2-50282199-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50282199
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50282199
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 57492
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3719-1471C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3719-17C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.773-1471C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3719-1471C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3839-17C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3695-17C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.614-1471C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3695-17C>G
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 24184
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4393
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1834
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2023
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1492
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

2-50282200-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50282200
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50282200
    reference: chr 2
allele count: 1
allele frequency: 1.7481906227055e-5
allele num: 57202
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3839-18T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3695-18T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3695-18T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3719-1472T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3719-18T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.773-1472T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3719-1472T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.614-1472T>C
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24093
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7426
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15087
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2065
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30835
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2463
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

2-50282205-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50282205
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50282205
    reference: chr 2
allele count: 1
allele frequency: 1.83116645303058e-5
allele num: 54610
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.614-1477A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3839-23A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.773-1477A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3719-1477A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3695-23A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3719-23A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3695-23A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3719-1477A>G
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3004
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23716
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14437
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9037
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2108
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3247
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2135
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2453
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2214
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD

2-50282208-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50282208
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50282208
    reference: chr 2
allele count: 1
allele frequency: 1.907013997482742e-5
allele num: 52438
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3719-1480A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3695-26A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.773-1480A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3695-26A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.614-1480A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3839-26A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3719-26A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3719-1480A>G
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10085
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23632
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2692
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13757
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2422
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2890
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4393
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26622
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10902
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum

2-50282218-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50282218
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50282218
    reference: chr 2
allele count: 1
allele frequency: 2.212683099526486e-5
allele num: 45194
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.614-1490A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3695-36A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3719-36A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3839-36A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.773-1490A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3695-36A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3719-1490A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3719-1490A>G
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24850
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10684
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2185
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5360
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

2-50318415-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318415
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318415
    reference: chr 2
allele count: 16
allele frequency: 1.320851288655539e-4
allele num: 121134
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3718+46A>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3694+46A>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3694+46A>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.772+46A>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3718+46A>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3838+46A>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.613+46A>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3718+46A>T
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3812
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15212
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17854
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24074
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11887
  bin: 9.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1405
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

2-50318415-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318415
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318415
    reference: chr 2
allele count: 1
allele frequency: 8.255320554097116e-6
allele num: 121134
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3694+46A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3718+46A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.772+46A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3694+46A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.613+46A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3838+46A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3718+46A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3718+46A>G
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3812
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15212
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17854
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9241
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2108
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3223
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: T
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

2-50318418-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318418
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318418
    reference: chr 2
allele count: 2
allele frequency: 1.650900566258894e-5
allele num: 121146
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3718+43C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3718+43C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.613+43C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.772+43C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3694+43C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3838+43C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3694+43C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3718+43C>G
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3086
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7881
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3900
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15226
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1405
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11873
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

2-50318419-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318419
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318419
    reference: chr 2
allele count: 1
allele frequency: 8.254366559910193e-6
allele num: 121148
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.772+42A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3838+42A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3718+42A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3694+42A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3718+42A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3694+42A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.613+42A>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3718+42A>G
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17875
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3086
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4758
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15230
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7879
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24210
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2110
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3156
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11872
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1406
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD

2-50318423-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318423
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318423
    reference: chr 2
allele count: 1
allele frequency: 8.253140319891718e-6
allele num: 121166
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.613+38A>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.772+38A>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3718+38A>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3694+38A>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3838+38A>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3694+38A>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3718+38A>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3718+38A>T
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3998
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17903
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15245
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3087
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7881
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24290
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11872
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4485
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-50318429-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318429
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318429
    reference: chr 2
allele count: 1
allele frequency: 8.250416646040625e-6
allele num: 121206
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3718+32T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3694+32T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.772+32T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.613+32T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3838+32T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3694+32T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3718+32T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3718+32T>C
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15255
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17952
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3089
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4756
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3169
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2113
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

2-50318439-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318439
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318439
    reference: chr 2
allele count: 3
allele frequency: 2.473533194815474e-5
allele num: 121284
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.772+22G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3718+22G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3694+22G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3718+22G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3838+22G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3694+22G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3718+22G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.613+22G>A
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4761
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15276
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4398
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9307
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3240
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1409
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

2-50318440-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318440
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318440
    reference: chr 2
allele count: 3
allele frequency: 2.473247704001715e-5
allele num: 121298
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.613+21C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3838+21C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.772+21C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3694+21C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3694+21C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3718+21C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3718+21C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3718+21C>T
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7886
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4414
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4762
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15279
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4493
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9314
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3240
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3177
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1410
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD

2-50318448-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318448
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318448
    reference: chr 2
allele count: 1
allele frequency: 8.240762105679534e-6
allele num: 121348
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3694+13A>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3718+13A>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.613+13A>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.772+13A>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3718+13A>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3694+13A>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3838+13A>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3718+13A>T
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18036
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7887
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4761
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9329
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3182
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2114
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

2-50318449-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318449
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318449
    reference: chr 2
allele count: 2
allele frequency: 1.648098094798602e-5
allele num: 121352
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.772+12A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3718+12A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3718+12A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3694+12A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3838+12A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3694+12A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.613+12A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3718+12A>C
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4491
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4761
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18039
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4493
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3182
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2114
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

2-50318454-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318454
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318454
    reference: chr 2
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3838+7A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3694+7A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3694+7A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.772+7A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.613+7A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3718+7A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3718+7A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3718+7A>C
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4762
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7889
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15294
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3244
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24958
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
hgvs: c.3838+7A>C
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

2-50318455-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318455
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318455
    reference: chr 2
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3718+6C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3694+6C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3718+6C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.613+6C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.772+6C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3838+6C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3718+6C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3694+6C>G
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15295
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4494
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2114
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11870
  bin: 9.75e1
  variant carriers: 1
hgvs: c.3838+6C>G
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

2-50318462-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318462
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318462
    reference: chr 2
allele count: 2
allele frequency: 1.64766361299677e-5
allele num: 121384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3717A>T
  hgvsp: ENST00000401669.2:c.3717A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.771A>T
  hgvsp: ENST00000401710.1:c.771A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3717A>T
  hgvsp: ENST00000406859.3:c.3717A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.612A>T
  hgvsp: ENST00000342183.5:c.612A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3693A>T
  hgvsp: ENST00000405472.3:c.3693A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3693A>T
  hgvsp: ENST00000402717.3:c.3693A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3717A>T
  hgvsp: ENST00000406316.2:c.3717A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3837A>T
  hgvsp: ENST00000404971.1:c.3837A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4492
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7894
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18064
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4762
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3190
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: c.3837A>T
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

2-50318472-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318472
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318472
    reference: chr 2
allele count: 3
allele frequency: 2.471251112063001e-5
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3707G>A
  hgvsp: ENSP00000385017.2:p.Arg1236His
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.761G>A
  hgvsp: ENSP00000385580.1:p.Arg254His
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.602G>A
  hgvsp: ENSP00000341184.5:p.Arg201His
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3683G>A
  hgvsp: ENSP00000385434.3:p.Arg1228His
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3827G>A
  hgvsp: ENSP00000385142.1:p.Arg1276His
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3707G>A
  hgvsp: ENSP00000385681.3:p.Arg1236His
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3683G>A
  hgvsp: ENSP00000434015.1:p.Arg1228His
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3707G>A
  hgvsp: ENSP00000384311.2:p.Arg1236His
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15307
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18091
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4468
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4762
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3089
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4508
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1410
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg1276His
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS

2-50318476-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318476
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318476
    reference: chr 2
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3679G>A
  hgvsp: ENSP00000385434.3:p.Glu1227Lys
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3679G>A
  hgvsp: ENSP00000434015.1:p.Glu1227Lys
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3823G>A
  hgvsp: ENSP00000385142.1:p.Glu1275Lys
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3703G>A
  hgvsp: ENSP00000384311.2:p.Glu1235Lys
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.598G>A
  hgvsp: ENSP00000341184.5:p.Glu200Lys
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3703G>A
  hgvsp: ENSP00000385681.3:p.Glu1235Lys
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.757G>A
  hgvsp: ENSP00000385580.1:p.Glu253Lys
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3703G>A
  hgvsp: ENSP00000385017.2:p.Glu1235Lys
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15307
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4465
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3195
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3245
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2114
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11868
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Glu1275Lys
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-50318477-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318477
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318477
    reference: chr 2
allele count: 3
allele frequency: 2.471251112063001e-5
allele num: 121396
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3678C>G
  hgvsp: ENSP00000385434.3:p.Ile1226Met
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3702C>G
  hgvsp: ENSP00000385681.3:p.Ile1234Met
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3678C>G
  hgvsp: ENSP00000434015.1:p.Ile1226Met
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3822C>G
  hgvsp: ENSP00000385142.1:p.Ile1274Met
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.756C>G
  hgvsp: ENSP00000385580.1:p.Ile252Met
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3702C>G
  hgvsp: ENSP00000384311.2:p.Ile1234Met
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3702C>G
  hgvsp: ENSP00000385017.2:p.Ile1234Met
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.597C>G
  hgvsp: ENSP00000341184.5:p.Ile199Met
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4461
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7895
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15309
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4763
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3245
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4507
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile1274Met
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

2-50318477-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318477
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318477
    reference: chr 2
allele count: 2
allele frequency: 1.647500741375333e-5
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3702C>A
  hgvsp: ENST00000401669.2:c.3702C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3822C>A
  hgvsp: ENST00000404971.1:c.3822C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3702C>A
  hgvsp: ENST00000406859.3:c.3702C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.756C>A
  hgvsp: ENST00000401710.1:c.756C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.597C>A
  hgvsp: ENST00000342183.5:c.597C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3678C>A
  hgvsp: ENST00000405472.3:c.3678C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3702C>A
  hgvsp: ENST00000406316.2:c.3702C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3678C>A
  hgvsp: ENST00000402717.3:c.3678C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15309
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7895
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4461
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4507
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ile1274Ile
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/2-50318482-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318482
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318482
    reference: chr 2
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3697G>T
  hgvsp: ENSP00000385017.2:p.Val1233Leu
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3817G>T
  hgvsp: ENSP00000385142.1:p.Val1273Leu
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3673G>T
  hgvsp: ENSP00000385434.3:p.Val1225Leu
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.751G>T
  hgvsp: ENSP00000385580.1:p.Val251Leu
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3697G>T
  hgvsp: ENSP00000385681.3:p.Val1233Leu
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3697G>T
  hgvsp: ENSP00000384311.2:p.Val1233Leu
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.592G>T
  hgvsp: ENSP00000341184.5:p.Val198Leu
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3673G>T
  hgvsp: ENSP00000434015.1:p.Val1225Leu
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7896
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4464
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4764
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val1273Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ

2-50318483-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318483
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318483
    reference: chr 2
allele count: 2
allele frequency: 1.647473599235572e-5
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3672A>G
  hgvsp: ENST00000405472.3:c.3672A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3696A>G
  hgvsp: ENST00000401669.2:c.3696A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3672A>G
  hgvsp: ENST00000402717.3:c.3672A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.591A>G
  hgvsp: ENST00000342183.5:c.591A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3816A>G
  hgvsp: ENST00000404971.1:c.3816A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3696A>G
  hgvsp: ENST00000406316.2:c.3696A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.750A>G
  hgvsp: ENST00000401710.1:c.750A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3696A>G
  hgvsp: ENST00000406859.3:c.3696A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7897
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4465
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4764
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18101
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15310
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1410
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro1272Pro
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP

2-50318484-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318484
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318484
    reference: chr 2
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.749C>G
  hgvsp: ENSP00000385580.1:p.Pro250Arg
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3815C>G
  hgvsp: ENSP00000385142.1:p.Pro1272Arg
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3695C>G
  hgvsp: ENSP00000385017.2:p.Pro1232Arg
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3695C>G
  hgvsp: ENSP00000385681.3:p.Pro1232Arg
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3671C>G
  hgvsp: ENSP00000434015.1:p.Pro1224Arg
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3671C>G
  hgvsp: ENSP00000385434.3:p.Pro1224Arg
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3695C>G
  hgvsp: ENSP00000384311.2:p.Pro1232Arg
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.590C>G
  hgvsp: ENSP00000341184.5:p.Pro197Arg
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7898
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18101
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4464
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15312
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11861
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9352
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro1272Arg
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

2-50318504-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318504
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318504
    reference: chr 2
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3675G>A
  hgvsp: ENST00000406316.2:c.3675G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3675G>A
  hgvsp: ENST00000401669.2:c.3675G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3651G>A
  hgvsp: ENST00000402717.3:c.3651G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3651G>A
  hgvsp: ENST00000405472.3:c.3651G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.570G>A
  hgvsp: ENST00000342183.5:c.570G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.729G>A
  hgvsp: ENST00000401710.1:c.729G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3795G>A
  hgvsp: ENST00000404971.1:c.3795G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3675G>A
  hgvsp: ENST00000406859.3:c.3675G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7899
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18119
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4443
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15312
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4763
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24972
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3202
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3245
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr1265Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

2-50318507-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318507
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318507
    reference: chr 2
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.567C>T
  hgvsp: ENST00000342183.5:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3672C>T
  hgvsp: ENST00000406316.2:c.3672C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3672C>T
  hgvsp: ENST00000401669.2:c.3672C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3792C>T
  hgvsp: ENST00000404971.1:c.3792C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3648C>T
  hgvsp: ENST00000402717.3:c.3648C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3672C>T
  hgvsp: ENST00000406859.3:c.3672C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.726C>T
  hgvsp: ENST00000401710.1:c.726C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3648C>T
  hgvsp: ENST00000405472.3:c.3648C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15311
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7899
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4442
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18119
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24977
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala1264Ala
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

2-50318507-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318507
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318507
    reference: chr 2
allele count: 3
allele frequency: 2.471291826614165e-5
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3792C>A
  hgvsp: ENST00000404971.1:c.3792C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3672C>A
  hgvsp: ENST00000401669.2:c.3672C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.726C>A
  hgvsp: ENST00000401710.1:c.726C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3648C>A
  hgvsp: ENST00000405472.3:c.3648C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3648C>A
  hgvsp: ENST00000402717.3:c.3648C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3672C>A
  hgvsp: ENST00000406316.2:c.3672C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.567C>A
  hgvsp: ENST00000342183.5:c.567C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3672C>A
  hgvsp: ENST00000406859.3:c.3672C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15311
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7899
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4442
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18119
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2115
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24977
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala1264Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

2-50318525-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318525
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318525
    reference: chr 2
allele count: 3
allele frequency: 2.471658317954126e-5
allele num: 121376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3654G>A
  hgvsp: ENST00000401669.2:c.3654G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3654G>A
  hgvsp: ENST00000406316.2:c.3654G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3774G>A
  hgvsp: ENST00000404971.1:c.3774G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3654G>A
  hgvsp: ENST00000406859.3:c.3654G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3630G>A
  hgvsp: ENST00000402717.3:c.3630G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.549G>A
  hgvsp: ENST00000342183.5:c.549G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.708G>A
  hgvsp: ENST00000401710.1:c.708G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3630G>A
  hgvsp: ENST00000405472.3:c.3630G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7903
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15313
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18116
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr1258Thr
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS

2-50318526-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318526
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318526
    reference: chr 2
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3653C>T
  hgvsp: ENSP00000385017.2:p.Thr1218Met
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.548C>T
  hgvsp: ENSP00000341184.5:p.Thr183Met
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3629C>T
  hgvsp: ENSP00000434015.1:p.Thr1210Met
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.707C>T
  hgvsp: ENSP00000385580.1:p.Thr236Met
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3773C>T
  hgvsp: ENSP00000385142.1:p.Thr1258Met
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3653C>T
  hgvsp: ENSP00000384311.2:p.Thr1218Met
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3629C>T
  hgvsp: ENSP00000385434.3:p.Thr1210Met
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3653C>T
  hgvsp: ENSP00000385681.3:p.Thr1218Met
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4764
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4431
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7905
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18118
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9358
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24964
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr1258Met
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

2-50318528-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318528
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318528
    reference: chr 2
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3627C>T
  hgvsp: ENST00000402717.3:c.3627C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3651C>T
  hgvsp: ENST00000401669.2:c.3651C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3651C>T
  hgvsp: ENST00000406316.2:c.3651C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3771C>T
  hgvsp: ENST00000404971.1:c.3771C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.705C>T
  hgvsp: ENST00000401710.1:c.705C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.546C>T
  hgvsp: ENST00000342183.5:c.546C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3627C>T
  hgvsp: ENST00000405472.3:c.3627C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3651C>T
  hgvsp: ENST00000406859.3:c.3651C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7905
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18119
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11858
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Phe1257Phe
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ

2-50318532-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318532
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318532
    reference: chr 2
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.542G>A
  hgvsp: ENSP00000341184.5:p.Arg181His
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3647G>A
  hgvsp: ENSP00000385017.2:p.Arg1216His
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3623G>A
  hgvsp: ENSP00000434015.1:p.Arg1208His
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3767G>A
  hgvsp: ENSP00000385142.1:p.Arg1256His
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3647G>A
  hgvsp: ENSP00000384311.2:p.Arg1216His
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.701G>A
  hgvsp: ENSP00000385580.1:p.Arg234His
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3623G>A
  hgvsp: ENSP00000385434.3:p.Arg1208His
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3647G>A
  hgvsp: ENSP00000385681.3:p.Arg1216His
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4764
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15315
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7904
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11857
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9358
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg1256His
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

2-50318539-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318539
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318539
    reference: chr 2
allele count: 4
allele frequency: 3.295653033648617e-5
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.694G>A
  hgvsp: ENSP00000385580.1:p.Val232Ile
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3760G>A
  hgvsp: ENSP00000385142.1:p.Val1254Ile
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3640G>A
  hgvsp: ENSP00000385017.2:p.Val1214Ile
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3616G>A
  hgvsp: ENSP00000385434.3:p.Val1206Ile
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3640G>A
  hgvsp: ENSP00000385681.3:p.Val1214Ile
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.535G>A
  hgvsp: ENSP00000341184.5:p.Val179Ile
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3640G>A
  hgvsp: ENSP00000384311.2:p.Val1214Ile
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3616G>A
  hgvsp: ENSP00000434015.1:p.Val1206Ile
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18126
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15315
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7903
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val1254Ile
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD

http://identifiers.org/exac.variant/2-50318549-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318549
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318549
    reference: chr 2
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.684G>T
  hgvsp: ENST00000401710.1:c.684G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3630G>T
  hgvsp: ENST00000406859.3:c.3630G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3606G>T
  hgvsp: ENST00000405472.3:c.3606G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3750G>T
  hgvsp: ENST00000404971.1:c.3750G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3630G>T
  hgvsp: ENST00000401669.2:c.3630G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3606G>T
  hgvsp: ENST00000402717.3:c.3606G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.525G>T
  hgvsp: ENST00000342183.5:c.525G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3630G>T
  hgvsp: ENST00000406316.2:c.3630G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4414
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7902
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15316
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4767
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18131
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9357
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly1250Gly
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-50318549-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318549
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318549
    reference: chr 2
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.525G>A
  hgvsp: ENST00000342183.5:c.525G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3606G>A
  hgvsp: ENST00000405472.3:c.3606G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3630G>A
  hgvsp: ENST00000406859.3:c.3630G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3606G>A
  hgvsp: ENST00000402717.3:c.3606G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3630G>A
  hgvsp: ENST00000401669.2:c.3630G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3750G>A
  hgvsp: ENST00000404971.1:c.3750G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3630G>A
  hgvsp: ENST00000406316.2:c.3630G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.684G>A
  hgvsp: ENST00000401710.1:c.684G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15316
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4414
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18131
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4767
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7902
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2116
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly1250Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD

2-50318563-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318563
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318563
    reference: chr 2
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3616A>G
  hgvsp: ENSP00000385017.2:p.Ile1206Val
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3736A>G
  hgvsp: ENSP00000385142.1:p.Ile1246Val
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3592A>G
  hgvsp: ENSP00000385434.3:p.Ile1198Val
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.511A>G
  hgvsp: ENSP00000341184.5:p.Ile171Val
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.670A>G
  hgvsp: ENSP00000385580.1:p.Ile224Val
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3592A>G
  hgvsp: ENSP00000434015.1:p.Ile1198Val
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3616A>G
  hgvsp: ENSP00000385681.3:p.Ile1206Val
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3616A>G
  hgvsp: ENSP00000384311.2:p.Ile1206Val
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4419
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18123
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7904
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1410
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9354
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4507
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile1246Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD

2-50318567-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318567
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318567
    reference: chr 2
allele count: 1
allele frequency: 8.240354664864776e-6
allele num: 121354
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.666T>C
  hgvsp: ENST00000401710.1:c.666T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3588T>C
  hgvsp: ENST00000405472.3:c.3588T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3612T>C
  hgvsp: ENST00000406316.2:c.3612T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3732T>C
  hgvsp: ENST00000404971.1:c.3732T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3588T>C
  hgvsp: ENST00000402717.3:c.3588T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3612T>C
  hgvsp: ENST00000406859.3:c.3612T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.507T>C
  hgvsp: ENST00000342183.5:c.507T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3612T>C
  hgvsp: ENST00000401669.2:c.3612T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4422
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15315
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7903
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3200
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn1244Asn
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

2-50318567-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318567
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318567
    reference: chr 2
allele count: 2
allele frequency: 1.648070932972955e-5
allele num: 121354
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3732T>A
  hgvsp: ENSP00000385142.1:p.Asn1244Lys
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3612T>A
  hgvsp: ENSP00000384311.2:p.Asn1204Lys
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3612T>A
  hgvsp: ENSP00000385681.3:p.Asn1204Lys
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.666T>A
  hgvsp: ENSP00000385580.1:p.Asn222Lys
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3588T>A
  hgvsp: ENSP00000385434.3:p.Asn1196Lys
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3612T>A
  hgvsp: ENSP00000385017.2:p.Asn1204Lys
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.507T>A
  hgvsp: ENSP00000341184.5:p.Asn169Lys
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3588T>A
  hgvsp: ENSP00000434015.1:p.Asn1196Lys
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15315
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4422
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7903
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9355
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24970
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asn1244Lys
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

2-50318568-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318568
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318568
    reference: chr 2
allele count: 1
allele frequency: 8.240354664864776e-6
allele num: 121354
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3587A>G
  hgvsp: ENSP00000385434.3:p.Asn1196Ser
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3611A>G
  hgvsp: ENSP00000385017.2:p.Asn1204Ser
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3611A>G
  hgvsp: ENSP00000385681.3:p.Asn1204Ser
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.665A>G
  hgvsp: ENSP00000385580.1:p.Asn222Ser
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.506A>G
  hgvsp: ENSP00000341184.5:p.Asn169Ser
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3731A>G
  hgvsp: ENSP00000385142.1:p.Asn1244Ser
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3587A>G
  hgvsp: ENSP00000434015.1:p.Asn1196Ser
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3611A>G
  hgvsp: ENSP00000384311.2:p.Asn1204Ser
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7903
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4422
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18123
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3201
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asn1244Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

