1-205312594-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312594
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312594
    reference: chr 1
allele count: 1
allele frequency: 8.402514032198434e-6
allele num: 119012
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.139G>C
  hgvsp: ENSP00000442229.1:p.Asp47His
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.139G>C
  hgvsp: ENSP00000356123.3:p.Asp47His
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.4G>C
  hgvsp: ENSP00000475902.1:p.Asp2His
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3658G>C
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.139G>C
  hgvsp: ENSP00000475334.1:p.Asp47His
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.139G>C
  hgvsp: ENSP00000356124.3:p.Asp47His
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3658G>C
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.139G>C
  hgvsp: ENSP00000475290.1:p.Asp47His
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15813
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30048
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10053
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2726
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41006
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp47His
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

1-205312596-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312596
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312596
    reference: chr 1
allele count: 1
allele frequency: 8.403361344537815e-6
allele num: 119000
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3660T>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.137T>A
  hgvsp: ENSP00000442229.1:p.Met46Lys
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.137T>A
  hgvsp: ENSP00000356124.3:p.Met46Lys
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.2T>A
  hgvsp: ENSP00000475902.1:p.Met1?
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.137T>A
  hgvsp: ENSP00000475334.1:p.Met46Lys
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.137T>A
  hgvsp: ENSP00000356123.3:p.Met46Lys
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.137T>A
  hgvsp: ENSP00000475290.1:p.Met46Lys
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3660T>A
  variant of: http://identifiers.org/hgnc/25573
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30035
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15834
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10021
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41060
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2628
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: A
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-205312597-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312597
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312596
    reference: chr 1
allele count: 1
allele frequency: 8.406186953597848e-6
allele num: 118960
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.135delC
  hgvsp: ENSP00000475334.1:p.Met46TrpfsTer?
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.135delC
  hgvsp: ENSP00000356123.3:p.Met46TrpfsTer38
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.135delC
  hgvsp: ENSP00000475290.1:p.Met46TrpfsTer?
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3662delC
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.135delC
  hgvsp: ENSP00000356124.3:p.Met46TrpfsTer38
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.135delC
  hgvsp: ENSP00000442229.1:p.Met46TrpfsTer38
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-1delC
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3662delC
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29988
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10011
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15820
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40934
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2724
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1523
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Met46TrpfsTer38
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: TG
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS

1-205312598-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312598
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312598
    reference: chr 1
allele count: 1
allele frequency: 8.4088730428348e-6
allele num: 118922
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.135C>T
  hgvsp: ENST00000491471.1:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3662C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.135C>T
  hgvsp: ENST00000367156.3:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3662C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.135C>T
  hgvsp: ENST00000539253.1:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.135C>T
  hgvsp: ENST00000607173.1:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-1C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.135C>T
  hgvsp: ENST00000367155.3:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15805
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9997
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29973
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40882
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro45Pro
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

1-205312604-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312604
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312604
    reference: chr 1
allele count: 248
allele frequency: 2.088315537741251e-3
allele num: 118756
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.129C>T
  hgvsp: ENST00000491471.1:c.129C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3668C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.129C>T
  hgvsp: ENST00000367156.3:c.129C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.129C>T
  hgvsp: ENST00000539253.1:c.129C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3668C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.129C>T
  hgvsp: ENST00000367155.3:c.129C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.129C>T
  hgvsp: ENST00000607173.1:c.129C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-7C>T
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29739
  bin: 2.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 9842
  bin: 3.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15907
  bin: 2.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 3.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2580
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9122
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly43Gly
num of homozygotes: 1
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum

http://identifiers.org/exac.variant/1-205312605-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312605
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312605
    reference: chr 1
allele count: 1
allele frequency: 8.425877555147369e-6
allele num: 118682
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.128G>T
  hgvsp: ENSP00000356124.3:p.Gly43Val
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.128G>T
  hgvsp: ENSP00000475334.1:p.Gly43Val
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.128G>T
  hgvsp: ENSP00000356123.3:p.Gly43Val
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.128G>T
  hgvsp: ENSP00000442229.1:p.Gly43Val
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3669G>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3669G>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.128G>T
  hgvsp: ENSP00000475290.1:p.Gly43Val
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-8G>T
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15953
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1805
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly43Val
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

1-205312612-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312612
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312612
    reference: chr 1
allele count: 4
allele frequency: 3.377921902445615e-5
allele num: 118416
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.121G>A
  hgvsp: ENSP00000475290.1:p.Asp41Asn
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.121G>A
  hgvsp: ENSP00000356123.3:p.Asp41Asn
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3676G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.121G>A
  hgvsp: ENSP00000475334.1:p.Asp41Asn
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.121G>A
  hgvsp: ENSP00000356124.3:p.Asp41Asn
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3676G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.121G>A
  hgvsp: ENSP00000442229.1:p.Asp41Asn
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-15G>A
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29466
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40287
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2138
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp41Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-205312632-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312632
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312632
    reference: chr 1
allele count: 2
allele frequency: 1.713678582445076e-5
allele num: 116708
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.101A>G
  hgvsp: ENSP00000356124.3:p.Tyr34Cys
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.101A>G
  hgvsp: ENSP00000442229.1:p.Tyr34Cys
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.101A>G
  hgvsp: ENSP00000475290.1:p.Tyr34Cys
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3696A>G
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.101A>G
  hgvsp: ENSP00000356123.3:p.Tyr34Cys
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.101A>G
  hgvsp: ENSP00000475334.1:p.Tyr34Cys
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-35A>G
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3696A>G
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2686
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8594
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27408
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15895
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2322
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Tyr34Cys
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum

