2479
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: GA
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

3-49147813-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147813
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147813
    reference: chr 3
allele count: 1
allele frequency: 8.701251239928301e-6
allele num: 114926
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3824-18C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.209-18C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3671-18C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3551-18C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3854-18C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3671-18C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2975-18C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3860-18C>T
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8063
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4304
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7244
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2545
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4684
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6190
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25820
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2904
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3339
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

3-49147815-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147815
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147815
    reference: chr 3
allele count: 2
allele frequency: 1.740219963803425e-5
allele num: 114928
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3854-20C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3671-20C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3824-20C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3860-20C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.209-20C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3551-20C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3671-20C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2975-20C>T
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8152
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2550
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3338
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8062
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6192
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4684
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3546
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3337
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25820
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2479
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

3-49147843-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147843
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147843
    reference: chr 3
allele count: 3
allele frequency: 2.568977033345322e-5
allele num: 116778
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3670+34A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2974+34A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3670+34A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3859+34A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3823+34A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3550+34A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.208+34A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3853+34A>G
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7436
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6186
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5231
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8163
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4683
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8081
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ

3-49147848-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147848
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147848
    reference: chr 3
allele count: 1
allele frequency: 8.536064874093044e-6
allele num: 117150
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3853+29G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3859+29G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3823+29G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3670+29G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2974+29G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3550+29G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3670+29G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.208+29G>A
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6186
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7516
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5644
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4683
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8088
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8168
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2221
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9886
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

3-49147849-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147849
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147849
    reference: chr 3
allele count: 20
allele frequency: 1.70543693294222e-4
allele num: 117272
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3670+28G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3670+28G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3550+28G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3859+28G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2974+28G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.208+28G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3853+28G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3823+28G>C
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7542
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8090
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6187
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5714
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4682
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3340
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7451
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2184
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9963
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4711
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3577
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

3-49147853-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147853
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147853
    reference: chr 3
allele count: 1
allele frequency: 8.504847763225038e-6
allele num: 117580
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3823+24G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3670+24G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3670+24G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2974+24G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3550+24G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.208+24G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3859+24G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3853+24G>A
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7452
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6188
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3340
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7607
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4681
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5977
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8172
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8101
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2008
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3534
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25813
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

3-49147857-C-CTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147857
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147859
    reference: chr 3
allele count: 1
allele frequency: 8.472565831836514e-6
allele num: 118028
alternate allele: CTG
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3853+18_3853+19dupCA
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.208+18_208+19dupCA
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3823+18_3823+19dupCA
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2974+18_2974+19dupCA
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3550+18_3550+19dupCA
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3670+18_3670+19dupCA
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3670+18_3670+19dupCA
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3859+18_3859+19dupCA
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8115
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7701
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8176
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3340
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6188
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6277
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7452
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4681
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3344
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10548
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2481
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

3-49147861-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147861
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147861
    reference: chr 3
allele count: 3
allele frequency: 2.535325535798797e-5
allele num: 118328
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.208+16G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3670+16G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3550+16G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3823+16G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3670+16G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3853+16G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3859+16G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2974+16G>A
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7804
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8176
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6474
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3340
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7452
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4681
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6190
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10784
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum

3-49147868-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147868
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147868
    reference: chr 3
allele count: 11
allele frequency: 9.259415141669052e-5
allele num: 118798
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3823+9A>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2974+9A>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3859+9A>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3550+9A>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.208+9A>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3853+9A>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3670+9A>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3670+9A>C
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6189
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8135
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6884
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8171
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4681
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3340
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3541
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2482
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

3-49147874-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147874
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147874
    reference: chr 3
allele count: 1
allele frequency: 8.390810384466932e-6
allele num: 119178
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3859+3G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.208+3G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3670+3G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3670+3G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2974+3G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3550+3G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3853+3G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3823+3G>A
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6192
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8173
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4683
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7451
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
hgvs: c.3853+3G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum

3-49147880-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147880
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147880
    reference: chr 3
allele count: 2
allele frequency: 1.671486118307788e-5
allele num: 119654
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2971G>A
  hgvsp: ENSP00000381870.1:p.Val991Met
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3820G>A
  hgvsp: ENSP00000400090.1:p.Val1274Met
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3547G>A
  hgvsp: ENSP00000381863.2:p.Val1183Met
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3667G>A
  hgvsp: ENSP00000381872.2:p.Val1223Met
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3850G>A
  hgvsp: ENSP00000401197.2:p.Val1284Met
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.205G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3856G>A
  hgvsp: ENSP00000395260.1:p.Val1286Met
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3667G>A
  hgvsp: ENSP00000381867.3:p.Val1223Met
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4683
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8227
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3026
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3625
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3346
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val1284Met
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

3-49147881-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147881
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147881
    reference: chr 3
allele count: 3
allele frequency: 2.50434085748631e-5
allele num: 119792
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3666C>T
  hgvsp: ENST00000398892.3:c.3666C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3546C>T
  hgvsp: ENST00000398888.2:c.3546C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3849C>T
  hgvsp: ENST00000434032.2:c.3849C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3666C>T
  hgvsp: ENST00000398898.2:c.3666C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3819C>T
  hgvsp: ENST00000453664.1:c.3819C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.204C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2970C>T
  hgvsp: ENST00000398896.1:c.2970C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3855C>T
  hgvsp: ENST00000417901.1:c.3855C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8167
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7284
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3340
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4683
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8220
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3543
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25817
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Asp1283Asp
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-49147888-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147888
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147888
    reference: chr 3
allele count: 1
allele frequency: 8.32639467110741e-6
allele num: 120100
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3659G>A
  hgvsp: ENSP00000381867.3:p.Arg1220His
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3848G>A
  hgvsp: ENSP00000395260.1:p.Arg1283His
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2963G>A
  hgvsp: ENSP00000381870.1:p.Arg988His
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3659G>A
  hgvsp: ENSP00000381872.2:p.Arg1220His
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3812G>A
  hgvsp: ENSP00000400090.1:p.Arg1271His
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3539G>A
  hgvsp: ENSP00000381863.2:p.Arg1180His
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3842G>A
  hgvsp: ENSP00000401197.2:p.Arg1281His
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.197G>A
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7423
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8614
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7459
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8260
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4682
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3032
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3344
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg1281His
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