2-50318571-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318571
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318571
    reference: chr 2
allele count: 1
allele frequency: 8.240626287597857e-6
allele num: 121350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3608C>T
  hgvsp: ENSP00000385681.3:p.Ser1203Phe
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.662C>T
  hgvsp: ENSP00000385580.1:p.Ser221Phe
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3608C>T
  hgvsp: ENSP00000384311.2:p.Ser1203Phe
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3728C>T
  hgvsp: ENSP00000385142.1:p.Ser1243Phe
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3584C>T
  hgvsp: ENSP00000385434.3:p.Ser1195Phe
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3608C>T
  hgvsp: ENSP00000385017.2:p.Ser1203Phe
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.503C>T
  hgvsp: ENSP00000341184.5:p.Ser168Phe
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3584C>T
  hgvsp: ENSP00000434015.1:p.Ser1195Phe
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18121
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7903
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15318
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4422
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3201
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2116
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24967
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser1243Phe
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

2-50318576-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318576
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318576
    reference: chr 2
allele count: 2
allele frequency: 1.648179585647652e-5
allele num: 121346
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3579A>G
  hgvsp: ENST00000402717.3:c.3579A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.498A>G
  hgvsp: ENST00000342183.5:c.498A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3603A>G
  hgvsp: ENST00000406316.2:c.3603A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3603A>G
  hgvsp: ENST00000401669.2:c.3603A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3723A>G
  hgvsp: ENST00000404971.1:c.3723A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.657A>G
  hgvsp: ENST00000401710.1:c.657A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3603A>G
  hgvsp: ENST00000406859.3:c.3603A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3579A>G
  hgvsp: ENST00000405472.3:c.3579A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4420
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7902
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3243
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9355
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu1241Glu
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-50318578-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318578
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318578
    reference: chr 2
allele count: 1
allele frequency: 8.240762105679534e-6
allele num: 121348
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3601G>A
  hgvsp: ENSP00000384311.2:p.Glu1201Lys
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3601G>A
  hgvsp: ENSP00000385017.2:p.Glu1201Lys
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3577G>A
  hgvsp: ENSP00000385434.3:p.Glu1193Lys
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3721G>A
  hgvsp: ENSP00000385142.1:p.Glu1241Lys
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.496G>A
  hgvsp: ENSP00000341184.5:p.Glu166Lys
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3577G>A
  hgvsp: ENSP00000434015.1:p.Glu1193Lys
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.655G>A
  hgvsp: ENSP00000385580.1:p.Glu219Lys
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3601G>A
  hgvsp: ENSP00000385681.3:p.Glu1201Lys
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4420
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7902
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15316
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3201
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1410
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24974
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu1241Lys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

2-50318584-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318584
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318584
    reference: chr 2
allele count: 41
allele frequency: 3.379046614360124e-4
allele num: 121336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.490G>A
  hgvsp: ENSP00000341184.5:p.Ala164Thr
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3571G>A
  hgvsp: ENSP00000434015.1:p.Ala1191Thr
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3571G>A
  hgvsp: ENSP00000385434.3:p.Ala1191Thr
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.649G>A
  hgvsp: ENSP00000385580.1:p.Ala217Thr
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3595G>A
  hgvsp: ENSP00000385017.2:p.Ala1199Thr
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3595G>A
  hgvsp: ENSP00000384311.2:p.Ala1199Thr
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3715G>A
  hgvsp: ENSP00000385142.1:p.Ala1239Thr
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3595G>A
  hgvsp: ENSP00000385681.3:p.Ala1199Thr
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7903
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15315
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4414
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18124
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1410
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24965
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala1239Thr
num of homozygotes: 1
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

2-50318585-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318585
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318585
    reference: chr 2
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3570C>A
  hgvsp: ENST00000402717.3:c.3570C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3714C>A
  hgvsp: ENST00000404971.1:c.3714C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.489C>A
  hgvsp: ENST00000342183.5:c.489C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3594C>A
  hgvsp: ENST00000406859.3:c.3594C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.648C>A
  hgvsp: ENST00000401710.1:c.648C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3594C>A
  hgvsp: ENST00000401669.2:c.3594C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3570C>A
  hgvsp: ENST00000405472.3:c.3570C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3594C>A
  hgvsp: ENST00000406316.2:c.3594C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4418
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3090
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18138
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7906
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24979
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile1238Ile
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP

2-50318594-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318594
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318594
    reference: chr 2
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3585A>C
  hgvsp: ENST00000401669.2:c.3585A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3561A>C
  hgvsp: ENST00000402717.3:c.3561A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3561A>C
  hgvsp: ENST00000405472.3:c.3561A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3585A>C
  hgvsp: ENST00000406316.2:c.3585A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.480A>C
  hgvsp: ENST00000342183.5:c.480A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.639A>C
  hgvsp: ENST00000401710.1:c.639A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3705A>C
  hgvsp: ENST00000404971.1:c.3705A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3585A>C
  hgvsp: ENST00000406859.3:c.3585A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18137
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3090
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4414
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7906
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3246
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2116
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr1235Thr
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD

2-50318597-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318597
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318597
    reference: chr 2
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3558G>C
  hgvsp: ENST00000405472.3:c.3558G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3558G>C
  hgvsp: ENST00000402717.3:c.3558G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3702G>C
  hgvsp: ENST00000404971.1:c.3702G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.636G>C
  hgvsp: ENST00000401710.1:c.636G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3582G>C
  hgvsp: ENST00000406316.2:c.3582G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.477G>C
  hgvsp: ENST00000342183.5:c.477G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3582G>C
  hgvsp: ENST00000406859.3:c.3582G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3582G>C
  hgvsp: ENST00000401669.2:c.3582G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15326
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3090
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7906
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18139
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4509
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3246
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly1234Gly
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/2-50318612-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318612
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318612
    reference: chr 2
allele count: 1
allele frequency: 8.24347940778844e-6
allele num: 121308
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3543T>G
  hgvsp: ENST00000402717.3:c.3543T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3567T>G
  hgvsp: ENST00000401669.2:c.3567T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3567T>G
  hgvsp: ENST00000406859.3:c.3567T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.621T>G
  hgvsp: ENST00000401710.1:c.621T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3567T>G
  hgvsp: ENST00000406316.2:c.3567T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3687T>G
  hgvsp: ENST00000404971.1:c.3687T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.462T>G
  hgvsp: ENST00000342183.5:c.462T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3543T>G
  hgvsp: ENST00000405472.3:c.3543T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4768
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4417
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15320
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18131
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3090
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7904
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9361
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4508
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val1229Val
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

2-50318616-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318616
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318616
    reference: chr 2
allele count: 1
allele frequency: 8.243887157672586e-6
allele num: 121302
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3563G>C
  hgvsp: ENSP00000384311.2:p.Gly1188Ala
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3683G>C
  hgvsp: ENSP00000385142.1:p.Gly1228Ala
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3563G>C
  hgvsp: ENSP00000385681.3:p.Gly1188Ala
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3539G>C
  hgvsp: ENSP00000434015.1:p.Gly1180Ala
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3563G>C
  hgvsp: ENSP00000385017.2:p.Gly1188Ala
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.617G>C
  hgvsp: ENSP00000385580.1:p.Gly206Ala
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3539G>C
  hgvsp: ENSP00000385434.3:p.Gly1180Ala
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.458G>C
  hgvsp: ENSP00000341184.5:p.Gly153Ala
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15321
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7904
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4768
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4406
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3090
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18126
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2116
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4509
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly1228Ala
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/2-50318617-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318617
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318617
    reference: chr 2
allele count: 1
allele frequency: 8.244159013339049e-6
allele num: 121298
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.616G>T
  hgvsp: ENSP00000385580.1:p.Gly206Ter
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3538G>T
  hgvsp: ENSP00000385434.3:p.Gly1180Ter
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3562G>T
  hgvsp: ENSP00000385017.2:p.Gly1188Ter
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3682G>T
  hgvsp: ENSP00000385142.1:p.Gly1228Ter
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3562G>T
  hgvsp: ENSP00000385681.3:p.Gly1188Ter
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3538G>T
  hgvsp: ENSP00000434015.1:p.Gly1180Ter
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3562G>T
  hgvsp: ENSP00000384311.2:p.Gly1188Ter
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.457G>T
  hgvsp: ENSP00000341184.5:p.Gly153Ter
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3090
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7903
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4768
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4406
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15321
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24958
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9360
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3244
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly1228Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