1-205312634-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312634
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312634
    reference: chr 1
allele count: 1
allele frequency: 8.586344278060173e-6
allele num: 116464
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.99C>G
  hgvsp: ENST00000367156.3:c.99C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.99C>G
  hgvsp: ENST00000539253.1:c.99C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3698C>G
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.99C>G
  hgvsp: ENST00000491471.1:c.99C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-37C>G
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.99C>G
  hgvsp: ENST00000607173.1:c.99C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.99C>G
  hgvsp: ENST00000367155.3:c.99C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3698C>G
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27068
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8480
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2829
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15943
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2451
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2302
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8387
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val33Val
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/1-205312635-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312635
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312634
    reference: chr 1
allele count: 1
allele frequency: 8.595495960116898e-6
allele num: 116340
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.97delG
  hgvsp: ENSP00000475290.1:p.Val33SerfsTer?
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.97delG
  hgvsp: ENSP00000442229.1:p.Val33SerfsTer51
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.97delG
  hgvsp: ENSP00000475334.1:p.Val33SerfsTer?
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.97delG
  hgvsp: ENSP00000356124.3:p.Val33SerfsTer51
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-39delG
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.97delG
  hgvsp: ENSP00000356123.3:p.Val33SerfsTer51
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3700delG
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3700delG
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8430
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26904
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1883
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15957
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2900
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36947
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4076
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val33SerfsTer51
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: AC
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP

1-205312638-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312638
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312638
    reference: chr 1
allele count: 1
allele frequency: 8.634236474468563e-6
allele num: 115818
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-41A>C
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.95A>C
  hgvsp: ENSP00000356123.3:p.Gln32Pro
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.95A>C
  hgvsp: ENSP00000475334.1:p.Gln32Pro
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3702A>C
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.95A>C
  hgvsp: ENSP00000442229.1:p.Gln32Pro
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3702A>C
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.95A>C
  hgvsp: ENSP00000475290.1:p.Gln32Pro
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.95A>C
  hgvsp: ENSP00000356124.3:p.Gln32Pro
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26121
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16245
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4352
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gln32Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

1-205312645-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312645
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312645
    reference: chr 1
allele count: 2
allele frequency: 1.739886907351022e-5
allele num: 114950
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.88G>A
  hgvsp: ENSP00000442229.1:p.Gly30Arg
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.88G>A
  hgvsp: ENSP00000475334.1:p.Gly30Arg
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-48G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3709G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.88G>A
  hgvsp: ENSP00000356123.3:p.Gly30Arg
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.88G>A
  hgvsp: ENSP00000475290.1:p.Gly30Arg
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.88G>A
  hgvsp: ENSP00000356124.3:p.Gly30Arg
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3709G>A
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2691
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3442
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7578
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2088
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1006
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34869
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7794
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly30Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ

1-205312646-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312646
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312646
    reference: chr 1
allele count: 2
allele frequency: 1.739553978359949e-5
allele num: 114972
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.87C>T
  hgvsp: ENST00000367156.3:c.87C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.87C>T
  hgvsp: ENST00000491471.1:c.87C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3710C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-49C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.87C>T
  hgvsp: ENST00000539253.1:c.87C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.87C>T
  hgvsp: ENST00000607173.1:c.87C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.87C>T
  hgvsp: ENST00000367155.3:c.87C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3710C>T
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25274
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2713
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7436
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3457
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35672
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4850
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 987
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr29Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

1-205312651-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312651
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312651
    reference: chr 1
allele count: 16
allele frequency: 1.397379912663755e-4
allele num: 114500
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.82G>C
  hgvsp: ENSP00000475334.1:p.Glu28Gln
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.82G>C
  hgvsp: ENSP00000475290.1:p.Glu28Gln
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.82G>C
  hgvsp: ENSP00000356123.3:p.Glu28Gln
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3715G>C
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.82G>C
  hgvsp: ENSP00000356124.3:p.Glu28Gln
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.82G>C
  hgvsp: ENSP00000442229.1:p.Glu28Gln
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-54G>C
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3715G>C
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17378
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24801
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3686
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7204
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5193
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu28Gln
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum

http://identifiers.org/exac.variant/1-205312653-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312653
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312653
    reference: chr 1
allele count: 1
allele frequency: 8.755034144633164e-6
allele num: 114220
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.80T>G
  hgvsp: ENSP00000356123.3:p.Leu27Arg
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.80T>G
  hgvsp: ENSP00000475334.1:p.Leu27Arg
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.80T>G
  hgvsp: ENSP00000442229.1:p.Leu27Arg
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.80T>G
  hgvsp: ENSP00000475290.1:p.Leu27Arg
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.80T>G
  hgvsp: ENSP00000356124.3:p.Leu27Arg
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-56T>G
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3717T>G
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3717T>G
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17467
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24455
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7108
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5307
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu27Arg
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