3-49147889-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147889
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147889
    reference: chr 3
allele count: 6
allele frequency: 4.992095848240287e-5
allele num: 120190
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.196C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3658C>T
  hgvsp: ENSP00000381867.3:p.Arg1220Cys
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3847C>T
  hgvsp: ENSP00000395260.1:p.Arg1283Cys
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3658C>T
  hgvsp: ENSP00000381872.2:p.Arg1220Cys
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3811C>T
  hgvsp: ENSP00000400090.1:p.Arg1271Cys
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3538C>T
  hgvsp: ENSP00000381863.2:p.Arg1180Cys
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3841C>T
  hgvsp: ENSP00000401197.2:p.Arg1281Cys
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2962C>T
  hgvsp: ENSP00000381870.1:p.Arg988Cys
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8650
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3338
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7455
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4682
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7467
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8171
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5088
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12564
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg1281Cys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/3-49147897-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147897
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147897
    reference: chr 3
allele count: 38
allele frequency: 3.153998107601136e-4
allele num: 120482
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3650G>T
  hgvsp: ENSP00000381867.3:p.Ser1217Ile
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3803G>T
  hgvsp: ENSP00000400090.1:p.Ser1268Ile
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3839G>T
  hgvsp: ENSP00000395260.1:p.Ser1280Ile
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2954G>T
  hgvsp: ENSP00000381870.1:p.Ser985Ile
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3530G>T
  hgvsp: ENSP00000381863.2:p.Ser1177Ile
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3650G>T
  hgvsp: ENSP00000381872.2:p.Ser1217Ile
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.188G>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3833G>T
  hgvsp: ENSP00000401197.2:p.Ser1278Ile
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3340
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7452
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8176
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8788
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8286
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7578
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6188
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3638
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12830
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3345
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2488
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser1278Ile
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

3-49147906-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147906
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147906
    reference: chr 3
allele count: 2
allele frequency: 1.6583472910897e-5
allele num: 120602
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3521A>G
  hgvsp: ENSP00000381863.2:p.Asn1174Ser
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3794A>G
  hgvsp: ENSP00000400090.1:p.Asn1265Ser
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3824A>G
  hgvsp: ENSP00000401197.2:p.Asn1275Ser
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3830A>G
  hgvsp: ENSP00000395260.1:p.Asn1277Ser
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3641A>G
  hgvsp: ENSP00000381872.2:p.Asn1214Ser
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3641A>G
  hgvsp: ENSP00000381867.3:p.Asn1214Ser
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.179A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2945A>G
  hgvsp: ENSP00000381870.1:p.Asn982Ser
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4682
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6196
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8901
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7631
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8171
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3338
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7453
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3347
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3059
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn1275Ser
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/3-49147920-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147920
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147920
    reference: chr 3
allele count: 1
allele frequency: 8.287475966319697e-6
allele num: 120664
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3810T>G
  hgvsp: ENSP00000401197.2:p.Cys1270Trp
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3780T>G
  hgvsp: ENSP00000400090.1:p.Cys1260Trp
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3816T>G
  hgvsp: ENSP00000395260.1:p.Cys1272Trp
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3627T>G
  hgvsp: ENSP00000381872.2:p.Cys1209Trp
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2931T>G
  hgvsp: ENSP00000381870.1:p.Cys977Trp
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.165T>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3507T>G
  hgvsp: ENSP00000381863.2:p.Cys1169Trp
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3627T>G
  hgvsp: ENSP00000381867.3:p.Cys1209Trp
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8963
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7639
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8294
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7453
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8171
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6196
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3338
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4682
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Cys1270Trp
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

3-49147938-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147938
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147938
    reference: chr 3
allele count: 1
allele frequency: 8.287201246395068e-6
allele num: 120668
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2913T>C
  hgvsp: ENST00000398896.1:c.2913T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3609T>C
  hgvsp: ENST00000398892.3:c.3609T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3609T>C
  hgvsp: ENST00000398898.2:c.3609T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3489T>C
  hgvsp: ENST00000398888.2:c.3489T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3798T>C
  hgvsp: ENST00000417901.1:c.3798T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3792T>C
  hgvsp: ENST00000434032.2:c.3792T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3762T>C
  hgvsp: ENST00000453664.1:c.3762T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.147T>C
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8171
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7454
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6195
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4682
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7615
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3348
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5171
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2490
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly1264Gly
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD

http://identifiers.org/exac.variant/3-49147948-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147948
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147948
    reference: chr 3
allele count: 1
allele frequency: 8.287613333112331e-6
allele num: 120662
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.137G>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3788G>T
  hgvsp: ENSP00000395260.1:p.Gly1263Val
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3599G>T
  hgvsp: ENSP00000381872.2:p.Gly1200Val
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3599G>T
  hgvsp: ENSP00000381867.3:p.Gly1200Val
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3782G>T
  hgvsp: ENSP00000401197.2:p.Gly1261Val
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2903G>T
  hgvsp: ENSP00000381870.1:p.Gly968Val
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3752G>T
  hgvsp: ENSP00000400090.1:p.Gly1251Val
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3479G>T
  hgvsp: ENSP00000381863.2:p.Gly1160Val
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4682
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3338
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6195
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7454
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7596
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8176
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8971
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13071
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25812
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly1261Val
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

3-49147961-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147961
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147961
    reference: chr 3
allele count: 1
allele frequency: 8.289262089888757e-6
allele num: 120638
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3586A>C
  hgvsp: ENSP00000381872.2:p.Asn1196His
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3466A>C
  hgvsp: ENSP00000381863.2:p.Asn1156His
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3775A>C
  hgvsp: ENSP00000395260.1:p.Asn1259His
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2890A>C
  hgvsp: ENSP00000381870.1:p.Asn964His
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3769A>C
  hgvsp: ENSP00000401197.2:p.Asn1257His
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.124A>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3739A>C
  hgvsp: ENSP00000400090.1:p.Asn1247His
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3586A>C
  hgvsp: ENSP00000381867.3:p.Asn1196His
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6196
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4682
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7586
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8956
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7453
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8176
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3348
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5171
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asn1257His
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-49147979-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147979
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147979
    reference: chr 3
allele count: 1
allele frequency: 8.293524416135881e-6
allele num: 120576
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3448G>C
  hgvsp: ENSP00000381863.2:p.Asp1150His
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.106G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3721G>C
  hgvsp: ENSP00000400090.1:p.Asp1241His
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3568G>C
  hgvsp: ENSP00000381872.2:p.Asp1190His
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3568G>C
  hgvsp: ENSP00000381867.3:p.Asp1190His
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3751G>C
  hgvsp: ENSP00000401197.2:p.Asp1251His
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3757G>C
  hgvsp: ENSP00000395260.1:p.Asp1253His
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2872G>C
  hgvsp: ENSP00000381870.1:p.Asp958His
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8168
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6197
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4682
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3338
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3050
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12801
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp1251His
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