2-50318620-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318620
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318620
    reference: chr 2
allele count: 1
allele frequency: 8.244430886935875e-6
allele num: 121294
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3535A>G
  hgvsp: ENSP00000385434.3:p.Ile1179Val
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3679A>G
  hgvsp: ENSP00000385142.1:p.Ile1227Val
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3559A>G
  hgvsp: ENSP00000385681.3:p.Ile1187Val
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.454A>G
  hgvsp: ENSP00000341184.5:p.Ile152Val
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.613A>G
  hgvsp: ENSP00000385580.1:p.Ile205Val
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3535A>G
  hgvsp: ENSP00000434015.1:p.Ile1179Val
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3559A>G
  hgvsp: ENSP00000385017.2:p.Ile1187Val
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3559A>G
  hgvsp: ENSP00000384311.2:p.Ile1187Val
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7902
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3089
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4508
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile1227Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

2-50318629-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318629
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318629
    reference: chr 2
allele count: 1
allele frequency: 8.246606521416436e-6
allele num: 121262
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3670C>A
  hgvsp: ENSP00000385142.1:p.Gln1224Lys
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3550C>A
  hgvsp: ENSP00000385017.2:p.Gln1184Lys
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.604C>A
  hgvsp: ENSP00000385580.1:p.Gln202Lys
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3526C>A
  hgvsp: ENSP00000385434.3:p.Gln1176Lys
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3550C>A
  hgvsp: ENSP00000385681.3:p.Gln1184Lys
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3550C>A
  hgvsp: ENSP00000384311.2:p.Gln1184Lys
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.445C>A
  hgvsp: ENSP00000341184.5:p.Gln149Lys
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3526C>A
  hgvsp: ENSP00000434015.1:p.Gln1176Lys
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18103
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4764
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4408
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7902
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15305
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11802
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1410
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gln1224Lys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP

2-50318630-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318630
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318630
    reference: chr 2
allele count: 1
allele frequency: 8.246606521416436e-6
allele num: 121262
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3669C>T
  hgvsp: ENST00000404971.1:c.3669C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3549C>T
  hgvsp: ENST00000406316.2:c.3549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.444C>T
  hgvsp: ENST00000342183.5:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3525C>T
  hgvsp: ENST00000402717.3:c.3525C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3525C>T
  hgvsp: ENST00000405472.3:c.3525C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.603C>T
  hgvsp: ENST00000401710.1:c.603C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3549C>T
  hgvsp: ENST00000406859.3:c.3549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3549C>T
  hgvsp: ENST00000401669.2:c.3549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7900
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15305
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18104
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3087
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4764
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4409
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3198
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11801
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: c.3669C>T
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

2-50318635-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318635
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318635
    reference: chr 2
allele count: 1
allele frequency: 8.248919391559706e-6
allele num: 121228
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3547-3C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.442-3C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.601-3C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3667-3C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3547-3C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3523-3C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3547-3C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3523-3C>T
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7897
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18089
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4760
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15293
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3192
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
hgvs: c.3667-3C>T
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

2-50318638-AGAGAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318638
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318633
    reference: chr 2
allele count: 2
allele frequency: 1.650083329208125e-5
allele num: 121206
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3667-11_3667-7delCTCTC
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3547-11_3547-7delCTCTC
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3547-11_3547-7delCTCTC
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.601-11_601-7delCTCTC
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3523-11_3523-7delCTCTC
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3523-11_3523-7delCTCTC
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.442-11_442-7delCTCTC
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3547-11_3547-7delCTCTC
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4367
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15274
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18069
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
hgvs: c.3667-11_3667-7delCTCTC
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
reference allele: AGAGAG
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/2-50318642-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318642
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318642
    reference: chr 2
allele count: 5
allele frequency: 4.127455836222553e-5
allele num: 121140
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3523-10T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3547-10T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3547-10T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3523-10T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.601-10T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3667-10T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.442-10T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3547-10T>G
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15200
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3086
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18014
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7867
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4749
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3174
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11793
  bin: 9.75e1
  variant carriers: 5
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

http://identifiers.org/exac.variant/2-50318645-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318645
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318645
    reference: chr 2
allele count: 1
allele frequency: 8.258729477057249e-6
allele num: 121084
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3547-13T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3523-13T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3523-13T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.442-13T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3547-13T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3667-13T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.601-13T>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3547-13T>G
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4353
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4739
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15136
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17949
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3081
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24531
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

2-50318646-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318646
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318646
    reference: chr 2
allele count: 1
allele frequency: 8.258729477057249e-6
allele num: 121084
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3547-14C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3547-14C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3547-14C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3667-14C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3523-14C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.601-14C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.442-14C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3523-14C>T
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4360
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3081
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4737
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17955
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9217
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11783
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24569
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3163
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

2-50318648-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318648
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318648
    reference: chr 2
allele count: 1
allele frequency: 8.261595148791329e-6
allele num: 121042
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.601-16C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3547-16C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3523-16C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3523-16C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3667-16C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3547-16C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3547-16C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.442-16C>G
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4361
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15056
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3079
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4733
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3223
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2103
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3153
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

2-50318649-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318649
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318649
    reference: chr 2
allele count: 1
allele frequency: 8.262141216517673e-6
allele num: 121034
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3547-17C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3547-17C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.442-17C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3523-17C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.601-17C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3667-17C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3547-17C>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3523-17C>T
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7813
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4365
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15034
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4731
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17949
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3076
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3211
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2100
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3143
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4465
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

2-50318649-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318649
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318650
    reference: chr 2
allele count: 1
allele frequency: 8.262141216517673e-6
allele num: 121034
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3523-18dupT
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3667-18dupT
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3523-18dupT
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3547-18dupT
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.442-18dupT
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.601-18dupT
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3547-18dupT
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3547-18dupT
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17949
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4365
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4731
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7813
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15034
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3076
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3211
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2100
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1400
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-50318650-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318650
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318650
    reference: chr 2
allele count: 1
allele frequency: 8.26296045347127e-6
allele num: 121022
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3523-18T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.601-18T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.442-18T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3523-18T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3547-18T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3547-18T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3667-18T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3547-18T>C
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4375
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14984
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3071
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9173
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3207
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

2-50318651-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318651
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318651
    reference: chr 2
allele count: 1
allele frequency: 8.26405302216419e-6
allele num: 121006
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.601-19T>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3523-19T>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3523-19T>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3547-19T>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3547-19T>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3667-19T>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3547-19T>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.442-19T>A
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7788
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4713
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17873
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3069
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14933
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24359
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1398
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

2-50318657-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318657
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318657
    reference: chr 2
allele count: 3
allele frequency: 2.482210822439186e-5
allele num: 120860
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3547-25T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3547-25T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.601-25T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3523-25T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3547-25T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3667-25T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.442-25T>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3523-25T>C
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4267
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7318
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3055
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4595
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22581
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3008
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2068
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2744
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

