http://identifiers.org/exac.variant/2-51150610-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51150610
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51150610
    reference: chr 2
allele count: 2
allele frequency: 6.189267809618123e-5
allele num: 32314
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.791-785T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.791-785T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.778-57T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.791-785T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.778-57T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.791-785T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.281-785T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.890-785T>G
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12526
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16585
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22849
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22621
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

2-51150618-TATTTA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51150618
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51150613
    reference: chr 2
allele count: 2
allele frequency: 1.278608873545583e-4
allele num: 15642
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.890-798_890-794delTAAAT
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.778-70_778-66delTAAAT
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.281-798_281-794delTAAAT
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.778-70_778-66delTAAAT
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.791-798_791-794delTAAAT
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.791-798_791-794delTAAAT
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.791-798_791-794delTAAAT
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.791-798_791-794delTAAAT
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29384
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13036
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6054
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1010
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29678
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: TATTTA
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

2-51150650-ATTCAC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51150650
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51150645
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 7644
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.778-102_778-98delGTGAA
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.890-830_890-826delGTGAA
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.791-830_791-826delGTGAA
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.791-830_791-826delGTGAA
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.281-830_281-826delGTGAA
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.791-830_791-826delGTGAA
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.791-830_791-826delGTGAA
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.778-102_778-98delGTGAA
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6541
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30662
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29005
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2157
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: ATTCAC
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/2-51150687-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51150687
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51150687
    reference: chr 2
allele count: 5
allele frequency: 9.164222873900294e-4
allele num: 5456
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.778-134T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.890-862T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.791-862T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.778-134T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.791-862T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.791-862T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.791-862T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.281-862T>G
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4176
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22736
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2290
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4526
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4475
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 6.25e1
  variant carriers: 2
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/2-51150689-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51150689
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51150689
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 5274
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.791-864T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.791-864T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.778-136T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.791-864T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.281-864T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.791-864T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.778-136T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.890-864T>G
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22453
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4130
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17803
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4907
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/2-51153038-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51153038
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51153038
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 31938
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.790+38G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.778-2485G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.790+38G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.281-3213G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.778-2485G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.889+38G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.790+38G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.790+38G>T
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22887
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16993
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5005
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1320
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

2-51153042-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51153042
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51153042
    reference: chr 2
allele count: 1
allele frequency: 3.113712791132146e-5
allele num: 32116
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.790+34A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.790+34A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.281-3217A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.778-2489A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.790+34A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.889+34A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.790+34A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.778-2489A>G
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19350
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23741
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3282
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4225
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 973
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 965
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16351
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

2-51153043-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51153043
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51153043
    reference: chr 2
allele count: 5
allele frequency: 1.559770401796855e-4
allele num: 32056
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.790+33C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.790+33C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.790+33C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.790+33C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.281-3218C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.778-2490C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.889+33C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.778-2490C>G
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23953
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19126
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16260
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19471
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

2-51153057-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51153057
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51153057
    reference: chr 2
allele count: 1
allele frequency: 3.051385328939338e-5
allele num: 32772
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.778-2504A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.281-3232A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.790+19A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.889+19A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.778-2504A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.790+19A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.790+19A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.790+19A>G
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26860
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2554
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2415
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1006
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14736
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

2-51153061-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51153061
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51153061
    reference: chr 2
allele count: 4
allele frequency: 1.21307696973373e-4
allele num: 32974
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.790+15C>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.889+15C>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.790+15C>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.790+15C>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.790+15C>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.778-2508C>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.778-2508C>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.281-3236C>A
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27522
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15417
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1970
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25037
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

2-51153062-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51153062
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51153062
    reference: chr 2
allele count: 1
allele frequency: 3.031956824934813e-5
allele num: 32982
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.889+14A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.790+14A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.281-3237A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.790+14A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.790+14A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.790+14A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.778-2509A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.778-2509A>G
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3291
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27676
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2422
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7285
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24928
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14098
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/2-51153072-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51153072
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51153072
    reference: chr 2
allele count: 2
allele frequency: 5.941417622244667e-5
allele num: 33662
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.790+4G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.790+4G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.281-3247G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.889+4G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.778-2519G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.790+4G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.778-2519G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.790+4G>T
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3312
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28657
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13879
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2641
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13283
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26560
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1388
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2445
  bin: 1.75e1
  variant carriers: 0
hgvs: c.889+4G>T
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum

http://identifiers.org/exac.variant/2-51153082-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51153082
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51153082
    reference: chr 2
allele count: 1
allele frequency: 2.917833800186742e-5
allele num: 34272
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.778-2529G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.784G>T
  hgvsp: ENSP00000384311.2:p.Val262Leu
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.784G>T
  hgvsp: ENSP00000385017.2:p.Val262Leu
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.883G>T
  hgvsp: ENSP00000385142.1:p.Val295Leu
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.281-3257G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.784G>T
  hgvsp: ENSP00000385310.1:p.Val262Leu
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.778-2529G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.784G>T
  hgvsp: ENSP00000434015.1:p.Val262Leu
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28814
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13510
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13139
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1963
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3112
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val295Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

2-51153084-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51153084
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51153084
    reference: chr 2
allele count: 4
allele frequency: 1.164144353899884e-4
allele num: 34360
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.778-2531A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.281-3259A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.782A>G
  hgvsp: ENSP00000385017.2:p.Asn261Ser
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.782A>G
  hgvsp: ENSP00000384311.2:p.Asn261Ser
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.778-2531A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.881A>G
  hgvsp: ENSP00000385142.1:p.Asn294Ser
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.782A>G
  hgvsp: ENSP00000385310.1:p.Asn261Ser
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.782A>G
  hgvsp: ENSP00000434015.1:p.Asn261Ser
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13602
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3409
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28720
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13248
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asn294Ser
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

2-51153085-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51153085
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51153085
    reference: chr 2
allele count: 1
allele frequency: 2.916132042458883e-5
allele num: 34292
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.778-2532A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.880A>G
  hgvsp: ENSP00000385142.1:p.Asn294Asp
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.281-3260A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.778-2532A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.781A>G
  hgvsp: ENSP00000385017.2:p.Asn261Asp
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.781A>G
  hgvsp: ENSP00000384311.2:p.Asn261Asp
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.781A>G
  hgvsp: ENSP00000434015.1:p.Asn261Asp
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.781A>G
  hgvsp: ENSP00000385310.1:p.Asn261Asp
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2703
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13918
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3446
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28402
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2524
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2914
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7285
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asn294Asp
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

2-51153087-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51153087
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51153087
    reference: chr 2
allele count: 2
allele frequency: 5.815644082582146e-5
allele num: 34390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.779A>C
  hgvsp: ENSP00000385310.1:p.Asn260Thr
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.779A>C
  hgvsp: ENSP00000434015.1:p.Asn260Thr
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.878A>C
  hgvsp: ENSP00000385142.1:p.Asn293Thr
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.779A>C
  hgvsp: ENSP00000385017.2:p.Asn260Thr
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.281-3262A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.778-2534A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.779A>C
  hgvsp: ENSP00000384311.2:p.Asn260Thr
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.778-2534A>C
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13745
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3470
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28537
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2748
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13475
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1839
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn293Thr
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