1-205312654-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312654
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312654
    reference: chr 1
allele count: 1
allele frequency: 8.760709967935801e-6
allele num: 114146
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.79C>T
  hgvsp: ENST00000491471.1:c.79C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.79C>T
  hgvsp: ENST00000607173.1:c.79C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.79C>T
  hgvsp: ENST00000539253.1:c.79C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3718C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-57C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475955
  ensembl transcript: ENST00000606887
  gene symbol: KLHDC8A
  hgvsc: ENST00000606887.1:c.79C>T
  hgvsp: ENST00000606887.1:c.79C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.79C>T
  hgvsp: ENST00000367155.3:c.79C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3718C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.79C>T
  hgvsp: ENST00000367156.3:c.79C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
canonical: false
consequence: incomplete terminal codon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24442
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17549
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3071
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7103
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1988
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ter27Ter
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

1-205312658-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312658
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312658
    reference: chr 1
allele count: 1
allele frequency: 8.781481611577505e-6
allele num: 113876
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.75C>T
  hgvsp: ENST00000367155.3:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-61C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.75C>T
  hgvsp: ENST00000607173.1:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475955
  ensembl transcript: ENST00000606887
  gene symbol: KLHDC8A
  hgvsc: ENST00000606887.1:c.75C>T
  hgvsp: ENST00000606887.1:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3722C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.75C>T
  hgvsp: ENST00000539253.1:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.75C>T
  hgvsp: ENST00000491471.1:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.75C>T
  hgvsp: ENST00000367156.3:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3722C>T
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3950
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6913
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24222
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1050
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2073
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5575
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser25Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

1-205312664-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312664
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312664
    reference: chr 1
allele count: 1
allele frequency: 8.84564352056612e-6
allele num: 113050
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.69C>T
  hgvsp: ENST00000539253.1:c.69C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.69C>T
  hgvsp: ENST00000491471.1:c.69C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475955
  ensembl transcript: ENST00000606887
  gene symbol: KLHDC8A
  hgvsc: ENST00000606887.1:c.69C>T
  hgvsp: ENST00000606887.1:c.69C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3728C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3728C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-67C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.69C>T
  hgvsp: ENST00000367156.3:c.69C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.69C>T
  hgvsp: ENST00000367155.3:c.69C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.69C>T
  hgvsp: ENST00000607173.1:c.69C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 23592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17666
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4330
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3501
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6735
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1907
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Tyr23Tyr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum

1-205312665-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312665
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312665
    reference: chr 1
allele count: 1
allele frequency: 8.864462370357237e-6
allele num: 112810
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.68A>T
  hgvsp: ENSP00000356124.3:p.Tyr23Phe
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.68A>T
  hgvsp: ENSP00000442229.1:p.Tyr23Phe
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3729A>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475955
  ensembl transcript: ENST00000606887
  gene symbol: KLHDC8A
  hgvsc: ENST00000606887.1:c.68A>T
  hgvsp: ENSP00000475955.1:p.Tyr23Phe
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3729A>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.68A>T
  hgvsp: ENSP00000356123.3:p.Tyr23Phe
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-68A>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.68A>T
  hgvsp: ENSP00000475290.1:p.Tyr23Phe
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.68A>T
  hgvsp: ENSP00000475334.1:p.Tyr23Phe
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4376
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6710
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23417
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17703
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2018
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Tyr23Phe
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

1-205312665-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312665
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312665
    reference: chr 1
allele count: 3
allele frequency: 2.659338711107171e-5
allele num: 112810
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.68A>G
  hgvsp: ENSP00000356123.3:p.Tyr23Cys
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.68A>G
  hgvsp: ENSP00000475290.1:p.Tyr23Cys
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.68A>G
  hgvsp: ENSP00000356124.3:p.Tyr23Cys
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475955
  ensembl transcript: ENST00000606887
  gene symbol: KLHDC8A
  hgvsc: ENST00000606887.1:c.68A>G
  hgvsp: ENSP00000475955.1:p.Tyr23Cys
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.68A>G
  hgvsp: ENSP00000442229.1:p.Tyr23Cys
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3729A>G
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3729A>G
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-68A>G
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.68A>G
  hgvsp: ENSP00000475334.1:p.Tyr23Cys
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23417
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17703
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4376
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6710
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1147
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr23Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

1-205312670-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312670
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312670
    reference: chr 1
allele count: 3
allele frequency: 2.677662935789643e-5
allele num: 112038
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.63G>A
  hgvsp: ENST00000491471.1:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3734G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-73G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.63G>A
  hgvsp: ENST00000539253.1:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.63G>A
  hgvsp: ENST00000367155.3:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.63G>A
  hgvsp: ENST00000367156.3:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3734G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475955
  ensembl transcript: ENST00000606887
  gene symbol: KLHDC8A
  hgvsc: ENST00000606887.1:c.63G>A
  hgvsp: ENST00000606887.1:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.63G>A
  hgvsp: ENST00000607173.1:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22900
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2591
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6592
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4599
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3870
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7033
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34249
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg21Arg
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

1-205312685-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312685
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312685
    reference: chr 1
allele count: 1
allele frequency: 9.109625230018038e-6
allele num: 109774
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.48A>G
  hgvsp: ENST00000491471.1:c.48A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3749A>G
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.48A>G
  hgvsp: ENST00000367156.3:c.48A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-88A>G
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.48A>G
  hgvsp: ENST00000607173.1:c.48A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.48A>G
  hgvsp: ENST00000539253.1:c.48A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.48A>G
  hgvsp: ENST00000367155.3:c.48A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475955
  ensembl transcript: ENST00000606887
  gene symbol: KLHDC8A
  hgvsc: ENST00000606887.1:c.48A>G
  hgvsp: ENST00000606887.1:c.48A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3749A>G
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18010
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4841
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21309
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5416
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33571
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro16Pro
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum

1-205312690-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312690
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312690
    reference: chr 1
allele count: 1
allele frequency: 9.205051732390736e-6
allele num: 108636
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.43G>A
  hgvsp: ENSP00000475290.1:p.Ala15Thr
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3754G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.43G>A
  hgvsp: ENSP00000475334.1:p.Ala15Thr
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.43G>A
  hgvsp: ENSP00000356124.3:p.Ala15Thr
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.43G>A
  hgvsp: ENSP00000356123.3:p.Ala15Thr
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.43G>A
  hgvsp: ENSP00000442229.1:p.Ala15Thr
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-93G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3754G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475955
  ensembl transcript: ENST00000606887
  gene symbol: KLHDC8A
  hgvsc: ENST00000606887.1:c.43G>A
  hgvsp: ENSP00000475955.1:p.Ala15Thr
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20622
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6024
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5669
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 971
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6205
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala15Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/1-205312691-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312691
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312691
    reference: chr 1
allele count: 1
allele frequency: 9.20352679146649e-6
allele num: 108654
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.42G>T
  hgvsp: ENST00000367155.3:c.42G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-94G>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.42G>T
  hgvsp: ENST00000539253.1:c.42G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475955
  ensembl transcript: ENST00000606887
  gene symbol: KLHDC8A
  hgvsc: ENST00000606887.1:c.42G>T
  hgvsp: ENST00000606887.1:c.42G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.42G>T
  hgvsp: ENST00000607173.1:c.42G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3755G>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.42G>T
  hgvsp: ENST00000491471.1:c.42G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.42G>T
  hgvsp: ENST00000367156.3:c.42G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3755G>T
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6020
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5304
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20598
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5626
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17803
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1503
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1330
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1700
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Leu14Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

1-205312710-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312710
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312710
    reference: chr 1
allele count: 24
allele frequency: 2.28227999771772e-4
allele num: 105158
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.23A>G
  hgvsp: ENSP00000475334.1:p.Asp8Gly
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.23A>G
  hgvsp: ENSP00000475290.1:p.Asp8Gly
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.23A>G
  hgvsp: ENSP00000356124.3:p.Asp8Gly
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-113A>G
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475955
  ensembl transcript: ENST00000606887
  gene symbol: KLHDC8A
  hgvsc: ENST00000606887.1:c.23A>G
  hgvsp: ENSP00000475955.1:p.Asp8Gly
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.23A>G
  hgvsp: ENSP00000356123.3:p.Asp8Gly
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3774A>G
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3774A>G
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.23A>G
  hgvsp: ENSP00000442229.1:p.Asp8Gly
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6669
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 16054
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5168
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8554
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19118
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5707
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp8Gly
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

1-205312714-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312714
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312714
    reference: chr 1
allele count: 47
allele frequency: 4.514108991720932e-4
allele num: 104118
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.19A>G
  hgvsp: ENSP00000356124.3:p.Lys7Glu
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.19A>G
  hgvsp: ENSP00000475290.1:p.Lys7Glu
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.19A>G
  hgvsp: ENSP00000356123.3:p.Lys7Glu
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-117A>G
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.19A>G
  hgvsp: ENSP00000475334.1:p.Lys7Glu
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.19A>G
  hgvsp: ENSP00000442229.1:p.Lys7Glu
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475955
  ensembl transcript: ENST00000606887
  gene symbol: KLHDC8A
  hgvsc: ENST00000606887.1:c.19A>G
  hgvsp: ENSP00000475955.1:p.Lys7Glu
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3778A>G
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3778A>G
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18719
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 7015
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9268
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5084
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 15195
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29288
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12460
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 9.75e1
  variant carriers: 45
hgvs: p.Lys7Glu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-205312726-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312726
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312726
    reference: chr 1
allele count: 1
allele frequency: 9.995402115027087e-6
allele num: 100046
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3790G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.7G>A
  hgvsp: ENSP00000356124.3:p.Val3Met
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475955
  ensembl transcript: ENST00000606887
  gene symbol: KLHDC8A
  hgvsc: ENST00000606887.1:c.7G>A
  hgvsp: ENSP00000475955.1:p.Val3Met
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-129G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.7G>A
  hgvsp: ENSP00000356123.3:p.Val3Met
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.7G>A
  hgvsp: ENSP00000475290.1:p.Val3Met
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3790G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.7G>A
  hgvsp: ENSP00000442229.1:p.Val3Met
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.7G>A
  hgvsp: ENSP00000475334.1:p.Val3Met
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12176
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8068
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16377
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5001
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14955
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1384
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val3Met
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum

1-205312740-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312740
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312740
    reference: chr 1
allele count: 1
allele frequency: 1.067874076288924e-5
allele num: 93644
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3804A>G
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.-8A>G
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.-8A>G
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475955
  ensembl transcript: ENST00000606887
  gene symbol: KLHDC8A
  hgvsc: ENST00000606887.1:c.-8A>G
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-129-14A>G
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.-8A>G
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.-8A>G
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.-8A>G
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3804A>G
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9277
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3616
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15496
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11910
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5930
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8754
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1011
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4090
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16553
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3730
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