3-49147980-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147980
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147980
    reference: chr 3
allele count: 2
allele frequency: 1.658814942605003e-5
allele num: 120568
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2871C>T
  hgvsp: ENST00000398896.1:c.2871C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3447C>T
  hgvsp: ENST00000398888.2:c.3447C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3567C>T
  hgvsp: ENST00000398892.3:c.3567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3756C>T
  hgvsp: ENST00000417901.1:c.3756C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3750C>T
  hgvsp: ENST00000434032.2:c.3750C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3567C>T
  hgvsp: ENST00000398898.2:c.3567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3720C>T
  hgvsp: ENST00000453664.1:c.3720C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.105C>T
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8168
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8885
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8295
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7501
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4682
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3545
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr1250Tyr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

3-49147983-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147983
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147983
    reference: chr 3
allele count: 1
allele frequency: 8.295588406085643e-6
allele num: 120546
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3444C>T
  hgvsp: ENST00000398888.2:c.3444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3564C>T
  hgvsp: ENST00000398892.3:c.3564C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3753C>T
  hgvsp: ENST00000417901.1:c.3753C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3747C>T
  hgvsp: ENST00000434032.2:c.3747C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2868C>T
  hgvsp: ENST00000398896.1:c.2868C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3564C>T
  hgvsp: ENST00000398898.2:c.3564C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3717C>T
  hgvsp: ENST00000453664.1:c.3717C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.102C>T
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 8282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7470
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6196
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4681
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8867
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8169
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25808
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3048
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser1249Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

3-49147992-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49147992
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49147992
    reference: chr 3
allele count: 4
allele frequency: 3.319061369444721e-5
allele num: 120516
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3555G>A
  hgvsp: ENST00000398892.3:c.3555G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3435G>A
  hgvsp: ENST00000398888.2:c.3435G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3708G>A
  hgvsp: ENST00000453664.1:c.3708G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2859G>A
  hgvsp: ENST00000398896.1:c.2859G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3555G>A
  hgvsp: ENST00000398898.2:c.3555G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3738G>A
  hgvsp: ENST00000434032.2:c.3738G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.93G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3744G>A
  hgvsp: ENST00000417901.1:c.3744G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6199
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8264
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4681
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8159
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7445
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3340
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln1246Gln
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/3-49148007-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49148007
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49148007
    reference: chr 3
allele count: 1
allele frequency: 8.304820117596252e-6
allele num: 120412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3693T>G
  hgvsp: ENST00000453664.1:c.3693T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3540T>G
  hgvsp: ENST00000398892.3:c.3540T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3723T>G
  hgvsp: ENST00000434032.2:c.3723T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3540T>G
  hgvsp: ENST00000398898.2:c.3540T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2844T>G
  hgvsp: ENST00000398896.1:c.2844T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3729T>G
  hgvsp: ENST00000417901.1:c.3729T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3420T>G
  hgvsp: ENST00000398888.2:c.3420T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.78T>G
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8704
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7429
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7290
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3336
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8231
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8157
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3334
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5041
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3611
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12357
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly1241Gly
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: A
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

3-49148011-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49148011
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49148011
    reference: chr 3
allele count: 1
allele frequency: 8.306613725848521e-6
allele num: 120386
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.74T>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3725T>C
  hgvsp: ENSP00000395260.1:p.Ile1242Thr
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3416T>C
  hgvsp: ENSP00000381863.2:p.Ile1139Thr
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3719T>C
  hgvsp: ENSP00000401197.2:p.Ile1240Thr
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2840T>C
  hgvsp: ENSP00000381870.1:p.Ile947Thr
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3536T>C
  hgvsp: ENSP00000381872.2:p.Ile1179Thr
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3536T>C
  hgvsp: ENSP00000381867.3:p.Ile1179Thr
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3689T>C
  hgvsp: ENSP00000400090.1:p.Ile1230Thr
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6197
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3336
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8228
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8672
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7225
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3031
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3540
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile1240Thr
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

3-49148019-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49148019
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49148019
    reference: chr 3
allele count: 1
allele frequency: 8.312966565248474e-6
allele num: 120294
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3408G>C
  hgvsp: ENSP00000381863.2:p.Lys1136Asn
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.66G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2832G>C
  hgvsp: ENSP00000381870.1:p.Lys944Asn
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3528G>C
  hgvsp: ENSP00000381867.3:p.Lys1176Asn
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3711G>C
  hgvsp: ENSP00000401197.2:p.Lys1237Asn
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3681G>C
  hgvsp: ENSP00000400090.1:p.Lys1227Asn
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3717G>C
  hgvsp: ENSP00000395260.1:p.Lys1239Asn
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3528G>C
  hgvsp: ENSP00000381872.2:p.Lys1176Asn
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8531
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3336
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6998
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6196
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3035
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3602
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4992
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Lys1237Asn
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD

3-49148037-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49148037
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49148037
    reference: chr 3
allele count: 2
allele frequency: 1.665278934221482e-5
allele num: 120100
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2814G>C
  hgvsp: ENSP00000381870.1:p.Arg938Ser
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3663G>C
  hgvsp: ENSP00000400090.1:p.Arg1221Ser
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.48G>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3510G>C
  hgvsp: ENSP00000381867.3:p.Arg1170Ser
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3390G>C
  hgvsp: ENSP00000381863.2:p.Arg1130Ser
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3693G>C
  hgvsp: ENSP00000401197.2:p.Arg1231Ser
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3699G>C
  hgvsp: ENSP00000395260.1:p.Arg1233Ser
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3510G>C
  hgvsp: ENSP00000381872.2:p.Arg1170Ser
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4682
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8197
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7413
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6408
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8062
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10862
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg1231Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/3-49148042-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49148042
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49148042
    reference: chr 3
allele count: 1
allele frequency: 8.329030001166064e-6
allele num: 120062
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.48-5T>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2814-5T>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3510-5T>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3663-5T>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3693-5T>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3510-5T>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3390-5T>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3699-5T>G
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8038
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6284
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4681
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8024
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2471
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3517
  bin: 8.25e1
  variant carriers: 0
hgvs: c.3693-5T>G
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