2-51153089-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51153089
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51153089
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 34418
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.777C>T
  hgvsp: ENST00000406316.2:c.777C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.778-2536C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.281-3264C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.876C>T
  hgvsp: ENST00000404971.1:c.876C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.778-2536C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.777C>T
  hgvsp: ENST00000405581.1:c.777C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.777C>T
  hgvsp: ENST00000401669.2:c.777C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.777C>T
  hgvsp: ENST00000405472.3:c.777C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13883
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28396
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asp292Asp
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD

2-51153096-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51153096
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51153096
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 34210
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.773-3C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.281-3271C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.778-2543C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.773-3C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.773-3C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.872-3C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.773-3C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.778-2543C>T
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26995
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3756
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2730
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14940
  bin: 7.5e0
  variant carriers: 0
hgvs: c.872-3C>T
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

2-51153099-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51153099
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51153099
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 34318
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.281-3274T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.872-6T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.773-6T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.778-2546T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.773-6T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.773-6T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.778-2546T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.773-6T>C
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3743
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15506
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26732
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15376
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2710
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25192
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 8.25e1
  variant carriers: 0
hgvs: c.872-6T>C
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

2-51153112-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51153112
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51153112
    reference: chr 2
allele count: 1
allele frequency: 2.952814031772279e-5
allele num: 33866
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.281-3287C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.773-19C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.773-19C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.778-2559C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.778-2559C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.773-19C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.872-19C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.773-19C>T
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18277
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4034
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23801
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2411
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7283
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18247
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

2-51153127-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51153127
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51153127
    reference: chr 2
allele count: 1
allele frequency: 3.068049334233295e-5
allele num: 32594
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.773-34T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.773-34T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.872-34T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.773-34T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.281-3302T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.778-2574T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.773-34T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.778-2574T>C
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20515
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3619
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21611
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7283
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4624
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1584
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1520
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

2-51153128-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51153128
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51153128
    reference: chr 2
allele count: 7
allele frequency: 2.142376201260942e-4
allele num: 32674
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.773-35T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.281-3303T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.773-35T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.872-35T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.773-35T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.773-35T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.778-2575T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.778-2575T>C
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21606
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20523
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3632
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1543
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4614
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3110
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ

2-51153131-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51153131
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51153131
    reference: chr 2
allele count: 7
allele frequency: 2.18218093397344e-4
allele num: 32078
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.778-2578T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.773-38T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.872-38T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.773-38T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.778-2578T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.773-38T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.281-3306T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.773-38T>C
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3413
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20485
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21630
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2126
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11641
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5429
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7288
  bin: 9.75e1
  variant carriers: 7
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

2-51153134-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51153134
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51153134
    reference: chr 2
allele count: 1
allele frequency: 3.126367785906334e-5
allele num: 31986
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.773-41A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.773-41A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.773-41A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.872-41A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.281-3309A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.778-2581A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.773-41A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.778-2581A>G
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21662
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20463
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5682
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11087
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4316
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: T
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/2-51153136-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51153136
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51153136
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 30956
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.778-2583G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.778-2583G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.281-3311G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.872-43G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.773-43G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.773-43G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.773-43G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.773-43G>T
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20476
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21766
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6253
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP

2-51153141-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51153141
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51153141
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 30568
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.773-48T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.773-48T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.872-48T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.778-2588T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.773-48T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.778-2588T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.281-3316T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.773-48T>C
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21677
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3045
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20589
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6310
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4276
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7287
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ

2-51191094-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51191094
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51191094
    reference: chr 2
allele count: 1
allele frequency: 1.176747469992939e-4
allele num: 8498
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.777+15315T>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.773-38001T>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.777+15315T>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.872-38001T>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.281-41269T>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.773-38001T>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.773-38001T>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.773-38001T>A
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

2-51191136-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51191136
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51191136
    reference: chr 2
allele count: 379
allele frequency: 4.2728297632469e-2
allele num: 8870
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.777+15273A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.872-38043A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.773-38043A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.773-38043A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.777+15273A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.281-41311A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.773-38043A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.773-38043A>C
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 7.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 2.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 1.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 1.75e1
  variant carriers: 112
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 2.25e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 3.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1375
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 8.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 6.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 8.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 9.75e1
  variant carriers: 314
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 5
num of homozygotes: 12
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

2-51191138-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51191138
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51191138
    reference: chr 2
allele count: 3
allele frequency: 3.41841385597083e-4
allele num: 8776
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.872-38045C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.773-38045C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.773-38045C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.773-38045C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.777+15271C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.773-38045C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.777+15271C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.281-41313C>T
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1234
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1598
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

2-51206359-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51206359
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51206359
    reference: chr 2
allele count: 1
allele frequency: 8.905195290932729e-6
allele num: 112294
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.871+47150A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+48281A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.777+50A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+48281A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+48281A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+48281A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+48281A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.777+50A>G
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4682
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4668
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4261
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5846
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3093
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1160
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 933
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

2-51206367-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51206367
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51206367
    reference: chr 2
allele count: 47
allele frequency: 4.185441786738383e-4
allele num: 112294
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+48273C>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.871+47142C>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+48273C>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.777+42C>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.777+42C>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+48273C>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+48273C>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+48273C>A
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4128
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4263
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5847
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4669
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4683
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2727
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

2-51206374-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51206374
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51206374
    reference: chr 2
allele count: 1
allele frequency: 8.902658333778466e-6
allele num: 112326
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+48266T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+48266T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+48266T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.777+35T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+48266T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.777+35T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.871+47135T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+48266T>C
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4263
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4668
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2580
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5848
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4880
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4682
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3129
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-51206377-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51206377
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51206377
    reference: chr 2
allele count: 2
allele frequency: 1.780785326328911e-5
allele num: 112310
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.777+32G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+48263G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+48263G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+48263G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.871+47132G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+48263G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.777+32G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+48263G>T
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3099
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4681
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4668
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4263
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5849
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3241
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

2-51206378-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51206378
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51206378
    reference: chr 2
allele count: 1
allele frequency: 8.903133903133903e-6
allele num: 112320
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+48262A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+48262A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+48262A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.777+31A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+48262A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.777+31A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.871+47131A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+48262A>C
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3097
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4681
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4880
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4264
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5849
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4669
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3273
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

2-51206381-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51206381
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51206381
    reference: chr 2
allele count: 10
allele frequency: 8.902499821950004e-5
allele num: 112328
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+48259T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.777+28T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.777+28T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+48259T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.871+47128T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+48259T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+48259T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+48259T>C
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2593
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4131
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4670
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5851
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3099
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1239
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