2-50318658-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318658
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318658
    reference: chr 2
allele count: 9
allele frequency: 7.44626280343521e-5
allele num: 120866
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3523-26C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3667-26C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3547-26C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.442-26C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.601-26C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3523-26C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3547-26C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3547-26C>G
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7288
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17060
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3057
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13758
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4320
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3982
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1308
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8057
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

2-50318661-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318661
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318661
    reference: chr 2
allele count: 1716
allele frequency: 1.420388703108963e-2
allele num: 120812
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.442-29C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3547-29C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3523-29C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3667-29C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3547-29C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3523-29C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3547-29C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.601-29C>G
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 6.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 4563
  bin: 4.25e1
  variant carriers: 272
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 7251
  bin: 3.75e1
  variant carriers: 227
genotype depth: GenotypeDepth
  all individuals: 4453
  bin: 2.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 17158
  bin: 2.75e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 3061
  bin: 4.75e1
  variant carriers: 248
genotype depth: GenotypeDepth
  all individuals: 13643
  bin: 3.25e1
  variant carriers: 153
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 5.75e1
  variant carriers: 142
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 5.25e1
  variant carriers: 197
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 7.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 1.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 6.25e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7938
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1312
  bin: 2.25e1
  variant carriers: 1
num of homozygotes: 76
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum

2-50318670-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318670
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318670
    reference: chr 2
allele count: 1
allele frequency: 8.285141427364165e-6
allele num: 120698
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.442-38A>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3547-38A>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3547-38A>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3523-38A>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3547-38A>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.601-38A>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3667-38A>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3523-38A>T
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4535
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7015
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15683
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12652
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21070
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11120
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7834
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3930
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1748
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1312
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff

2-50318670-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318670
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318670
    reference: chr 2
allele count: 1
allele frequency: 8.285141427364165e-6
allele num: 120698
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.442-38A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3523-38A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3547-38A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3547-38A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.601-38A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3667-38A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3523-38A>C
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3547-38A>C
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12652
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7015
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4535
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15683
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1748
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1789
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2924
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21070
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum

2-50318680-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50318680
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50318680
    reference: chr 2
allele count: 2
allele frequency: 1.663865825859803e-5
allele num: 120202
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3547-48G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3547-48G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.601-48G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3547-48G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3523-48G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3667-48G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3523-48G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.442-48G>A
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2823
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11531
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6046
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10411
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9675
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4337
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3734
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3762
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1966
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2118
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2746
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/2-50463885-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50463885
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50463885
    reference: chr 2
allele count: 1
allele frequency: 8.80467704444601e-6
allele num: 113576
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3546+42G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3522+42G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.600+42G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3546+42G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3666+42G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3546+42G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000331040
  gene symbol: NRXN1
  hgvsc: ENST00000331040.5:n.2726+42G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.441+42G>T
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3522+42G>T
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9093
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21096
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7704
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5785
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2669
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2506
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

2-50463885-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50463885
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50463885
    reference: chr 2
allele count: 6
allele frequency: 5.282806226667606e-5
allele num: 113576
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.600+42G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3546+42G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000331040
  gene symbol: NRXN1
  hgvsc: ENST00000331040.5:n.2726+42G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3522+42G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3522+42G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3546+42G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3666+42G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3546+42G>A
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.441+42G>A
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5785
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21096
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7704
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9093
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1816
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2669
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2506
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5255
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

2-50463887-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50463887
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 50463887
    reference: chr 2
allele count: 1
allele frequency: 8.792909397861565e-6
allele num: 113728
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385142
  ensembl transcript: ENST00000404971
  gene symbol: NRXN1
  hgvsc: ENST00000404971.1:c.3666+40C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385434
  ensembl transcript: ENST00000402717
  gene symbol: NRXN1
  hgvsc: ENST00000402717.3:c.3522+40C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385017
  ensembl transcript: ENST00000401669
  gene symbol: NRXN1
  hgvsc: ENST00000401669.2:c.3546+40C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl transcript: ENST00000331040
  gene symbol: NRXN1
  hgvsc: ENST00000331040.5:n.2726+40C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000341184
  ensembl transcript: ENST00000342183
  gene symbol: NRXN1
  hgvsc: ENST00000342183.5:c.441+40C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000384311
  ensembl transcript: ENST00000406316
  gene symbol: NRXN1
  hgvsc: ENST00000406316.2:c.3546+40C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385681
  ensembl transcript: ENST00000406859
  gene symbol: NRXN1
  hgvsc: ENST00000406859.3:c.3546+40C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000385580
  ensembl transcript: ENST00000401710
  gene symbol: NRXN1
  hgvsc: ENST00000401710.1:c.600+40C>G
  variant of: http://identifiers.org/hgnc/8008
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000179915
  ensembl protein: ENSP00000434015
  ensembl transcript: ENST00000405472
  gene symbol: NRXN1
  hgvsc: ENST00000405472.3:c.3522+40C>G
  variant of: http://identifiers.org/hgnc/8008
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3299
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8515
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4854
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 963
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31190
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7616
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4013
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2444
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29744
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3972
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5320
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9960
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 472
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.789e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.491e0

MQ
type: SiteQuality
SIO_000300: 5.79e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.48e-1

DP
type: SiteQuality
SIO_000300: 8.52127e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.56e-2

QD
type: SiteQuality
SIO_000300: 8.83e0

GenotypeQuality
all individuals: 116
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1575
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1942
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7938
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4393
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 473
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3845
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 963
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3934
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.381805884342239e-5
allele num: 29570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9950
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5320
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.47456e5

MQRankSum
type: SiteQuality
SIO_000300: -4.7e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.272e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.098e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.58e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 6.68e0

GenotypeQuality
all individuals: 418
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 947
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28683
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9711
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 779
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 712
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4393
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.563537880407669e-5
allele num: 28062
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5100
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3696
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4086
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.036e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.84e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.304e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.33e-1

DP
type: SiteQuality
SIO_000300: 8.25456e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.49e0

GenotypeQuality
all individuals: 470
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2831
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2133
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 711
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2573
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 936
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3806
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4942
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.739156446305713e-5
allele num: 26744
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9672
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQRankSum
type: SiteQuality
SIO_000300: -6.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.07e-2

QD
type: SiteQuality
SIO_000300: 1.053e1

MQ
type: SiteQuality
SIO_000300: 5.845e1

VQSLOD
type: SiteQuality
SIO_000300: -1.448e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.10431e5

ClippingRankSum
type: SiteQuality
SIO_000300: -8.72e-1

GenotypeQuality
all individuals: 2127
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13572
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2253
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4541
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19291
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4393
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 418
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 709
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4426
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22678
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2746
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3002
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.092896174863388e-4
allele num: 9150
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.342e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.71e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.66e0

DP
type: SiteQuality
SIO_000300: 7.68054e5

MQRankSum
type: SiteQuality
SIO_000300: 6.53e-1

MQ
type: SiteQuality
SIO_000300: 5.922e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.86e-1

FS
type: SiteQuality
SIO_000300: 1.145e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.51e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.406e-1

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4479
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3223
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9241
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3158
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2108
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.671522719389525e-5
allele num: 11532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 15
allele frequency: 1.455180442374855e-3
allele num: 10308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.17e-1

MQ
type: SiteQuality
SIO_000300: 5.986e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.431e1

MQRankSum
type: SiteQuality
SIO_000300: 2.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

DP
type: SiteQuality
SIO_000300: 2.15813e6

VQSLOD
type: SiteQuality
SIO_000300: 5.35e0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3158
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4479
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11887
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 167
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1405
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24074
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.15813e6