1-205312747-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312747
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312747
    reference: chr 1
allele count: 1
allele frequency: 1.12989243424026e-5
allele num: 88504
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475955
  ensembl transcript: ENST00000606887
  gene symbol: KLHDC8A
  hgvsc: ENST00000606887.1:c.-15C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-129-21C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.-15C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.-15C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.-15C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.-15C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.-15C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3811C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3811C>T
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4500
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15565
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8370
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2678
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3942
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1467
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 917
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4816
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1556
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/1-205312748-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312748
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312748
    reference: chr 1
allele count: 4
allele frequency: 4.536381781890764e-5
allele num: 88176
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.-16G>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.-16G>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3812G>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-129-22G>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.-16G>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3812G>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.-16G>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475955
  ensembl transcript: ENST00000606887
  gene symbol: KLHDC8A
  hgvsc: ENST00000606887.1:c.-16G>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.-16G>T
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 9147
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15545
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8293
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7460
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4522
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1467
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4860
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11774
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP

1-205312748-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312748
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312748
    reference: chr 1
allele count: 2
allele frequency: 2.268190890945382e-5
allele num: 88176
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.-16G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.-16G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475955
  ensembl transcript: ENST00000606887
  gene symbol: KLHDC8A
  hgvsc: ENST00000606887.1:c.-16G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.-16G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3812G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.-16G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.-16G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3812G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-129-22G>A
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15545
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7460
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8293
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4522
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5335
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1467
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3905
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4860
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

1-205312760-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312760
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312760
    reference: chr 1
allele count: 1
allele frequency: 1.183011948420679e-5
allele num: 84530
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3824C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475955
  ensembl transcript: ENST00000606887
  gene symbol: KLHDC8A
  hgvsc: ENST00000606887.1:c.-28C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.-28C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.-28C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.-28C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.-28C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-129-34C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.-28C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3824C>T
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 9667
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15421
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5096
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6248
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7931
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11224
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4520
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1739
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

1-205312767-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312767
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312767
    reference: chr 1
allele count: 32719
allele frequency: 3.996555430693311e-1
allele num: 81868
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-129-41C>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3831C>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.-35C>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475955
  ensembl transcript: ENST00000606887
  gene symbol: KLHDC8A
  hgvsc: ENST00000606887.1:c.-35C>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.-35C>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3831C>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.-35C>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.-35C>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.-35C>A
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 2.5e0
  variant carriers: 574
genotype depth: GenotypeDepth
  all individuals: 11305
  bin: 1.75e1
  variant carriers: 7473
genotype depth: GenotypeDepth
  all individuals: 15012
  bin: 1.25e1
  variant carriers: 6848
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 3.25e1
  variant carriers: 1882
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 3.75e1
  variant carriers: 761
genotype depth: GenotypeDepth
  all individuals: 5242
  bin: 2.75e1
  variant carriers: 3613
genotype depth: GenotypeDepth
  all individuals: 7264
  bin: 2.25e1
  variant carriers: 5924
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 11454
  bin: 7.5e0
  variant carriers: 4330
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.25e1
  variant carriers: 296
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3184
  bin: 3.25e1
  variant carriers: 613
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 8.25e1
  variant carriers: 748
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 7.25e1
  variant carriers: 555
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 4.25e1
  variant carriers: 443
genotype quality: GenotypeQuality
  all individuals: 4090
  bin: 7.5e0
  variant carriers: 344
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 5.75e1
  variant carriers: 698
num of homozygotes: 6068
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/1-205312770-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312770
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312770
    reference: chr 1
allele count: 26
allele frequency: 3.406262282195729e-4
allele num: 76330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3834G>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475955
  ensembl transcript: ENST00000606887
  gene symbol: KLHDC8A
  hgvsc: ENST00000606887.1:c.-38G>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.-38G>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.-38G>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.-38G>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.-38G>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.-38G>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3834G>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-129-44G>T
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6989
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13284
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3674
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18485
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 10447
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4997
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7250
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7117
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 9.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 6.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

1-205312774-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312774
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312774
    reference: chr 1
allele count: 1
allele frequency: 1.355674854942791e-5
allele num: 73764
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3838G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.-42G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-129-48G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.-42G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475955
  ensembl transcript: ENST00000606887
  gene symbol: KLHDC8A
  hgvsc: ENST00000606887.1:c.-42G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3838G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.-42G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.-42G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.-42G>A
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3979
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14375
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11481
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17530
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2078
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3289
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5447
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7314
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/1-205312776-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312776
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312776
    reference: chr 1
allele count: 1
allele frequency: 1.375856470652981e-5
allele num: 72682
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3840G>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.-44G>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475955
  ensembl transcript: ENST00000606887
  gene symbol: KLHDC8A
  hgvsc: ENST00000606887.1:c.-44G>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.-44G>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.-44G>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3840G>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.-44G>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-130+50G>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.-44G>T
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14829
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11350
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1161
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2573
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3704
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7330
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7313
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

1-205312776-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312776
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312776
    reference: chr 1
allele count: 3
allele frequency: 4.127569411958944e-5
allele num: 72682
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.-44G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-130+50G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.-44G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.-44G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3840G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.-44G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475955
  ensembl transcript: ENST00000606887
  gene symbol: KLHDC8A
  hgvsc: ENST00000606887.1:c.-44G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3840G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.-44G>A
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11350
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17197
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14829
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3772
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2573
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5483
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3704
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