2-51206396-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51206396
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51206396
    reference: chr 2
allele count: 1
allele frequency: 8.898380494749955e-6
allele num: 112380
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.871+47113T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.777+13T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+48244T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+48244T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+48244T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+48244T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+48244T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.777+13T>C
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2955
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3585
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3102
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4670
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5851
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3723
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

2-51206399-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51206399
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51206399
    reference: chr 2
allele count: 1
allele frequency: 8.897272096375252e-6
allele num: 112394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+48241G>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+48241G>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.777+10G>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+48241G>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+48241G>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.777+10G>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+48241G>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.871+47110G>C
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2690
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3586
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4670
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5852
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3705
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP

2-51206404-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51206404
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51206404
    reference: chr 2
allele count: 5
allele frequency: 4.448398576512456e-5
allele num: 112400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+48236A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.871+47105A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.777+5A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+48236A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+48236A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+48236A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+48236A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.777+5A>G
  variant of: http://identifiers.org/hgnc/8008
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2977
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4669
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5853
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1010
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3787
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1260
  bin: 6.75e1
  variant carriers: 0
hgvs: c.777+5A>G
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

2-51206408-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51206408
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51206408
    reference: chr 2
allele count: 1
allele frequency: 8.896005693443644e-6
allele num: 112410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+48232G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.777+1G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.871+47101G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.777+1G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+48232G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+48232G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+48232G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+48232G>A
  variant of: http://identifiers.org/hgnc/8008
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4669
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2444
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5854
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1011
  bin: 7.75e1
  variant carriers: 0
hgvs: c.777+1G>A
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-51206410-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51206410
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51206410
    reference: chr 2
allele count: 1
allele frequency: 8.895530885283234e-6
allele num: 112416
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.776A>G
  hgvsp: ENSP00000385434.3:p.Asp259Gly
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+48230A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+48230A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.871+47099A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.776A>G
  hgvsp: ENSP00000385681.3:p.Asp259Gly
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+48230A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+48230A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+48230A>G
  variant of: http://identifiers.org/hgnc/8008
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2974
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4669
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5853
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp259Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/2-51206414-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51206414
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51206414
    reference: chr 2
allele count: 12
allele frequency: 1.0674067353365e-4
allele num: 112422
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+48226G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.773-1G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+48226G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+48226G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+48226G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.871+47095G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.773-1G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+48226G>T
  variant of: http://identifiers.org/hgnc/8008
canonical: false
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4265
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3103
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2447
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4669
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4133
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5854
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 7.25e1
  variant carriers: 0
hgvs: c.773-1G>T
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

2-51206414-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51206414
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51206414
    reference: chr 2
allele count: 2
allele frequency: 1.779011225560833e-5
allele num: 112422
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.773-1G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.773-1G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+48226G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.871+47095G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+48226G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+48226G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+48226G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+48226G>A
  variant of: http://identifiers.org/hgnc/8008
canonical: false
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4669
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5854
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2958
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 2.25e1
  variant carriers: 0
hgvs: c.773-1G>A
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

2-51206416-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51206416
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51206416
    reference: chr 2
allele count: 1
allele frequency: 8.895372627159352e-6
allele num: 112418
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+48224C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+48224C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.773-3C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+48224C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+48224C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.773-3C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+48224C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.871+47093C>T
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4669
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3588
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4263
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5855
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3103
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/2-51206425-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51206425
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51206425
    reference: chr 2
allele count: 1
allele frequency: 8.893315783856854e-6
allele num: 112444
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+48215T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+48215T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.871+47084T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.773-12T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+48215T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.773-12T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+48215T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+48215T>G
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3588
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5854
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4262
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4669
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

2-51206431-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51206431
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51206431
    reference: chr 2
allele count: 1
allele frequency: 8.893790355573739e-6
allele num: 112438
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+48209G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.773-18G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.871+47078G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+48209G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+48209G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.773-18G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+48209G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+48209G>A
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4669
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4262
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5854
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46636
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

2-51206435-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51206435
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51206435
    reference: chr 2
allele count: 1
allele frequency: 8.893473968801694e-6
allele num: 112442
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+48205G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.773-22G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.773-22G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+48205G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+48205G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.871+47074G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+48205G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+48205G>A
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2460
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2834
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4262
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4668
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5855
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46636
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

2-51206437-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51206437
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51206437
    reference: chr 2
allele count: 4
allele frequency: 3.557199772339215e-5
allele num: 112448
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+48203G>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.773-24G>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+48203G>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.871+47072G>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+48203G>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+48203G>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+48203G>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.773-24G>C
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2774
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4133
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5855
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4880
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4667
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4262
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum

2-51206439-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51206439
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51206439
    reference: chr 2
allele count: 1
allele frequency: 8.892999430848037e-6
allele num: 112448
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+48201G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+48201G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+48201G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.871+47070G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.773-26G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+48201G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.773-26G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+48201G>A
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3586
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4263
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2464
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4667
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5855
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46635
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-51206450-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51206450
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51206450
    reference: chr 2
allele count: 1
allele frequency: 8.892999430848037e-6
allele num: 112448
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+48190A>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.871+47059A>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.773-37A>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+48190A>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+48190A>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.773-37A>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+48190A>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+48190A>T
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2703
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3586
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4667
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2407
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5855
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3146
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

2-51206456-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51206456
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51206456
    reference: chr 2
allele count: 3
allele frequency: 2.668232029457282e-5
allele num: 112434
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.773-43T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+48184T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+48184T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.773-43T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+48184T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+48184T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.871+47053T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+48184T>C
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4666
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2425
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5855
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

2-51206458-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51206458
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51206458
    reference: chr 2
allele count: 1
allele frequency: 8.8974304220941e-6
allele num: 112392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.773-45G>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+48182G>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+48182G>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+48182G>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.871+47051G>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.773-45G>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+48182G>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+48182G>C
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2549
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3588
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5855
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4666
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1002
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/2-51253477-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51253477
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51253477
    reference: chr 2
allele count: 182
allele frequency: 5.805422647527911e-3
allele num: 31350
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.772+1163T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+1163T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+1163T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+1163T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.871+32T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+1163T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.772+1163T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+1163T>G
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 19408
  bin: 2.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 3844
  bin: 1.25e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 1.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 24232
  bin: 7.5e0
  variant carriers: 202
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 9.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 7.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2950
  bin: 1.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 16409
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1492
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 8.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.25e1
  variant carriers: 10
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP

2-51253479-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51253479
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51253479
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 31610
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+1161A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+1161A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+1161A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.871+30A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.772+1161A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.772+1161A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+1161A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+1161A>C
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25101
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18544
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2890
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3823
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum

2-51253481-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51253481
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51253482
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 31932
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+1158dupA
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+1158dupA
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+1158dupA
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+1158dupA
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.871+27dupA
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+1158dupA
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.772+1158dupA
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.772+1158dupA
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17655
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25861
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15399
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3481
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2530
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