MQ
type: SiteQuality
SIO_000300: 5.986e1

QD
type: SiteQuality
SIO_000300: 1.431e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.14e-1

BaseQRankSum
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SIO_000300: 3.58e0

VQSLOD
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SIO_000300: 5.35e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

GenotypeQuality
all individuals: 3157
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.001290554938624e-5
allele num: 66638
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e0

DP
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SIO_000300: 2.156978e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.779e0

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
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BaseQRankSum
type: SiteQuality
SIO_000300: -5.333e0

InbreedingCoeff
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QD
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MQ
type: SiteQuality
SIO_000300: 5.974e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500600240096038e-5
allele num: 66640
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.501e0

VQSLOD
type: SiteQuality
SIO_000300: 4.99e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 7.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e0

DP
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SIO_000300: 2.156807e6

MQ
type: SiteQuality
SIO_000300: 5.952e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.46e-1

QD
type: SiteQuality
SIO_000300: 1.756e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66642
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

FS
type: SiteQuality
SIO_000300: 1.294e0

DP
type: SiteQuality
SIO_000300: 2.157728e6

MQRankSum
type: SiteQuality
SIO_000300: -1.312e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

QD
type: SiteQuality
SIO_000300: 1.415e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.377e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.01e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.659508139937652e-5
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.159939e6

MQRankSum
type: SiteQuality
SIO_000300: -6.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.26e0

VQSLOD
type: SiteQuality
SIO_000300: -1.298e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.926e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.69e0

MQ
type: SiteQuality
SIO_000300: 5.918e1

QD
type: SiteQuality
SIO_000300: 1.65e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.312673450508788e-4
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.542e0

MQ
type: SiteQuality
SIO_000300: 5.988e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.172e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.97e-1

FS
type: SiteQuality
SIO_000300: 4.462e0

MQRankSum
type: SiteQuality
SIO_000300: 5.3e-2

DP
type: SiteQuality
SIO_000300: 2.163033e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.49829064955317e-5
allele num: 66692
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.968e1

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
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QD
type: SiteQuality
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
type: Population
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allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
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European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997512064986062e-5
allele num: 66722
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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QD
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FS
type: SiteQuality
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DP
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
allele num: 11564
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East Asian
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allele num: 8652
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African
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
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European (Finnish)
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MQ
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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FS
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MQRankSum
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QD
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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Other
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South Asian
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InbreedingCoeff
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MQRankSum
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FS
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DP
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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QD
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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African
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East Asian
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European (Finnish)
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European (Non-Finnish)
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FS
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DP
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BaseQRankSum
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QD
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ClippingRankSum
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MQ
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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European (Non-Finnish)
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East Asian
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South Asian
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Other
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QD
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InbreedingCoeff
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BaseQRankSum
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DP
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MQ
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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South Asian
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East Asian
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European (Finnish)
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European (Non-Finnish)
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ClippingRankSum
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DP
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MQ
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QD
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MQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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East Asian
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European (Non-Finnish)
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Latino
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Other
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African
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ReadPosRankSum
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FS
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DP
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VQSLOD
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ClippingRankSum
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QD
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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Latino
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European (Non-Finnish)
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African
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South Asian
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FS
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MQRankSum
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MQ
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BaseQRankSum
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QD
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VQSLOD
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ReadPosRankSum
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DP
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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East Asian
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African
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European (Non-Finnish)
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South Asian
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InbreedingCoeff
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MQRankSum
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VQSLOD
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BaseQRankSum
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DP
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ClippingRankSum
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ReadPosRankSum
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QD
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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Latino
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African
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European (Non-Finnish)
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South Asian
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MQ
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BaseQRankSum
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FS
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ReadPosRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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South Asian
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allele num: 16512
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East Asian
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Latino
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Other
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InbreedingCoeff
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BaseQRankSum
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QD
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FS
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MQ
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DP
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VQSLOD
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 8654
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European (Non-Finnish)
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allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Other
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ClippingRankSum
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FS
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QD
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DP
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MQRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele num: 16512
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Other
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BaseQRankSum
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MQ
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MQRankSum
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DP
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InbreedingCoeff
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SIO_000300: 0.0e0

ClippingRankSum
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FS
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ReadPosRankSum
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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African
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
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Other
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South Asian
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
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DP
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VQSLOD
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BaseQRankSum
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MQRankSum
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FS
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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East Asian
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DP
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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MQRankSum
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QD
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BaseQRankSum
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ClippingRankSum
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FS
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele num: 11550
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Other
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East Asian
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European (Finnish)
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European (Non-Finnish)
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South Asian
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African
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MQRankSum
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VQSLOD
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InbreedingCoeff
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FS
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ClippingRankSum
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MQ
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BaseQRankSum
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ReadPosRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

Latino
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Other
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East Asian
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European (Non-Finnish)
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South Asian
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African
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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FS
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MQRankSum
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QD
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DP
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MQ
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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Other
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South Asian
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East Asian
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European (Non-Finnish)
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ReadPosRankSum
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FS
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MQ
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ClippingRankSum
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QD
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MQRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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South Asian
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European (Finnish)
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Latino
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African
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European (Non-Finnish)
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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DP
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SIO_000300: 2.163636e6

FS
type: SiteQuality
SIO_000300: 2.019e0

QD
type: SiteQuality
SIO_000300: 1.079e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3244
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.28e0

QD
type: SiteQuality
SIO_000300: 1.284e1

MQRankSum
type: SiteQuality
SIO_000300: 3.08e-1

MQ
type: SiteQuality
SIO_000300: 5.986e1

FS
type: SiteQuality
SIO_000300: 8.8e-1

DP
type: SiteQuality
SIO_000300: 2.162957e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.991e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.42e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.91e-1

GenotypeQuality
all individuals: 11856
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.991e0

DP
type: SiteQuality
SIO_000300: 2.162957e6

MQRankSum
type: SiteQuality
SIO_000300: 3.08e-1

QD
type: SiteQuality
SIO_000300: 1.284e1

MQ
type: SiteQuality
SIO_000300: 5.986e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.42e-2

FS
type: SiteQuality
SIO_000300: 8.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.28e0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.96e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.62e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.71e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

VQSLOD
type: SiteQuality
SIO_000300: 1.75e0

MQRankSum
type: SiteQuality
SIO_000300: 3.39e-1

FS
type: SiteQuality
SIO_000300: 7.23e-1

DP
type: SiteQuality
SIO_000300: 2.162667e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.9e-2

QD
type: SiteQuality
SIO_000300: 1.315e1

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

DP
type: SiteQuality
SIO_000300: 2.162568e6

QD
type: SiteQuality
SIO_000300: 1.503e1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 9.77e0

VQSLOD
type: SiteQuality
SIO_000300: 2.04e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.04e-1

QD
type: SiteQuality
SIO_000300: 1.503e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.162568e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4507
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.872e-1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.162272e6

MQRankSum
type: SiteQuality
SIO_000300: 9.93e-1

FS
type: SiteQuality
SIO_000300: 7.51e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.25e-1

QD
type: SiteQuality
SIO_000300: 1.548e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.51e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.04e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.102e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.88e0

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.1094e1

QD
type: SiteQuality
SIO_000300: 1.411e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.79e-2

MQ
type: SiteQuality
SIO_000300: 5.94e1

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.03e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
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European (Finnish)
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Other
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ClippingRankSum
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BaseQRankSum
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MQ
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FS
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DP
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele num: 908
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East Asian
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allele count: 39
allele frequency: 4.506586549572452e-3
allele num: 8654
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European (Non-Finnish)
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allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

African
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Latino
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InbreedingCoeff
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FS
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MQ
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DP
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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MQRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
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African
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allele frequency: 9.609840476648087e-5
allele num: 10406
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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QD
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ReadPosRankSum
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SIO_000300: -8.25e-1