3-49148044-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49148044
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49148044
    reference: chr 3
allele count: 5
allele frequency: 4.167361226871145e-5
allele num: 119980
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2814-7C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3663-7C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.48-7C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3510-7C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3390-7C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3699-7C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3510-7C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3693-7C>T
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8148
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8083
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5903
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7413
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6195
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2950
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3508
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3324
  bin: 9.25e1
  variant carriers: 0
hgvs: c.3693-7C>T
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD

3-49148045-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49148045
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49148045
    reference: chr 3
allele count: 2
allele frequency: 1.666583337499792e-5
allele num: 120006
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3510-8A>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3693-8A>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3390-8A>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3663-8A>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2814-8A>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3510-8A>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.48-8A>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3699-8A>T
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8045
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8145
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6194
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5937
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2474
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25791
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 5.25e1
  variant carriers: 0
hgvs: c.3693-8A>T
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

3-49148060-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49148060
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49148060
    reference: chr 3
allele count: 1
allele frequency: 8.34125752798492e-6
allele num: 119886
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3693-23C>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3390-23C>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3510-23C>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2814-23C>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3699-23C>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3663-23C>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.48-23C>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3510-23C>G
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7992
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7421
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3331
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25801
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9311
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4498
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD

3-49148063-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49148063
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49148063
    reference: chr 3
allele count: 1
allele frequency: 8.348499774590506e-6
allele num: 119782
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3390-26C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2814-26C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3699-26C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3510-26C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.48-26C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3693-26C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3663-26C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3510-26C>T
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7349
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5689
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6197
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4684
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3617
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1111
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3330
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

3-49148080-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49148080
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49148080
    reference: chr 3
allele count: 260
allele frequency: 2.172133201891427e-3
allele num: 119698
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2814-43C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3699-43C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.48-43C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3510-43C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3390-43C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3510-43C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3663-43C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3693-43C>T
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7453
  bin: 4.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 8140
  bin: 3.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 4704
  bin: 5.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6222
  bin: 4.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 5483
  bin: 2.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 7139
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 5.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 6.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8196
  bin: 3.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2982
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3722
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3628
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.25e1
  variant carriers: 1
num of homozygotes: 7
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum

3-49148082-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49148082
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49148082
    reference: chr 3
allele count: 2
allele frequency: 1.673416111650323e-5
allele num: 119516
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3693-45G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3510-45G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2814-45G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3663-45G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3699-45G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3510-45G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.48-45G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3390-45G>A
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7469
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7096
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6228
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8175
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3364
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3734
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8110
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

3-49148083-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49148083
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49148083
    reference: chr 3
allele count: 92
allele frequency: 7.690764395104662e-4
allele num: 119624
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3699-46C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2814-46C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3510-46C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3693-46C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3390-46C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.48-46C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3663-46C>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3510-46C>T
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8192
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6248
  bin: 4.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7090
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8202
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3372
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 7476
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5520
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2989
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4417
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3751
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD

3-49148106-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49148106
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49148106
    reference: chr 3
allele count: 1
allele frequency: 8.343763037129745e-6
allele num: 119850
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3509+38A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3692+38A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.47+38A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2813+38A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3698+38A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3662+38A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3389+38A>G
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3509+38A>G
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6159
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7893
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8329
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9191
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7699
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5668
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23750
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3892
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

3-49148109-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49148109
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49148109
    reference: chr 3
allele count: 1
allele frequency: 8.346966712296751e-6
allele num: 119804
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3662+35G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3509+35G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2813+35G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3509+35G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3389+35G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3692+35G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.47+35G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3698+35G>A
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7921
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7699
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8331
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3081
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4189
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3892
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2386
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5649
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum

3-49148111-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49148111
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49148111
    reference: chr 3
allele count: 2
allele frequency: 1.669003271246412e-5
allele num: 119832
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3698+33G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3509+33G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2813+33G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3509+33G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3692+33G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.47+33G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3389+33G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3662+33G>A
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7701
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6158
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7967
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8329
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4674
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3097
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5675
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3900
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/3-49148112-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49148112
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49148112
    reference: chr 3
allele count: 1
allele frequency: 8.346548702111677e-6
allele num: 119810
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3698+32G>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2813+32G>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3509+32G>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.47+32G>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3692+32G>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3509+32G>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3389+32G>T
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3662+32G>T
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8332
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7999
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7698
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5675
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3105
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4194
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2383
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ

3-49148115-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49148115
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49148115
    reference: chr 3
allele count: 1
allele frequency: 8.340283569641367e-6
allele num: 119900
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3692+29T>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3698+29T>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2813+29T>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3509+29T>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3509+29T>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3389+29T>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3662+29T>C
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.47+29T>C
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8330
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8022
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7703
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4673
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9248
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3917
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2391
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
reference allele: A
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

3-49148126-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49148126
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49148126
    reference: chr 3
allele count: 2
allele frequency: 1.666527789350887e-5
allele num: 120010
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000400090
  ensembl transcript: ENST00000453664
  gene symbol: USP19
  hgvsc: ENST00000453664.1:c.3662+18G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000395260
  ensembl transcript: ENST00000417901
  gene symbol: USP19
  hgvsc: ENST00000417901.1:c.3698+18G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381863
  ensembl transcript: ENST00000398888
  gene symbol: USP19
  hgvsc: ENST00000398888.2:c.3389+18G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381870
  ensembl transcript: ENST00000398896
  gene symbol: USP19
  hgvsc: ENST00000398896.1:c.2813+18G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000401197
  ensembl transcript: ENST00000434032
  gene symbol: USP19
  hgvsc: ENST00000434032.2:c.3692+18G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl transcript: ENST00000483667
  gene symbol: USP19
  hgvsc: ENST00000483667.1:n.47+18G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381867
  ensembl transcript: ENST00000398892
  gene symbol: USP19
  hgvsc: ENST00000398892.3:c.3509+18G>A
  variant of: http://identifiers.org/hgnc/12617
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172046
  ensembl protein: ENSP00000381872
  ensembl transcript: ENST00000398898
  gene symbol: USP19
  hgvsc: ENST00000398898.2:c.3509+18G>A
  variant of: http://identifiers.org/hgnc/12617
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4672
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8340
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7708
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 25866
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8244
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4553
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3824
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3582
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2930
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3365
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.558166349839509e-5
allele num: 64178
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10078
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.745e0