2-51253484-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51253484
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51253484
    reference: chr 2
allele count: 1
allele frequency: 3.099621846134772e-5
allele num: 32262
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.871+25G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.772+1156G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+1156G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+1156G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+1156G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.772+1156G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+1156G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+1156G>A
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16307
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3974
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26992
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5467
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14458
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23205
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1601
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2982
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

2-51253485-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51253485
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51253485
    reference: chr 2
allele count: 7
allele frequency: 2.142113960462697e-4
allele num: 32678
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+1155C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+1155C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+1155C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.772+1155C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.772+1155C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+1155C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.871+24C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+1155C>T
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27737
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15462
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1633
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13833
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24455
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2687
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

2-51253493-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51253493
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51253493
    reference: chr 2
allele count: 1
allele frequency: 2.916472235184321e-5
allele num: 34288
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+1147G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+1147G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.772+1147G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+1147G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+1147G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+1147G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.871+16G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.772+1147G>A
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30291
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4106
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2461
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1487
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3364
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

2-51253500-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51253500
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51253500
    reference: chr 2
allele count: 183
allele frequency: 4.951298701298701e-3
allele num: 36960
alternate allele: T
annotation: Annotation
  canonical: false
  clinical significance: benign&likely_benign
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.772+1140G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  clinical significance: benign&likely_benign
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+1140G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  clinical significance: benign&likely_benign
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+1140G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  clinical significance: benign&likely_benign
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+1140G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  clinical significance: benign&likely_benign
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.871+9G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  clinical significance: benign&likely_benign
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+1140G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  clinical significance: benign&likely_benign
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+1140G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  clinical significance: benign&likely_benign
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.772+1140G>A
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31584
  bin: 7.5e0
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 9711
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 9.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 1.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4357
  bin: 1.25e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1981
  bin: 1.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1549
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1458
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4168
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1638
  bin: 2.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 7.75e1
  variant carriers: 2
num of homozygotes: 2
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

2-51253521-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51253521
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51253521
    reference: chr 2
allele count: 1
allele frequency: 2.235436133589664e-5
allele num: 44734
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.772+1119C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+1119C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+1119C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.772+1119C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.859C>T
  hgvsp: ENSP00000385142.1:p.Pro287Ser
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+1119C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+1119C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+1119C>T
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32839
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4701
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4554
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7629
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1378
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro287Ser
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

2-51253522-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51253522
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51253522
    reference: chr 2
allele count: 8
allele frequency: 1.764991395666946e-4
allele num: 45326
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+1118G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.772+1118G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+1118G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.858G>A
  hgvsp: ENST00000404971.1:c.858G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+1118G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+1118G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+1118G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.772+1118G>A
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6957
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32708
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4284
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4508
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2070
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31934
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1047
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4385
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Lys286Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP

2-51253527-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51253527
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51253527
    reference: chr 2
allele count: 1
allele frequency: 2.083767451552407e-5
allele num: 47990
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.772+1113G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+1113G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+1113G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+1113G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.772+1113G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+1113G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+1113G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.853G>A
  hgvsp: ENSP00000385142.1:p.Ala285Thr
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3717
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8259
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1273
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3626
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala285Thr
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

2-51253528-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51253528
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51253528
    reference: chr 2
allele count: 1
allele frequency: 2.052966536645453e-5
allele num: 48710
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.852A>G
  hgvsp: ENST00000404971.1:c.852A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+1112A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+1112A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.772+1112A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+1112A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+1112A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+1112A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.772+1112A>G
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32063
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8582
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1262
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr284Thr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff

2-51253538-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51253538
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51253538
    reference: chr 2
allele count: 2
allele frequency: 3.765910973864578e-5
allele num: 53108
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+1102G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+1102G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.772+1102G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+1102G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.842G>A
  hgvsp: ENSP00000385142.1:p.Cys281Tyr
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+1102G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.772+1102G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+1102G>A
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10818
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30798
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1018
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5445
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2551
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Cys281Tyr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS

2-51253546-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51253546
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51253546
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 56540
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.834A>C
  hgvsp: ENSP00000385142.1:p.Lys278Asn
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+1094A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+1094A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+1094A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+1094A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.772+1094A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.772+1094A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+1094A>C
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12321
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3716
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29652
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2082
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Lys278Asn
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

2-51253554-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51253554
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51253554
    reference: chr 2
allele count: 3
allele frequency: 5.083884087442806e-5
allele num: 59010
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+1086C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+1086C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+1086C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+1086C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.826C>G
  hgvsp: ENSP00000385142.1:p.Gln276Glu
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.772+1086C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.772+1086C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+1086C>G
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28604
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3847
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2802
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13177
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29496
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1837
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln276Glu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

2-51253558-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51253558
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51253558
    reference: chr 2
allele count: 2
allele frequency: 3.314001657000828e-5
allele num: 60350
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+1082T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.772+1082T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+1082T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+1082T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+1082T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.772+1082T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.822T>C
  hgvsp: ENST00000404971.1:c.822T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+1082T>C
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13559
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3962
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29430
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5445
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1699
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn274Asn
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-51253559-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51253559
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51253559
    reference: chr 2
allele count: 1
allele frequency: 1.648532805802836e-5
allele num: 60660
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+1081A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+1081A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+1081A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.772+1081A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.772+1081A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.821A>G
  hgvsp: ENSP00000385142.1:p.Asn274Ser
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+1081A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+1081A>G
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3905
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28090
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13755
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1661
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1290
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29502
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5444
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Asn274Ser
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

2-51253562-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51253562
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51253562
    reference: chr 2
allele count: 48
allele frequency: 7.827022796203894e-4
allele num: 61326
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.818A>G
  hgvsp: ENSP00000385142.1:p.Asp273Gly
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+1078A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+1078A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.772+1078A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+1078A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+1078A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.772+1078A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+1078A>G
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13920
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4055
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27754
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1284
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1615
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 1.75e1
  variant carriers: 1
hgvs: p.Asp273Gly
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

2-51253564-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51253564
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51253564
    reference: chr 2
allele count: 1
allele frequency: 1.625804773362815e-5
allele num: 61508
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.772+1076T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+1076T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+1076T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+1076T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.816T>C
  hgvsp: ENST00000404971.1:c.816T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.772+1076T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+1076T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+1076T>C
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27644
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13724
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5439
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14590
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29452
  bin: 2.25e1
  variant carriers: 0
hgvs: p.His272His
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-51253572-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51253572
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51253572
    reference: chr 2
allele count: 1
allele frequency: 1.610098538030527e-5
allele num: 62108
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+1068C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+1068C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+1068C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.772+1068C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.808C>G
  hgvsp: ENSP00000385142.1:p.Leu270Val
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+1068C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.772+1068C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+1068C>G
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3061
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4929
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14579
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu270Val
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