1-205312778-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312778
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312778
    reference: chr 1
allele count: 2
allele frequency: 2.815949538184276e-5
allele num: 71024
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3842C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.-46C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-130+48C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.-46C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.-46C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475955
  ensembl transcript: ENST00000606887
  gene symbol: KLHDC8A
  hgvsc: ENST00000606887.1:c.-46C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3842C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.-46C>T
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.-46C>T
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15498
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5038
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16614
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7214
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11249
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7129
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3358
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1575
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4863
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

1-205312779-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312779
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312779
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 71268
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.-47C>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-130+47C>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.-47C>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3843C>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475955
  ensembl transcript: ENST00000606887
  gene symbol: KLHDC8A
  hgvsc: ENST00000606887.1:c.-47C>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.-47C>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.-47C>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.-47C>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3843C>A
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 5060
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16631
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15519
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7308
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2261
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2757
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3342
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1528
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

1-205312780-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312780
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312780
    reference: chr 1
allele count: 1
allele frequency: 1.404218271688151e-5
allele num: 71214
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475955
  ensembl transcript: ENST00000606887
  gene symbol: KLHDC8A
  hgvsc: ENST00000606887.1:c.-48C>G
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-130+46C>G
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.-48C>G
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.-48C>G
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.-48C>G
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3844C>G
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.-48C>G
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.-48C>G
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3844C>G
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15527
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7258
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11170
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5071
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16660
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1311
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3348
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1504
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD

1-205312783-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205312783
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205312783
    reference: chr 1
allele count: 1
allele frequency: 1.443043089266645e-5
allele num: 69298
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.-51G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000442229
  ensembl transcript: ENST00000539253
  gene symbol: KLHDC8A
  hgvsc: ENST00000539253.1:c.-51G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475955
  ensembl transcript: ENST00000606887
  gene symbol: KLHDC8A
  hgvsc: ENST00000606887.1:c.-51G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-26-3847G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.38-3847G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475902
  ensembl transcript: ENST00000607826
  gene symbol: KLHDC8A
  hgvsc: ENST00000607826.1:c.-130+43G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.-51G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.-51G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.-51G>A
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16450
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15780
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7293
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5303
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6798
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3143
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11010
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1580
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff

1-205325627-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205325627
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205325627
    reference: chr 1
allele count: 1
allele frequency: 9.45179584120983e-5
allele num: 10580
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl transcript: ENST00000606111
  gene symbol: KLHDC8A
  hgvsc: ENST00000606111.1:n.88+34A>C
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.-730+34A>C
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl transcript: ENST00000607193
  gene symbol: KLHDC8A
  hgvsc: ENST00000607193.1:n.304+34A>C
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475955
  ensembl transcript: ENST00000606887
  gene symbol: KLHDC8A
  hgvsc: ENST00000606887.1:c.-405+34A>C
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-242+34A>C
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.-405+34A>C
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.37+34A>C
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl transcript: ENST00000606529
  gene symbol: KLHDC8A
  hgvsc: ENST00000606529.1:n.304+34A>C
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.-190+34A>C
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.-190+34A>C
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4827
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

1-205325647-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205325647
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205325647
    reference: chr 1
allele count: 1
allele frequency: 9.402030838661151e-5
allele num: 10636
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.37+14C>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl transcript: ENST00000606529
  gene symbol: KLHDC8A
  hgvsc: ENST00000606529.1:n.304+14C>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-242+14C>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.-730+14C>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.-190+14C>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl transcript: ENST00000607193
  gene symbol: KLHDC8A
  hgvsc: ENST00000607193.1:n.304+14C>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl transcript: ENST00000606111
  gene symbol: KLHDC8A
  hgvsc: ENST00000606111.1:n.88+14C>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475955
  ensembl transcript: ENST00000606887
  gene symbol: KLHDC8A
  hgvsc: ENST00000606887.1:c.-405+14C>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.-405+14C>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.-190+14C>A
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4732
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

1-205325652-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205325652
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205325652
    reference: chr 1
allele count: 1
allele frequency: 9.384384384384384e-5
allele num: 10656
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.-730+9T>C
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.37+9T>C
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl transcript: ENST00000606529
  gene symbol: KLHDC8A
  hgvsc: ENST00000606529.1:n.304+9T>C
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475955
  ensembl transcript: ENST00000606887
  gene symbol: KLHDC8A
  hgvsc: ENST00000606887.1:c.-405+9T>C
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475871
  ensembl transcript: ENST00000460687
  gene symbol: KLHDC8A
  hgvsc: ENST00000460687.1:c.-242+9T>C
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.-190+9T>C
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl transcript: ENST00000607193
  gene symbol: KLHDC8A
  hgvsc: ENST00000607193.1:n.304+9T>C
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl transcript: ENST00000606111
  gene symbol: KLHDC8A
  hgvsc: ENST00000606111.1:n.88+9T>C
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.-190+9T>C
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.-405+9T>C
  variant of: http://identifiers.org/hgnc/25573
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4787
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2273
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

1-205325711-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205325711
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205325710
    reference: chr 1
allele count: 1
allele frequency: 9.328358208955224e-5
allele num: 10720
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl transcript: ENST00000606111
  gene symbol: KLHDC8A
  hgvsc: ENST00000606111.1:n.52-15delC
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.-456delC
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.-241delC
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.-766-15delC
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.-226-15delC
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.-15delC
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162873
  ensembl transcript: ENST00000607193
  gene symbol: KLHDC8A
  hgvsc: ENST00000607193.1:n.253delC
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475955
  ensembl transcript: ENST00000606887
  gene symbol: KLHDC8A
  hgvsc: ENST00000606887.1:c.-441-15delC
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162873
  ensembl transcript: ENST00000606529
  gene symbol: KLHDC8A
  hgvsc: ENST00000606529.1:n.253delC
  variant of: http://identifiers.org/hgnc/25573
canonical: false
consequence: 5' UTR
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9369
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8281
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: AG
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