VQSLOD
type: SiteQuality
SIO_000300: -1.055e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.53e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e0

DP
type: SiteQuality
SIO_000300: 2.310882e6

FS
type: SiteQuality
SIO_000300: 2.701e0

MQRankSum
type: SiteQuality
SIO_000300: 1.51e0

QD
type: SiteQuality
SIO_000300: 1.205e1

MQ
type: SiteQuality
SIO_000300: 5.943e1

GenotypeQuality
all individuals: 3826
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4562
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25868
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3584
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2488
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3524
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2931
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.557486839236208e-5
allele num: 64206
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10156
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.791e0

VQSLOD
type: SiteQuality
SIO_000300: -4.023e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

QD
type: SiteQuality
SIO_000300: 8.9e0

DP
type: SiteQuality
SIO_000300: 2.311855e6

MQ
type: SiteQuality
SIO_000300: 5.89e1

FS
type: SiteQuality
SIO_000300: 2.4708e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e-1

GenotypeQuality
all individuals: 3592
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2927
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25866
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3523
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3785
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3367
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4563
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64354
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166861143523921e-4
allele num: 8570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.138e0

VQSLOD
type: SiteQuality
SIO_000300: 2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 2.317027e6

MQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

QD
type: SiteQuality
SIO_000300: 9.25e0

FS
type: SiteQuality
SIO_000300: 3.473e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

GenotypeQuality
all individuals: 69
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8596
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3366
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3585
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3518
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4573
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.839249586168843e-4
allele num: 10874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64468
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.09e-1

DP
type: SiteQuality
SIO_000300: 2.322071e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.599e0

FS
type: SiteQuality
SIO_000300: 3.123e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

MQRankSum
type: SiteQuality
SIO_000300: 8.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-2

QD
type: SiteQuality
SIO_000300: 1.097e1

GenotypeQuality
all individuals: 100
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3590
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2486
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2927
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3367
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4605
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.975049362771496e-5
allele num: 11142
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.324256e6

MQ
type: SiteQuality
SIO_000300: 5.974e1

QD
type: SiteQuality
SIO_000300: 1.527e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.25e0

FS
type: SiteQuality
SIO_000300: 9.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.321e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.03e0

VQSLOD
type: SiteQuality
SIO_000300: -1.002e0

MQRankSum
type: SiteQuality
SIO_000300: 2.17e0

GenotypeQuality
all individuals: 3521
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3592
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8815
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2930
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3367
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25867
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 75
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4600
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.547556408431087e-5
allele num: 64618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11250
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.253e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.306e0

VQSLOD
type: SiteQuality
SIO_000300: -2.915e-1

DP
type: SiteQuality
SIO_000300: 2.325463e6

MQRankSum
type: SiteQuality
SIO_000300: -9.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.2e-1

QD
type: SiteQuality
SIO_000300: 1.272e1

GenotypeQuality
all individuals: 2930
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4615
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.844861135680169e-5
allele num: 11306
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64642
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.385e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

FS
type: SiteQuality
SIO_000300: 4.31e0

DP
type: SiteQuality
SIO_000300: 2.326666e6

VQSLOD
type: SiteQuality
SIO_000300: -2.897e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 7.76e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

GenotypeQuality
all individuals: 94
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
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variant carriers: 0

GenotypeQuality
all individuals: 8948
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.545451735542299e-5
allele num: 64706
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

DP
type: SiteQuality
SIO_000300: 2.327901e6

VQSLOD
type: SiteQuality
SIO_000300: -7.181e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.11e0

QD
type: SiteQuality
SIO_000300: 1.155e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

FS
type: SiteQuality
SIO_000300: 9.195e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.942e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.069e0

GenotypeQuality
all individuals: 96
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
all individuals: 3371
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.034126163391934e-4
allele num: 9670
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64830
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11776
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.34e0

VQSLOD
type: SiteQuality
SIO_000300: 7.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.119e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-1

MQ
type: SiteQuality
SIO_000300: 5.351e1

DP
type: SiteQuality
SIO_000300: 2.331721e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.813e0

QD
type: SiteQuality
SIO_000300: 5.42e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3592
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9680
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12386
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.818012566907144e-4
allele num: 8594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536428725071444e-5
allele num: 65086
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.53e1

MQRankSum
type: SiteQuality
SIO_000300: 3.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.976e0

FS
type: SiteQuality
SIO_000300: 6.246e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

DP
type: SiteQuality
SIO_000300: 2.338467e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-3

GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3595
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65100
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9680
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.816658911121452e-4
allele num: 8596
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.978e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.929e0

VQSLOD
type: SiteQuality
SIO_000300: 2.1e-2

MQRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.749e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.92e-1

DP
type: SiteQuality
SIO_000300: 2.338948e6

FS
type: SiteQuality
SIO_000300: 1.947e0

GenotypeQuality
all individuals: 34
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.602050624799744e-4
allele num: 12484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9682
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65110
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.749e0

DP
type: SiteQuality
SIO_000300: 2.339418e6

FS
type: SiteQuality
SIO_000300: 1.4606e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.96e-1

QD
type: SiteQuality
SIO_000300: 1.352e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4634
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.031991744066047e-4
allele num: 9690
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65144
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.3e0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -4.012e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.532e0

FS
type: SiteQuality
SIO_000300: 1.9576e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.76e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.34e-2

DP
type: SiteQuality
SIO_000300: 2.340657e6

MQRankSum
type: SiteQuality
SIO_000300: -1.23e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 118
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9718
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65246
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.542495758136665e-4
allele num: 12966
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.340855e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

MQ
type: SiteQuality
SIO_000300: 5.948e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.49e-1

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.15e-1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4614
bin: 6.75e1
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GenotypeQuality
all individuals: 2487
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9720
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.723200494284832e-5
allele num: 12948
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.67e-1

FS
type: SiteQuality
SIO_000300: 4.142e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.51e-1

QD
type: SiteQuality
SIO_000300: 1.342e1

MQ
type: SiteQuality
SIO_000300: 5.961e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e0

DP
type: SiteQuality
SIO_000300: 2.339554e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