2-51253576-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51253576
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 51253576
    reference: chr 2
allele count: 1
allele frequency: 1.613163413453783e-5
allele num: 61990
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.772+1064G>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000496792
  gene symbol: NRXN1
  hgvsc: ENST00000496792.2:n.280+1064G>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.772+1064G>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.804G>C
  hgvsp: ENST00000404971.1:c.804G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.772+1064G>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385310
  ensembl transcript: ENST00000405581
  gene symbol: NRXN1
  hgvsc: ENST00000405581.1:c.772+1064G>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.772+1064G>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.772+1064G>C
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5472
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27031
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12694
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro268Pro
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 1817
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1126
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1235
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1635
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 20
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 310
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5866
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3068
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2516
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 7.052186177715092e-4
allele num: 2836
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.749e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.51e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.743e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.62e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 8.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

DP
type: SiteQuality
SIO_000300: 4.12679e5

GenotypeQuality
all individuals: 91
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1825
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2231
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12762
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1152
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1664
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 4.828585224529213e-4
allele num: 4142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.83e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 2.94644e5

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 5.25e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.73e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.123e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1160
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 106
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.37e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.054e0

VQSLOD
type: SiteQuality
SIO_000300: 4.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQ
type: SiteQuality
SIO_000300: 5.177e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.02e0

DP
type: SiteQuality
SIO_000300: 1.81354e5

GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8
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GenotypeQuality
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.847290640394089e-3
allele num: 1624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 102
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 3.878975950349108e-4
allele num: 2578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 6.944444444444444e-3
allele num: 144
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e0

FS
type: SiteQuality
SIO_000300: 1.3255e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.21e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

QD
type: SiteQuality
SIO_000300: 1.271e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.19359e5

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 98
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.39e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.29e-1

DP
type: SiteQuality
SIO_000300: 1.16779e5

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.609e0

QD
type: SiteQuality
SIO_000300: 8.029999999999999e0

GenotypeQuality
all individuals: 16405
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 378
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GenotypeQuality
all individuals: 982
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2164
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1022
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 316
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8156
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1266
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.16e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.24e-2

QD
type: SiteQuality
SIO_000300: 1.14e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.475e0

DP
type: SiteQuality
SIO_000300: 1.082505e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.537e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1919
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GenotypeQuality
all individuals: 596
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3296
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1028
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 7.800312012480499e-4
allele num: 1282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15842
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 316
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.76e-1

FS
type: SiteQuality
SIO_000300: 2.341e0

VQSLOD
type: SiteQuality
SIO_000300: -1.095e0

DP
type: SiteQuality
SIO_000300: 1.090436e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-2

MQ
type: SiteQuality
SIO_000300: 5.414e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.453e0

QD
type: SiteQuality
SIO_000300: 1.033e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 387
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 3.160556257901391e-4
allele num: 15820
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2172
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1272
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8164
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 316
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1026
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.092646e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.03e0

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

QD
type: SiteQuality
SIO_000300: 1.273e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.06e-2

FS
type: SiteQuality
SIO_000300: 7.758e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.657e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 314
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.221896383186706e-4
allele num: 8184
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2228
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 16270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1050
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.116809e6

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.86e-1

QD
type: SiteQuality
SIO_000300: 1.374e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.76e-2

FS
type: SiteQuality
SIO_000300: 5.576e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.43e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2228
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
allele num: 8200
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 4
allele frequency: 1.181334908446545e-3
allele num: 3386
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 318
num of homozygotes: 0

Latino
type: Population
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allele num: 1068
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.68e-2

DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.789e0

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.977e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 318
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2216
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Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 1
allele frequency: 7.25689404934688e-4
allele num: 1378
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8198
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.73e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.44e-1

QD
type: SiteQuality
SIO_000300: 9.19e0

DP
type: SiteQuality
SIO_000300: 1.125432e6

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.51e0

FS
type: SiteQuality
SIO_000300: 2.817e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.79e0

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 2888
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7286
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.191469081377338e-4
allele num: 16786
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1460
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8232
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1150
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 318
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.34e0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.55e-2

DP
type: SiteQuality
SIO_000300: 1.136103e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.286e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.652e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.0e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 326
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.208605269518975e-4
allele num: 8274
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17166
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.141707e6

FS
type: SiteQuality
SIO_000300: 4.027e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.869e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.49e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.879999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.33e-1

QD
type: SiteQuality
SIO_000300: 1.118e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

GenotypeQuality
all individuals: 391
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
all individuals: 661
bin: 6.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1180
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 330
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 8.542141230068337e-4
allele num: 3512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.806526535826269e-5
allele num: 17222
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2292
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1544
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.756e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.985e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.72e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.93e-1

DP
type: SiteQuality
SIO_000300: 1.141295e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 663
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variant carriers: 0

GenotypeQuality
all individuals: 26668
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1170
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.820721769499418e-5
allele num: 17180
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2284
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 328
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.52e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.55e-2

QD
type: SiteQuality
SIO_000300: 8.49e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.157e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.39e-1

DP
type: SiteQuality
SIO_000300: 1.138529e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.67e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1182
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2288
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8278
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 1.30718954248366e-3
allele num: 1530
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.140792e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.641e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.52e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

QD
type: SiteQuality
SIO_000300: 1.171e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17276
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 332
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8278
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.56e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.96e-1

QD
type: SiteQuality
SIO_000300: 3.36e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.57e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.139848e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.406e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17150
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1180
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 330
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2272
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -8.672e-1

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.82e-2

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.130827e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.91e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1190
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17248
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 334
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8268
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

DP
type: SiteQuality
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FS
type: SiteQuality
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QD
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MQRankSum
type: SiteQuality
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ClippingRankSum
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.34e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1128
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2248
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 6.915629322268327e-4
allele num: 1446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
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South Asian
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InbreedingCoeff
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FS
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QD
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ClippingRankSum
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VQSLOD
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MQ
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DP
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 8154
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 2200
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African
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allele frequency: 0.0e0
allele num: 3376
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East Asian
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allele frequency: 0.0e0
allele num: 1324
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 6.156119182467373e-5
allele num: 16244
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 988
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Other
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
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MQRankSum
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ClippingRankSum
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SIO_000300: -4.22e-1

VQSLOD
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FS
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MQ
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DP
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InbreedingCoeff
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 2202
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 7.354743809757293e-4
allele num: 8158
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Other
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allele frequency: 0.0e0
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African
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allele frequency: 2.94811320754717e-4
allele num: 3392
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 16288
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 1330
num of homozygotes: 0

DP
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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FS
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VQSLOD
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QD
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 2166
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 4.391468005018821e-4
allele num: 15940
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 8134
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Latino
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allele frequency: 0.0e0
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DP
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SIO_000300: 1.066629e6

QD
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FS
type: SiteQuality
SIO_000300: 5.629999999999999e-1

MQ
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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SIO_000300: 0.0e0