1-205325725-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205325725
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205325725
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 10704
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl transcript: ENST00000606111
  gene symbol: KLHDC8A
  hgvsc: ENST00000606111.1:n.52-28G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162873
  ensembl transcript: ENST00000606529
  gene symbol: KLHDC8A
  hgvsc: ENST00000606529.1:n.240G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356123
  ensembl transcript: ENST00000367155
  gene symbol: KLHDC8A
  hgvsc: ENST00000367155.3:c.-254G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162873
  ensembl transcript: ENST00000607193
  gene symbol: KLHDC8A
  hgvsc: ENST00000607193.1:n.240G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475955
  ensembl transcript: ENST00000606887
  gene symbol: KLHDC8A
  hgvsc: ENST00000606887.1:c.-441-28G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475290
  ensembl transcript: ENST00000607173
  gene symbol: KLHDC8A
  hgvsc: ENST00000607173.1:c.-226-28G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000443447
  ensembl transcript: ENST00000537168
  gene symbol: KLHDC8A
  hgvsc: ENST00000537168.1:c.-28G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000475334
  ensembl transcript: ENST00000491471
  gene symbol: KLHDC8A
  hgvsc: ENST00000491471.1:c.-469G>A
  variant of: http://identifiers.org/hgnc/25573
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162873
  ensembl protein: ENSP00000356124
  ensembl transcript: ENST00000367156
  gene symbol: KLHDC8A
  hgvsc: ENST00000367156.3:c.-766-28G>A
  variant of: http://identifiers.org/hgnc/25573
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1963
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum

1-205350748-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205350748
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205350748
    reference: chr 1
allele count: 1
allele frequency: 8.243887157672586e-6
allele num: 121302
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000476884
  gene symbol: LEMD1
  hgvsc: ENST00000476884.1:n.475C>T
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356122
  ensembl transcript: ENST00000367154
  gene symbol: LEMD1
  hgvsc: ENST00000367154.1:c.*115C>T
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356121
  ensembl transcript: ENST00000367153
  gene symbol: LEMD1
  hgvsc: ENST00000367153.4:c.*38C>T
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356117
  ensembl transcript: ENST00000367149
  gene symbol: LEMD1
  hgvsc: ENST00000367149.3:c.*115C>T
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000226235
  ensembl transcript: ENST00000447832
  gene symbol: LEMD1-AS1
  hgvsc: ENST00000447832.1:n.456-407G>A
  variant of: http://identifiers.org/hgnc/44132
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356120
  ensembl transcript: ENST00000367152
  gene symbol: LEMD1
  hgvsc: ENST00000367152.1:c.*38C>T
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356119
  ensembl transcript: ENST00000367151
  gene symbol: LEMD1
  hgvsc: ENST00000367151.2:c.*38C>T
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000375801
  ensembl transcript: ENST00000391936
  gene symbol: LEMD1
  hgvsc: ENST00000391936.2:c.*115C>T
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000495594
  gene symbol: LEMD1
  hgvsc: ENST00000495594.1:n.395C>T
  variant of: http://identifiers.org/hgnc/18725
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3699
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3921
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5719
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6085
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4873
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6519
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

1-205350755-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205350755
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205350755
    reference: chr 1
allele count: 1
allele frequency: 8.242392271933006e-6
allele num: 121324
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356121
  ensembl transcript: ENST00000367153
  gene symbol: LEMD1
  hgvsc: ENST00000367153.4:c.*31G>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000476884
  gene symbol: LEMD1
  hgvsc: ENST00000476884.1:n.468G>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356117
  ensembl transcript: ENST00000367149
  gene symbol: LEMD1
  hgvsc: ENST00000367149.3:c.*108G>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356120
  ensembl transcript: ENST00000367152
  gene symbol: LEMD1
  hgvsc: ENST00000367152.1:c.*31G>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000226235
  ensembl transcript: ENST00000447832
  gene symbol: LEMD1-AS1
  hgvsc: ENST00000447832.1:n.456-400C>G
  variant of: http://identifiers.org/hgnc/44132
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356119
  ensembl transcript: ENST00000367151
  gene symbol: LEMD1
  hgvsc: ENST00000367151.2:c.*31G>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356122
  ensembl transcript: ENST00000367154
  gene symbol: LEMD1
  hgvsc: ENST00000367154.1:c.*108G>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000495594
  gene symbol: LEMD1
  hgvsc: ENST00000495594.1:n.388G>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000375801
  ensembl transcript: ENST00000391936
  gene symbol: LEMD1
  hgvsc: ENST00000391936.2:c.*108G>C
  variant of: http://identifiers.org/hgnc/18725
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6520
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3698
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6085
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