GenotypeQuality
all individuals: 124
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3577
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.53275497378989e-5
allele num: 65242
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9720
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 7.16e0

DP
type: SiteQuality
SIO_000300: 2.333454e6

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 2.263e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.851e0

VQSLOD
type: SiteQuality
SIO_000300: -5.645e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.63e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 130
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variant carriers: 0

GenotypeQuality
all individuals: 8686
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.145091582630171e-4
allele num: 9718
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.065791894046232e-5
allele num: 65236
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12862
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.04e-1

DP
type: SiteQuality
SIO_000300: 2.333009e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.02e-1

QD
type: SiteQuality
SIO_000300: 1.138e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

FS
type: SiteQuality
SIO_000300: 8.316000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 550
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2484
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3573
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8449
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12782
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9714
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.068143466388488e-5
allele num: 65186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.48e-1

DP
type: SiteQuality
SIO_000300: 2.331576e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.433e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.92e-1

QD
type: SiteQuality
SIO_000300: 1.071e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e-1

GenotypeQuality
all individuals: 3351
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 31

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2915
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variant carriers: 0

GenotypeQuality
all individuals: 2486
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 10
allele frequency: 8.682062858135093e-4
allele num: 11518
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.028594939312899e-4
allele num: 9722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 20
allele frequency: 3.068520052778545e-4
allele num: 65178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12780
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.0e0

DP
type: SiteQuality
SIO_000300: 2.331245e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.884e0

MQRankSum
type: SiteQuality
SIO_000300: -1.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e-2

QD
type: SiteQuality
SIO_000300: 1.244e1

MQ
type: SiteQuality
SIO_000300: 5.961e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2915
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9722
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.602780079167817e-5
allele num: 65178
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.749e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.4e-2

QD
type: SiteQuality
SIO_000300: 1.264e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.62e0

VQSLOD
type: SiteQuality
SIO_000300: -6.283e-1

FS
type: SiteQuality
SIO_000300: 3.516e0

MQRankSum
type: SiteQuality
SIO_000300: -3.42e-1

DP
type: SiteQuality
SIO_000300: 2.330853e6

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 192
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 79
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GenotypeQuality
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GenotypeQuality
all individuals: 71
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GenotypeQuality
all individuals: 136
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variant carriers: 0

GenotypeQuality
all individuals: 3354
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.02880658436214e-4
allele num: 9720
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.830853563038371e-5
allele num: 12770
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162250116225012e-4
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.534024667116647e-5
allele num: 65188
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

DP
type: SiteQuality
SIO_000300: 2.330035e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.385e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.6e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.06e-1

FS
type: SiteQuality
SIO_000300: 1.767e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.533742331288344e-5
allele num: 65200
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.55e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.415e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.585e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.67e-1

DP
type: SiteQuality
SIO_000300: 2.329827e6

MQ
type: SiteQuality
SIO_000300: 5.721e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.53e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 5.2e-1

GenotypeQuality
all individuals: 575
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2487
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 40
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GenotypeQuality
all individuals: 78
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GenotypeQuality
all individuals: 25838
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.688097306689835e-5
allele num: 11510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65180
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12706
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.142e0

FS
type: SiteQuality
SIO_000300: 7.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.96e0

VQSLOD
type: SiteQuality
SIO_000300: 2.78e-1

DP
type: SiteQuality
SIO_000300: 2.328179e6

MQRankSum
type: SiteQuality
SIO_000300: 3.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.021e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.033e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 123
bin: 2.5e0
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GenotypeQuality
all individuals: 98
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GenotypeQuality
all individuals: 4547
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GenotypeQuality
all individuals: 81
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GenotypeQuality
all individuals: 130
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2481
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65076
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.621533971136695e-4
allele num: 12334
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9714
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.32458e6

VQSLOD
type: SiteQuality
SIO_000300: 5.85e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.601e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.21e-1

QD
type: SiteQuality
SIO_000300: 1.159e1

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12258
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.029442042413012e-4
allele num: 9714
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65054
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.368e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

FS
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SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: 8.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.192e0

VQSLOD
type: SiteQuality
SIO_000300: 2.05e0

DP
type: SiteQuality
SIO_000300: 2.324848e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65088
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.423263327948304e-4
allele num: 12380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.34e-1

FS
type: SiteQuality
SIO_000300: 1.78e0

QD
type: SiteQuality
SIO_000300: 1.414e1

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 2.325063e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.028383381324558e-4
allele num: 9724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65086
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12362
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.177e0

MQRankSum
type: SiteQuality
SIO_000300: 1.14e-1

FS
type: SiteQuality
SIO_000300: 1.6521e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.6e-2

DP
type: SiteQuality
SIO_000300: 2.324891e6

MQ
type: SiteQuality
SIO_000300: 5.925e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.239e0

QD
type: SiteQuality
SIO_000300: 1.379e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.33e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 77
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.072951877573597e-5
allele num: 65084
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.325578e6

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

QD
type: SiteQuality
SIO_000300: 1.274e1

MQ
type: SiteQuality
SIO_000300: 5.956e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.55e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 111
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.028171910343409e-4
allele num: 9726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.679076053569234e-5
allele num: 65112
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -5.2e-2

MQ
type: SiteQuality
SIO_000300: 6.015e1

FS
type: SiteQuality
SIO_000300: 4.067e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.5e-1

QD
type: SiteQuality
SIO_000300: 1.309e1

MQRankSum
type: SiteQuality
SIO_000300: 8.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

DP
type: SiteQuality
SIO_000300: 2.325736e6

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.99488327470419e-5
allele num: 12508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9732
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65134
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.754e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.575e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.916e1

DP
type: SiteQuality
SIO_000300: 2.32677e6

FS
type: SiteQuality
SIO_000300: 5.637e0

VQSLOD
type: SiteQuality
SIO_000300: -1.184e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.89e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.535107918086642e-5
allele num: 65142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.003841844085161e-5
allele num: 12494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.666e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

FS
type: SiteQuality
SIO_000300: 6.76e-1

QD
type: SiteQuality
SIO_000300: 1.281e1

MQRankSum
type: SiteQuality
SIO_000300: 2.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e0

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 9.53e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2500
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.270612185546023e-5
allele num: 13754
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.73460537727667e-4
allele num: 11530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65620
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.005e0

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.03e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 25820
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.125552230297848e-5
allele num: 14034
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65700
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.71e0