VQSLOD
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BaseQRankSum
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SIO_000300: 2.64e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 904
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Other
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allele frequency: 0.0e0
allele num: 310
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East Asian
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allele frequency: 7.974481658692185e-4
allele num: 1254
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 15888
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South Asian
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allele frequency: 0.0e0
allele num: 8140
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European (Finnish)
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allele frequency: 0.0e0
allele num: 2158
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 3332
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.87e0

FS
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ReadPosRankSum
type: SiteQuality
SIO_000300: -6.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

BaseQRankSum
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DP
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SIO_000300: 1.064757e6

MQ
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -4.12e-2

VQSLOD
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ClippingRankSum
type: SiteQuality
SIO_000300: 8.51e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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MQ
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ReadPosRankSum
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VQSLOD
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FS
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InbreedingCoeff
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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Other
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ReadPosRankSum
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FS
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InbreedingCoeff
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MQRankSum
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DP
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BaseQRankSum
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VQSLOD
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QD
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

South Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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East Asian
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Other
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ClippingRankSum
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VQSLOD
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FS
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MQRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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MQ
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: NaN
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East Asian
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South Asian
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Latino
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African
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European (Non-Finnish)
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Other
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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DP
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MQ
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FS
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MQRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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European (Non-Finnish)
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African
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South Asian
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European (Finnish)
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allele frequency: NaN
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Latino
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num of homozygotes: 0

FS
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.919e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.877e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.4561e4

QD
type: SiteQuality
SIO_000300: 7.59e0

GenotypeQuality
all individuals: 151
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2054
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 891
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46622
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 646
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61218
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8148
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8162
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.204243702692642e-5
allele num: 16118
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.342e0

DP
type: SiteQuality
SIO_000300: 3.558098e6

QD
type: SiteQuality
SIO_000300: 1.165e1

FS
type: SiteQuality
SIO_000300: 1.939e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.52e0

VQSLOD
type: SiteQuality
SIO_000300: -1.052e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.59e-1

GenotypeQuality
all individuals: 188
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 47

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8158
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16120
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

African
type: Population
allele count: 41
allele frequency: 5.031909671084929e-3
allele num: 8148
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.338078291814947e-4
allele num: 11240
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.44e-1

MQ
type: SiteQuality
SIO_000300: 5.985e1

FS
type: SiteQuality
SIO_000300: 2.63e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.881e0

VQSLOD
type: SiteQuality
SIO_000300: 2.45e0

QD
type: SiteQuality
SIO_000300: 1.244e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.16e-1

DP
type: SiteQuality
SIO_000300: 3.560258e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

GenotypeQuality
all individuals: 980
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 887
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46627
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 110
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1208
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 653
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variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61238
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.227295041728031e-4
allele num: 8148
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11240
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8162
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16132
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.563311e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.78e0

MQRankSum
type: SiteQuality
SIO_000300: -6.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

FS
type: SiteQuality
SIO_000300: 7.972e0

QD
type: SiteQuality
SIO_000300: 1.597e1

VQSLOD
type: SiteQuality
SIO_000300: -1.358e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.383e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e0

GenotypeQuality
all individuals: 658
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46626
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 268
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variant carriers: 0

GenotypeQuality
all individuals: 222
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GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
all individuals: 979
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variant carriers: 0

GenotypeQuality
all individuals: 896
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variant carriers: 0

GenotypeQuality
all individuals: 112
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variant carriers: 0

GenotypeQuality
all individuals: 1211
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8146
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16126
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8158
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11240
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.266159323251788e-5
allele num: 61234
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.971e1

MQRankSum
type: SiteQuality
SIO_000300: 1.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.4e-1

DP
type: SiteQuality
SIO_000300: 3.564455e6

FS
type: SiteQuality
SIO_000300: 5.014e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.065e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

QD
type: SiteQuality
SIO_000300: 1.337e1

GenotypeQuality
all individuals: 105
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 980
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 659
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variant carriers: 0

GenotypeQuality
all individuals: 161
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GenotypeQuality
all individuals: 267
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variant carriers: 0

GenotypeQuality
all individuals: 597
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variant carriers: 0

GenotypeQuality
all individuals: 543
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variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
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variant carriers: 0

GenotypeQuality
all individuals: 46629
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 927
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16130
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.632972990626735e-5
allele num: 61238
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8148
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11240
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.897e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.475e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.41e-1

DP
type: SiteQuality
SIO_000300: 3.56491e6

MQRankSum
type: SiteQuality
SIO_000300: -1.437e0

VQSLOD
type: SiteQuality
SIO_000300: 7.67e-1

QD
type: SiteQuality
SIO_000300: 1.156e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

GenotypeQuality
all individuals: 99
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46631
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 987
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 180
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variant carriers: 0

GenotypeQuality
all individuals: 79
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variant carriers: 0

GenotypeQuality
all individuals: 80
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GenotypeQuality
all individuals: 898
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variant carriers: 0

GenotypeQuality
all individuals: 929
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variant carriers: 0

GenotypeQuality
all individuals: 3330
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8148
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.576329331046312e-4
allele num: 8162
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61232
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11240
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.85850576136786e-4
allele num: 16142
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.76e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

DP
type: SiteQuality
SIO_000300: 3.56615e6

QD
type: SiteQuality
SIO_000300: 1.197e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.32e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

GenotypeQuality
all individuals: 46631
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 930
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 547
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GenotypeQuality
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GenotypeQuality
all individuals: 32
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 78
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variant carriers: 0

GenotypeQuality
all individuals: 40
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variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 8.75e1
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GenotypeQuality
all individuals: 1005
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.632546445946387e-5
allele num: 61254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8166
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8148
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16164
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

DP
type: SiteQuality
SIO_000300: 3.569825e6

FS
type: SiteQuality
SIO_000300: 9.330000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.91e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.05e0

QD
type: SiteQuality
SIO_000300: 1.126e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.23e-1

GenotypeQuality
all individuals: 118
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 76
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GenotypeQuality
all individuals: 548
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 48
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1254
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GenotypeQuality
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GenotypeQuality
all individuals: 907
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variant carriers: 0

GenotypeQuality
all individuals: 29
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GenotypeQuality
all individuals: 930
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8166
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.227596366314756e-4
allele num: 8146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61264
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11246
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.22e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.31e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.3e-2

FS
type: SiteQuality
SIO_000300: 4.601e0

QD
type: SiteQuality
SIO_000300: 1.712e1

DP
type: SiteQuality
SIO_000300: 3.570369e6

GenotypeQuality
all individuals: 566
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 46632
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 932
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variant carriers: 0

GenotypeQuality
all individuals: 909
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variant carriers: 0

GenotypeQuality
all individuals: 105
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variant carriers: 0

GenotypeQuality
all individuals: 25
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GenotypeQuality
all individuals: 23
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GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 93
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 6.136475208640157e-4
allele num: 8148
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11244
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16172
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8168
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61260
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.57104e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.52e0

VQSLOD
type: SiteQuality
SIO_000300: 2.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.69e-1