MQ
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FS
type: SiteQuality
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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num of homozygotes: 0

East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

DP
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SIO_000300: 2.157443e6

MQRankSum
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BaseQRankSum
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MQ
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SIO_000300: 5.971e1

InbreedingCoeff
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SIO_000300: -1.0e-4

VQSLOD
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ClippingRankSum
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FS
type: SiteQuality
SIO_000300: 4.974e0

QD
type: SiteQuality
SIO_000300: 1.301e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.908e0

ClippingRankSum
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ReadPosRankSum
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MQRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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East Asian
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South Asian
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European (Non-Finnish)
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Other
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BaseQRankSum
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InbreedingCoeff
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FS
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MQRankSum
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ClippingRankSum
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MQ
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DP
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ReadPosRankSum
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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African
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East Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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MQ
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FS
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QD
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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European (Finnish)
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African
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South Asian
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Other
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Latino
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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QD
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BaseQRankSum
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MQ
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FS
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MQRankSum
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DP
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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East Asian
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Latino
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European (Finnish)
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Other
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South Asian
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DP
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ReadPosRankSum
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FS
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QD
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.769e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.15e-1

VQSLOD
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FS
type: SiteQuality
SIO_000300: 7.832e0

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.710801393728223e-5
allele num: 11480
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.399e0

FS
type: SiteQuality
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.222e1

VQSLOD
type: SiteQuality
SIO_000300: 3.92e-1

DP
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MQ
type: SiteQuality
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ReadPosRankSum
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SIO_000300: 2.45e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
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ClippingRankSum
type: SiteQuality
SIO_000300: 7.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -7.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.999220202747286e-5
allele num: 66684
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10392
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.295e0

MQ
type: SiteQuality
SIO_000300: 5.058e1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

FS
type: SiteQuality
SIO_000300: 5.029e0

VQSLOD
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SIO_000300: 1.72e0

DP
type: SiteQuality
SIO_000300: 2.153267e6

QD
type: SiteQuality
SIO_000300: 1.032e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.93e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
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African
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allele count: 5
allele frequency: 4.816955684007707e-4
allele num: 10380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
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DP
type: SiteQuality
SIO_000300: 2.149871e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.796e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.13e-1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.9653e1

QD
type: SiteQuality
SIO_000300: 1.463e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.061e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501140867058965e-5
allele num: 66616
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
allele num: 11446
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
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South Asian
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African
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allele frequency: 0.0e0
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East Asian
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ReadPosRankSum
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InbreedingCoeff
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QD
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FS
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MQRankSum
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VQSLOD
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ClippingRankSum
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MQ
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

Latino
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allele count: 0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66614
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East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Other
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QD
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DP
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InbreedingCoeff
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MQRankSum
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FS
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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African
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Other
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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allele num: 66586
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InbreedingCoeff
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QD
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FS
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DP
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BaseQRankSum
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MQRankSum
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MQ
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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Other
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European (Non-Finnish)
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allele num: 66586
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Latino
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African
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InbreedingCoeff
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MQ
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BaseQRankSum
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DP
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QD
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FS
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MQRankSum
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4465
bin: 7.75e1
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GenotypeQuality
all individuals: 24516
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501817198810561e-5
allele num: 66586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.143099e6

VQSLOD
type: SiteQuality
SIO_000300: 3.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.983e1

MQRankSum
type: SiteQuality
SIO_000300: 3.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.09e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 5.87e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.47e0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.738203425375742e-5
allele num: 11444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.82e-1

DP
type: SiteQuality
SIO_000300: 2.141186e6

MQ
type: SiteQuality
SIO_000300: 5.973e1

QD
type: SiteQuality
SIO_000300: 1.493e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.86e0

MQRankSum
type: SiteQuality
SIO_000300: 1.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.0e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502178158329578e-5
allele num: 66570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.557e0

DP
type: SiteQuality
SIO_000300: 2.138774e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.654e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.206e0

QD
type: SiteQuality
SIO_000300: 1.36e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.935359009096187e-4
allele num: 10334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66492
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.108647450110865e-3
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.697e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.84e-1

FS
type: SiteQuality
SIO_000300: 1.272e0

DP
type: SiteQuality
SIO_000300: 2.09365e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.89e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.333e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 9

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 550
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variant carriers: 0

GenotypeQuality
all individuals: 2069
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.511685264835925e-5
allele num: 66494
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.869969040247678e-4
allele num: 10336
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.750393838613688e-4
allele num: 11426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.9e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.92e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.2e0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.129999999999999e-1

DP
type: SiteQuality
SIO_000300: 2.092707e6

QD
type: SiteQuality
SIO_000300: 1.505e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.75e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1614

GenotypeQuality
all individuals: 3852
bin: 7.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1285
bin: 8.75e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 29
allele frequency: 4.362345437588375e-4
allele num: 66478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 9.090909090909091e-4
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 9
allele frequency: 9.977827050997782e-3
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 991
allele frequency: 8.686886395511921e-2
allele num: 11408
num of homozygotes: 46

East Asian
type: Population
allele count: 619
allele frequency: 7.19934868574087e-2
allele num: 8598
num of homozygotes: 29

African
type: Population
allele count: 20
allele frequency: 1.934984520123839e-3
allele num: 10336
num of homozygotes: 0

South Asian
type: Population
allele count: 42
allele frequency: 2.546998180715585e-3
allele num: 16490
num of homozygotes: 1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.87e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.5e-2

QD
type: SiteQuality
SIO_000300: 1.695e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.090388e6

MQRankSum
type: SiteQuality
SIO_000300: 1.11e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1789
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66440
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.516990291262136e-4
allele num: 6592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.28e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.308e0

QD
type: SiteQuality
SIO_000300: 1.394e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.021006e6

MQRankSum
type: SiteQuality
SIO_000300: -5.31e-1

FS
type: SiteQuality
SIO_000300: 4.406e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

GenotypeQuality
all individuals: 235
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 4.75e1
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GenotypeQuality
all individuals: 11120
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.165229550221394e-4
allele num: 8582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.28e0

FS
type: SiteQuality
SIO_000300: 4.406e0

VQSLOD
type: SiteQuality
SIO_000300: 8.42e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.308e0

DP
type: SiteQuality
SIO_000300: 2.021006e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

QD
type: SiteQuality
SIO_000300: 1.394e1

MQRankSum
type: SiteQuality
SIO_000300: -5.31e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 11111
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510026576467746e-5
allele num: 66224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10172
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.176470588235294e-4
allele num: 8500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.963827e6

MQRankSum
type: SiteQuality
SIO_000300: -2.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.54e-1

QD
type: SiteQuality
SIO_000300: 1.433e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.629e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.58e-1

GenotypeQuality
all individuals: 3844
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1954
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GenotypeQuality
all individuals: 9391
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GenotypeQuality
all individuals: 118
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GenotypeQuality
all individuals: 304
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
all individuals: 205
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GenotypeQuality
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GenotypeQuality
all individuals: 1816
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GenotypeQuality
all individuals: 1658
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 970
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4138
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5255
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2013
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.605858170606372e-5
allele num: 62272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9688
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15942
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

FS
type: SiteQuality
SIO_000300: 1.25e0

QD
type: SiteQuality
SIO_000300: 1.306e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.60573e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.848e0

GenotypeQuality
all individuals: 4138
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18439
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1954
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3844
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3147
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1658
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2013
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 970
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 9391
bin: 9.75e1
variant carriers: 5

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15942
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7484
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 6.193228736581337e-4
allele num: 9688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.848e0

DP
type: SiteQuality
SIO_000300: 1.60573e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

FS
type: SiteQuality
SIO_000300: 1.25e0

QD
type: SiteQuality
SIO_000300: 1.306e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1