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.350909e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: -4.868e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.41e-1

QD
type: SiteQuality
SIO_000300: 1.099e1

MQ
type: SiteQuality
SIO_000300: 5.904e1

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 20

GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 18
allele frequency: 2.090106827682304e-3
allele num: 8612
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.415428167020524e-4
allele num: 14130
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e-1

BaseQRankSum
type: SiteQuality
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QD
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VQSLOD
type: SiteQuality
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DP
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.851e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519572088499878e-5
allele num: 65808
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14348
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.356287e6

FS
type: SiteQuality
SIO_000300: 4.176e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.975e1

VQSLOD
type: SiteQuality
SIO_000300: 1.95e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e0

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.921e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9806
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.81384573453257e-5
allele num: 14676
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.295e1

FS
type: SiteQuality
SIO_000300: 1.3257e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -7.602e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.119e0

MQRankSum
type: SiteQuality
SIO_000300: 3.01e-1

MQ
type: SiteQuality
SIO_000300: 6.072e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.08e0

DP
type: SiteQuality
SIO_000300: 2.361791e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9806
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.662508662508663e-5
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.030394860450317e-5
allele num: 65998
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

QD
type: SiteQuality
SIO_000300: 1.331e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.4e-2

DP
type: SiteQuality
SIO_000300: 2.366329e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.829e0

VQSLOD
type: SiteQuality
SIO_000300: 4.28e0

MQ
type: SiteQuality
SIO_000300: 5.946e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 11

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9814
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.664548150838327e-4
allele num: 66084
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15242
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.03e-1

DP
type: SiteQuality
SIO_000300: 2.372886e6

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.157e0

MQRankSum
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.05e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66178
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15516
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.656509695290859e-5
allele num: 11552
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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DP
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VQSLOD
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ClippingRankSum
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FS
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
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allele frequency: 6.30596544330937e-5
allele num: 15858
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East Asian
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allele frequency: 0.0e0
allele num: 8618
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9826
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.508250128201261e-5
allele num: 66302
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 1
allele frequency: 6.268020559107433e-5
allele num: 15954
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66336
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.017501017501017e-4
allele num: 9828
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
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Other
type: Population
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East Asian
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
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FS
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DP
type: SiteQuality
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MQRankSum
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VQSLOD
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InbreedingCoeff
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MQ
type: SiteQuality
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QD
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25816
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 107
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9828
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505389293671343e-5
allele num: 66428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16148
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.06e0

QD
type: SiteQuality
SIO_000300: 1.304e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.79e-1

DP
type: SiteQuality
SIO_000300: 2.393763e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

GenotypeQuality
all individuals: 101
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2487
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25816
bin: 9.75e1
variant carriers: 6

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16218
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.017708121310808e-4
allele num: 9826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.019563581640331e-5
allele num: 66450
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.966e1

MQRankSum
type: SiteQuality
SIO_000300: 6.35e-1

FS
type: SiteQuality
SIO_000300: 5.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.36e-1

DP
type: SiteQuality
SIO_000300: 2.394835e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.52e-1

QD
type: SiteQuality
SIO_000300: 1.243e1

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 38

GenotypeQuality
all individuals: 46
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variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728608470181504e-4
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 35
allele frequency: 3.561253561253561e-3
allele num: 9828
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66552
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.118568232662192e-3
allele num: 894
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.759e0

FS
type: SiteQuality
SIO_000300: 1.731e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-2

DP
type: SiteQuality
SIO_000300: 2.400857e6

MQRankSum
type: SiteQuality
SIO_000300: 9.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.12e0

QD
type: SiteQuality
SIO_000300: 1.328e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9828
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.319647413593134e-4
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66590
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.329000000000001e0

DP
type: SiteQuality
SIO_000300: 2.400831e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.968e1

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

VQSLOD
type: SiteQuality
SIO_000300: 5.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.14e0

QD
type: SiteQuality
SIO_000300: 1.133e1

GenotypeQuality
all individuals: 166
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3640
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3068
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9822
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500780405811022e-5
allele num: 66632
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

DP
type: SiteQuality
SIO_000300: 2.401868e6

VQSLOD
type: SiteQuality
SIO_000300: 3.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

FS
type: SiteQuality
SIO_000300: 6.316e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e-1

QD
type: SiteQuality
SIO_000300: 9.32e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 13101
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.019160211985324e-4
allele num: 9812
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e0

DP
type: SiteQuality
SIO_000300: 2.401965e6

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.28e-1

MQ
type: SiteQuality
SIO_000300: 5.937e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.67e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.094e1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
all individuals: 5171
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9806
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5004651441947e-5
allele num: 66646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.952e0

QD
type: SiteQuality
SIO_000300: 1.064e1

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 1.873e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.24e-1

MQ
type: SiteQuality
SIO_000300: 5.876e1

VQSLOD
type: SiteQuality
SIO_000300: -7.682e-1

DP
type: SiteQuality
SIO_000300: 2.401694e6

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 11
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GenotypeQuality
all individuals: 4
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 15
bin: 4.75e1
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GenotypeQuality
all individuals: 3543
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66626
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.49e-1

DP
type: SiteQuality
SIO_000300: 2.401315e6

MQ
type: SiteQuality
SIO_000300: 5.882e1

VQSLOD
type: SiteQuality
SIO_000300: -6.369e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.468e0

QD
type: SiteQuality
SIO_000300: 1.017e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

GenotypeQuality
all individuals: 5148
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 64
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GenotypeQuality
all individuals: 145
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GenotypeQuality
all individuals: 23
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 2487
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3347
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

QD
type: SiteQuality
SIO_000300: 1.379e1

MQ
type: SiteQuality
SIO_000300: 5.941e1

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

MQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

FS
type: SiteQuality
SIO_000300: 2.053e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.88e-1

DP
type: SiteQuality
SIO_000300: 2.399174e6

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2486
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502087902184036e-5
allele num: 66574
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.334e1

FS
type: SiteQuality
SIO_000300: 6.582e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.78e-1

DP
type: SiteQuality
SIO_000300: 2.399052e6

VQSLOD
type: SiteQuality
SIO_000300: 4.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.844e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.03e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502584445245823e-5
allele num: 66552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.2053e1

DP
type: SiteQuality
SIO_000300: 2.398103e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.73e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

VQSLOD
type: SiteQuality
SIO_000300: -7.385e0

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.419e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.257e0