FS
type: SiteQuality
SIO_000300: 3.448e0

QD
type: SiteQuality
SIO_000300: 1.35e1

MQ
type: SiteQuality
SIO_000300: 5.956e1

MQRankSum
type: SiteQuality
SIO_000300: 1.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3783
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8148
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.632173402102239e-5
allele num: 61268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8166
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11248
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.301e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.07e-1

DP
type: SiteQuality
SIO_000300: 3.571422e6

MQRankSum
type: SiteQuality
SIO_000300: -8.04e-1

QD
type: SiteQuality
SIO_000300: 1.398e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.632173402102239e-5
allele num: 61268
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8168
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8148
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11248
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16174
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 3.571546e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.765e0

QD
type: SiteQuality
SIO_000300: 7.47e0

MQRankSum
type: SiteQuality
SIO_000300: 3.44e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

FS
type: SiteQuality
SIO_000300: 1.911e0

VQSLOD
type: SiteQuality
SIO_000300: -7.786999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.41e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 12

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11250
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 7.420232500618352e-4
allele num: 16172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8168
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8148
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.252e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-1

FS
type: SiteQuality
SIO_000300: 3.264e0

DP
type: SiteQuality
SIO_000300: 3.572146e6

VQSLOD
type: SiteQuality
SIO_000300: 9.66e-1

QD
type: SiteQuality
SIO_000300: 1.09e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.76e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8168
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16172
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.264133698916308e-5
allele num: 61272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8148
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.572146e6

FS
type: SiteQuality
SIO_000300: 3.264e0

QD
type: SiteQuality
SIO_000300: 1.09e1

VQSLOD
type: SiteQuality
SIO_000300: 9.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.252e0

GenotypeQuality
all individuals: 591
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variant carriers: 0

GenotypeQuality
all individuals: 15
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.632120124041129e-5
allele num: 61270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8148
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16172
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11250
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8168
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.24e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.879999999999999e-1

FS
type: SiteQuality
SIO_000300: 1.44e0

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 1.21e1

DP
type: SiteQuality
SIO_000300: 3.572293e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 70
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.631907046574627e-5
allele num: 61278
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8148
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8174
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16178
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.98e0

FS
type: SiteQuality
SIO_000300: 1.733e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -9.429999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.919999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQRankSum
type: SiteQuality
SIO_000300: -2.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.872e0

DP
type: SiteQuality
SIO_000300: 3.572641e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8174
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11256
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8148
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.180469715698394e-5
allele num: 16180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61268
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

DP
type: SiteQuality
SIO_000300: 3.572542e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e0

MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.78e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

QD
type: SiteQuality
SIO_000300: 1.394e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.632013578352972e-5
allele num: 61274
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16180
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8174
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11254
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.877e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.97e-2

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.964e0

QD
type: SiteQuality
SIO_000300: 2.298e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.91e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

VQSLOD
type: SiteQuality
SIO_000300: -2.376e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.374e0

DP
type: SiteQuality
SIO_000300: 3.572477e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8148
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11258
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.472187886279357e-4
allele num: 16180
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61274
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.19e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.151e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.899999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-3

DP
type: SiteQuality
SIO_000300: 3.572242e6

FS
type: SiteQuality
SIO_000300: 3.198e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.13e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 917
bin: 8.25e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61276
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.227295041728031e-4
allele num: 8148
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11258
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.905e1

MQRankSum
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SIO_000300: 1.43e0

FS
type: SiteQuality
SIO_000300: 5.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.687e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.55e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8146
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8178
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.631853785900783e-5
allele num: 61280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11266
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16166
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.966e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.62e-1

DP
type: SiteQuality
SIO_000300: 3.570026e6

InbreedingCoeff
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SIO_000300: 3.8e-3

VQSLOD
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MQRankSum
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SIO_000300: -1.95e-1

MQ
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.23e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.99e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8180
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11266
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8150
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.187353050365054e-5
allele num: 16162
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.264559937320449e-5
allele num: 61264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
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BaseQRankSum
type: SiteQuality
SIO_000300: 7.04e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

QD
type: SiteQuality
SIO_000300: 1.201e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.04e-1

VQSLOD
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SIO_000300: 1.09e0

FS
type: SiteQuality
SIO_000300: 1.278e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

MQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

DP
type: SiteQuality
SIO_000300: 3.569176e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.632493143528797e-5
allele num: 61256
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8148
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8180
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11260
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16136
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.098e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

FS
type: SiteQuality
SIO_000300: 8.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

QD
type: SiteQuality
SIO_000300: 1.779e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.074e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

DP
type: SiteQuality
SIO_000300: 3.569324e6

GenotypeQuality
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variant carriers: 13

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 231

GenotypeQuality
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variant carriers: 18

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 155
allele frequency: 1.083007266629402e-2
allele num: 14312
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.564638783269962e-4
allele num: 8416
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 2.664298401420959e-3
allele num: 3378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 2.714932126696832e-3
allele num: 2210
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 9.216589861751152e-3
allele num: 868
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 3.03030303030303e-3
allele num: 330
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.397e1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.85e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.69e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.32e-1

DP
type: SiteQuality
SIO_000300: 7.78629e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2216
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3404
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1860
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

DP
type: SiteQuality
SIO_000300: 7.8128e5

MQRankSum
type: SiteQuality
SIO_000300: 1.42e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.81e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.73e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 14650
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 332
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1910
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 914
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2234
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3440
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DP
type: SiteQuality
SIO_000300: 7.88356e5

VQSLOD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.275e1

MQRankSum
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SIO_000300: 1.5e0

ReadPosRankSum
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ClippingRankSum
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FS
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 334
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 6.733099919202801e-5
allele num: 14852
num of homozygotes: 0

South Asian
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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BaseQRankSum
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 15086
num of homozygotes: 0

African
type: Population
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Other
type: Population
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South Asian
type: Population
allele count: 7
allele frequency: 8.233356857210068e-4
allele num: 8502
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1996
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Latino
type: Population
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
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VQSLOD
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InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 3.459e0

MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1062
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.165501165501166e-4
allele num: 8580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2210
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15994
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.528e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.66e0

DP
type: SiteQuality
SIO_000300: 8.34859e5

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.14e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.616e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.663e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.769e0

GenotypeQuality
all individuals: 29047
bin: 2.25e1
variant carriers: 3

GenotypeQuality
all individuals: 678
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 916
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 392
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 664
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 612
bin: 9.25e1
variant carriers: 14

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 9130
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 446
bin: 8.75e1
variant carriers: 9

GenotypeQuality
all individuals: 163
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 211
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 127
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 5611
bin: 9.75e1
variant carriers: 191

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 2.293052052281587e-4
allele num: 17444
num of homozygotes: 0

African
type: Population
allele count: 176
allele frequency: 4.30317848410758e-2
allele num: 4090
num of homozygotes: 2

Latino
type: Population
allele count: 3
allele frequency: 2.276176024279211e-3
allele num: 1318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2494
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.63428e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.683e0

QD
type: SiteQuality
SIO_000300: 1.309e1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 1.163e0

VQSLOD
type: SiteQuality
SIO_000300: 4.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.48e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
all individuals: 438
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5444
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 31964
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
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GenotypeQuality
all individuals: 191
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1372
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9302
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2056
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.605747973470892e-5
allele num: 21712
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.698e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.26e-1

QD
type: SiteQuality
SIO_000300: 2.39e0

DP
type: SiteQuality
SIO_000300: 9.41398e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.763e0

FS
type: SiteQuality
SIO_000300: 5.74e0

MQRankSum
type: SiteQuality
SIO_000300: -7.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.26e-1

GenotypeQuality
all individuals: 1357
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 701
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variant carriers: 0

GenotypeQuality
all individuals: 7915
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 438
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variant carriers: 0

GenotypeQuality
all individuals: 667
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variant carriers: 0

GenotypeQuality
all individuals: 492
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variant carriers: 0

GenotypeQuality
all individuals: 223
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variant carriers: 0

GenotypeQuality
all individuals: 1358
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5449
bin: 9.75e1
variant carriers: 7

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22040
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 4.748338081671415e-4
allele num: 2106
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 1.43090760425184e-3
allele num: 4892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2928
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.599999999999999e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.149e0

MQRankSum
type: SiteQuality
SIO_000300: -2.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

FS
type: SiteQuality
SIO_000300: 1.115e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.82e0

QD
type: SiteQuality
SIO_000300: 1.259e1

DP
type: SiteQuality
SIO_000300: 9.47379e5

GenotypeQuality
all individuals: 1283
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1132
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31672
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9154
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5444
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 600
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5146
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3074
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.256043581886278e-5
allele num: 23496
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.18e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.72211e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.500000000000001e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.55e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.29e0

QD
type: SiteQuality
SIO_000300: 1.027e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.75e-1

GenotypeQuality
all individuals: 3479
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1253
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9489
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variant carriers: 0

GenotypeQuality
all individuals: 618
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variant carriers: 0

GenotypeQuality
all individuals: 31664
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variant carriers: 0

GenotypeQuality
all individuals: 288
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variant carriers: 0

GenotypeQuality
all individuals: 692
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variant carriers: 0

GenotypeQuality
all individuals: 620
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variant carriers: 0

GenotypeQuality
all individuals: 5444
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 440
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3114
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3944
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23904
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.916443081640475e-4
allele num: 5218
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9594
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.539999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: 2.42e-1

DP
type: SiteQuality
SIO_000300: 9.77122e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.021e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.55e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.91e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.900000000000001e-3

GenotypeQuality
all individuals: 541
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 947
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variant carriers: 0

GenotypeQuality
all individuals: 11657
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variant carriers: 0

GenotypeQuality
all individuals: 502
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variant carriers: 0

GenotypeQuality
all individuals: 349
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variant carriers: 0

GenotypeQuality
all individuals: 30873
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variant carriers: 0

GenotypeQuality
all individuals: 212
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GenotypeQuality
all individuals: 1144
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
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variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3040
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3350
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 4.547521600727603e-4
allele num: 4398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26322
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 468
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.48e-1

QD
type: SiteQuality
SIO_000300: 4.26e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.347e0

MQ
type: SiteQuality
SIO_000300: 5.933e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.815e0

MQRankSum
type: SiteQuality
SIO_000300: 7.78e-1

DP
type: SiteQuality
SIO_000300: 1.019812e6

FS
type: SiteQuality
SIO_000300: 3.478e0

GenotypeQuality
all individuals: 455
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 521
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GenotypeQuality
all individuals: 408
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 954
bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
all individuals: 1201
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 30020
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5444
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5938
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4742
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.54e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.17e1

MQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.7e0

DP
type: SiteQuality
SIO_000300: 1.046857e6

GenotypeQuality
all individuals: 721
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 675
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GenotypeQuality
all individuals: 436
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GenotypeQuality
all individuals: 13787
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3694
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 6.105006105006105e-4
allele num: 4914
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3786
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6124
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.344e1

DP
type: SiteQuality
SIO_000300: 1.068133e6

FS
type: SiteQuality
SIO_000300: 3.375e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-1

GenotypeQuality
all individuals: 724
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 673
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GenotypeQuality
all individuals: 75
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GenotypeQuality
all individuals: 699
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GenotypeQuality
all individuals: 436
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GenotypeQuality
all individuals: 517
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GenotypeQuality
all individuals: 201
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GenotypeQuality
all individuals: 766
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14302
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variant carriers: 0

GenotypeQuality
all individuals: 1287
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variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3770
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30380
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.997602876548142e-4
allele num: 5006
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6248
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.506265664160401e-4
allele num: 3990
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10438
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

QD
type: SiteQuality
SIO_000300: 1.192e1

VQSLOD
type: SiteQuality
SIO_000300: 3.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

DP
type: SiteQuality
SIO_000300: 1.075698e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

GenotypeQuality
all individuals: 189
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14801
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4026
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6268
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.984914648670107e-4
allele num: 5038
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3784
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10464
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e0

FS
type: SiteQuality
SIO_000300: 1.288e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.58e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.646e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.59e-1

DP
type: SiteQuality
SIO_000300: 1.078437e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e-2

QD
type: SiteQuality
SIO_000300: 1.18e1

GenotypeQuality
all individuals: 307
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 676
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 15026
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29417
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 565
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5479
bin: 9.75e1
variant carriers: 46

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5080
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30918
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3830
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10494
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 1.203659123736158e-3
allele num: 4154
num of homozygotes: 0

African
type: Population
allele count: 43
allele frequency: 6.801645049035116e-3
allele num: 6322
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.68e-1

FS
type: SiteQuality
SIO_000300: 5.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.9e-2

DP
type: SiteQuality
SIO_000300: 1.083732e6

QD
type: SiteQuality
SIO_000300: 1.325e1

VQSLOD
type: SiteQuality
SIO_000300: 3.76e0

GenotypeQuality
all individuals: 243
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 830
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1654
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.222895449271625e-5
allele num: 31028
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3858
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4192
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

FS
type: SiteQuality
SIO_000300: 2.51e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.292e0

MQRankSum
type: SiteQuality
SIO_000300: -9.389999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.387e-1

QD
type: SiteQuality
SIO_000300: 9.130000000000001e0

DP
type: SiteQuality
SIO_000300: 1.081546e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.340000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.26e0

GenotypeQuality
all individuals: 336
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1287
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1746
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5439
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 680
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29870
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5128
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3882
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.491268033409264e-5
allele num: 10536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6320
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.008e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.588e0

MQRankSum
type: SiteQuality
SIO_000300: 3.18e-1

DP
type: SiteQuality
SIO_000300: 1.081466e6