QD
type: SiteQuality
SIO_000300: 6.02e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.011963807977876e-5
allele num: 66534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.07e-1

QD
type: SiteQuality
SIO_000300: 1.426e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.997e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.396601e6

VQSLOD
type: SiteQuality
SIO_000300: 2.54e0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.071645415907711e-5
allele num: 16470
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.603e0

QD
type: SiteQuality
SIO_000300: 8.460000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -1.299e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.392156e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.173e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.33e0

MQRankSum
type: SiteQuality
SIO_000300: -1.369e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 1.022076860179886e-4
allele num: 9784
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66454
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.390986e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.827e1

MQRankSum
type: SiteQuality
SIO_000300: -1.231e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.71e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.49e0

VQSLOD
type: SiteQuality
SIO_000300: -1.966e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.505751972535084e-5
allele num: 66412
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.96e-1

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.368e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66322
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.222493887530562e-4
allele num: 16360
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.86e-1

QD
type: SiteQuality
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BaseQRankSum
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SIO_000300: 3.47e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508295625942685e-5
allele num: 66300
num of homozygotes: 0

South Asian
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9758
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele num: 8604
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Other
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ClippingRankSum
type: SiteQuality
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QD
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9750
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509251713000694e-5
allele num: 66258
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.451581269919098e-4
allele num: 16316
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.36656e6

VQSLOD
type: SiteQuality
SIO_000300: 5.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.582e0

MQRankSum
type: SiteQuality
SIO_000300: -5.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.13e-1

FS
type: SiteQuality
SIO_000300: 1.452e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.7e-2

QD
type: SiteQuality
SIO_000300: 1.399e1

GenotypeQuality
all individuals: 469
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3512
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9044
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4515
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 841
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 990
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3325
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3545
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2953
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16320
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.017774692941425e-5
allele num: 66274
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.23e-1

FS
type: SiteQuality
SIO_000300: 8.813000000000001e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.82e-1

QD
type: SiteQuality
SIO_000300: 1.471e1

VQSLOD
type: SiteQuality
SIO_000300: -2.064e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.87e0

DP
type: SiteQuality
SIO_000300: 2.366082e6

GenotypeQuality
all individuals: 38
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3541
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3607
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 927
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2972
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2484
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66212
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.025851456709069e-4
allele num: 9748
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

DP
type: SiteQuality
SIO_000300: 2.360373e6

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

QD
type: SiteQuality
SIO_000300: 1.462e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

GenotypeQuality
all individuals: 4464
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8924
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3542
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 975
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2485
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2962
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25807
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 807
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16222
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511121856866538e-5
allele num: 66176
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9744
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.337e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.048e0

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.22e0

VQSLOD
type: SiteQuality
SIO_000300: -1.166e-1

FS
type: SiteQuality
SIO_000300: 8.503e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.359844e6

GenotypeQuality
all individuals: 833
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 991
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2514
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1057
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8321
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 692
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3350
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4422
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26021
bin: 9.75e1
variant carriers: 251

GenotypeQuality
all individuals: 136
bin: 5.75e1
variant carriers: 1

African
type: Population
allele count: 245
allele frequency: 2.517985611510791e-2
allele num: 9730
num of homozygotes: 7

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.045583701106342e-5
allele num: 66164
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16148
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 9.520512376666089e-4
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.12e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.786e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.558e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

DP
type: SiteQuality
SIO_000300: 2.364627e6

MQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

GenotypeQuality
all individuals: 970
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4396
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2523
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25947
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 674
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3648
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2983
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.024437454633438e-5
allele num: 66128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16008
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

DP
type: SiteQuality
SIO_000300: 2.365286e6

FS
type: SiteQuality
SIO_000300: 5.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

VQSLOD
type: SiteQuality
SIO_000300: 2.68e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.825e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.146e1

GenotypeQuality
all individuals: 62
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8131
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 656
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2530
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26016
bin: 9.75e1
variant carriers: 93

GenotypeQuality
all individuals: 215
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3367
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3656
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 85
allele frequency: 8.737664473684211e-3
allele num: 9728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16108
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.462004500605851e-4
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.536381781890764e-5
allele num: 66132
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-1

DP
type: SiteQuality
SIO_000300: 2.367646e6

MQ
type: SiteQuality
SIO_000300: 5.99e1

MQRankSum
type: SiteQuality
SIO_000300: 1.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.15e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.437e1

GenotypeQuality
all individuals: 40
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9851
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 839
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3086
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2383
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3556
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4184
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.161710037174721e-4
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66244
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.484e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.71e0

FS
type: SiteQuality
SIO_000300: 5.488e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.92e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.69e-1

DP
type: SiteQuality
SIO_000300: 2.439922e6

GenotypeQuality
all individuals: 815
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9694
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3554
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23749
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 400
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.191183754333828e-5
allele num: 16152
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66242
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.837e1

DP
type: SiteQuality
SIO_000300: 2.440901e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.837e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e0

FS
type: SiteQuality
SIO_000300: 1.792e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.752e0

VQSLOD
type: SiteQuality
SIO_000300: -3.169e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 7.91e0

MQRankSum
type: SiteQuality
SIO_000300: 9.13e-1

GenotypeQuality
all individuals: 130
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4199
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10060
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23750
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2384
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 624
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3556
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.018503426001389e-5
allele num: 66258
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16162
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.131e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.09e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.63e0

FS
type: SiteQuality
SIO_000300: 1.532e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.919e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 2.442179e6

GenotypeQuality
all individuals: 61
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23749
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3901
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3555
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10081
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9732
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16162
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66238
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16144018583043e-4
allele num: 8610
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.841e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.442632e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.795e0

VQSLOD
type: SiteQuality
SIO_000300: 9.55e-1

FS
type: SiteQuality
SIO_000300: 9.05e-1

QD
type: SiteQuality
SIO_000300: 1.521e1

MQ
type: SiteQuality
SIO_000300: 5.954e1

GenotypeQuality
all individuals: 5710
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4208
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3561
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3139
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23744
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9938
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508705229172324e-5
allele num: 66282
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16208
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9732
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.44361e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.34e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQRankSum
type: SiteQuality
SIO_000300: 1.79e0

VQSLOD
type: SiteQuality
SIO_000300: -3.678e-1

QD
type: SiteQuality
SIO_000300: 1.368e1