1-205350755-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205350755
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205350755
    reference: chr 1
allele count: 9
allele frequency: 7.418153044739705e-5
allele num: 121324
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356117
  ensembl transcript: ENST00000367149
  gene symbol: LEMD1
  hgvsc: ENST00000367149.3:c.*108G>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000495594
  gene symbol: LEMD1
  hgvsc: ENST00000495594.1:n.388G>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356121
  ensembl transcript: ENST00000367153
  gene symbol: LEMD1
  hgvsc: ENST00000367153.4:c.*31G>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356120
  ensembl transcript: ENST00000367152
  gene symbol: LEMD1
  hgvsc: ENST00000367152.1:c.*31G>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356119
  ensembl transcript: ENST00000367151
  gene symbol: LEMD1
  hgvsc: ENST00000367151.2:c.*31G>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000375801
  ensembl transcript: ENST00000391936
  gene symbol: LEMD1
  hgvsc: ENST00000391936.2:c.*108G>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000226235
  ensembl transcript: ENST00000447832
  gene symbol: LEMD1-AS1
  hgvsc: ENST00000447832.1:n.456-400C>T
  variant of: http://identifiers.org/hgnc/44132
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000476884
  gene symbol: LEMD1
  hgvsc: ENST00000476884.1:n.468G>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356122
  ensembl transcript: ENST00000367154
  gene symbol: LEMD1
  hgvsc: ENST00000367154.1:c.*108G>A
  variant of: http://identifiers.org/hgnc/18725
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6085
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3698
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6520
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1772
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2133
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

1-205350756-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205350756
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205350756
    reference: chr 1
allele count: 4
allele frequency: 3.296793867963405e-5
allele num: 121330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356117
  ensembl transcript: ENST00000367149
  gene symbol: LEMD1
  hgvsc: ENST00000367149.3:c.*107C>T
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356121
  ensembl transcript: ENST00000367153
  gene symbol: LEMD1
  hgvsc: ENST00000367153.4:c.*30C>T
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356120
  ensembl transcript: ENST00000367152
  gene symbol: LEMD1
  hgvsc: ENST00000367152.1:c.*30C>T
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000375801
  ensembl transcript: ENST00000391936
  gene symbol: LEMD1
  hgvsc: ENST00000391936.2:c.*107C>T
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000226235
  ensembl transcript: ENST00000447832
  gene symbol: LEMD1-AS1
  hgvsc: ENST00000447832.1:n.456-399G>A
  variant of: http://identifiers.org/hgnc/44132
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000476884
  gene symbol: LEMD1
  hgvsc: ENST00000476884.1:n.467C>T
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000495594
  gene symbol: LEMD1
  hgvsc: ENST00000495594.1:n.387C>T
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356119
  ensembl transcript: ENST00000367151
  gene symbol: LEMD1
  hgvsc: ENST00000367151.2:c.*30C>T
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356122
  ensembl transcript: ENST00000367154
  gene symbol: LEMD1
  hgvsc: ENST00000367154.1:c.*107C>T
  variant of: http://identifiers.org/hgnc/18725
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5713
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6398
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4876
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6515
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6084
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2136
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum

1-205350756-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205350756
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205350756
    reference: chr 1
allele count: 90
allele frequency: 7.417786202917662e-4
allele num: 121330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356120
  ensembl transcript: ENST00000367152
  gene symbol: LEMD1
  hgvsc: ENST00000367152.1:c.*30C>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000495594
  gene symbol: LEMD1
  hgvsc: ENST00000495594.1:n.387C>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356122
  ensembl transcript: ENST00000367154
  gene symbol: LEMD1
  hgvsc: ENST00000367154.1:c.*107C>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000476884
  gene symbol: LEMD1
  hgvsc: ENST00000476884.1:n.467C>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356117
  ensembl transcript: ENST00000367149
  gene symbol: LEMD1
  hgvsc: ENST00000367149.3:c.*107C>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356121
  ensembl transcript: ENST00000367153
  gene symbol: LEMD1
  hgvsc: ENST00000367153.4:c.*30C>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000226235
  ensembl transcript: ENST00000447832
  gene symbol: LEMD1-AS1
  hgvsc: ENST00000447832.1:n.456-399G>T
  variant of: http://identifiers.org/hgnc/44132
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356119
  ensembl transcript: ENST00000367151
  gene symbol: LEMD1
  hgvsc: ENST00000367151.2:c.*30C>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000375801
  ensembl transcript: ENST00000391936
  gene symbol: LEMD1
  hgvsc: ENST00000391936.2:c.*107C>A
  variant of: http://identifiers.org/hgnc/18725
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6084
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4876
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6515
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6398
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 9.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 5713
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP

1-205350759-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205350759
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205350759
    reference: chr 1
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000495594
  gene symbol: LEMD1
  hgvsc: ENST00000495594.1:n.384A>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000226235
  ensembl transcript: ENST00000447832
  gene symbol: LEMD1-AS1
  hgvsc: ENST00000447832.1:n.456-396T>G
  variant of: http://identifiers.org/hgnc/44132
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356122
  ensembl transcript: ENST00000367154
  gene symbol: LEMD1
  hgvsc: ENST00000367154.1:c.*104A>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000476884
  gene symbol: LEMD1
  hgvsc: ENST00000476884.1:n.464A>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000375801
  ensembl transcript: ENST00000391936
  gene symbol: LEMD1
  hgvsc: ENST00000391936.2:c.*104A>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356119
  ensembl transcript: ENST00000367151
  gene symbol: LEMD1
  hgvsc: ENST00000367151.2:c.*27A>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356120
  ensembl transcript: ENST00000367152
  gene symbol: LEMD1
  hgvsc: ENST00000367152.1:c.*27A>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356117
  ensembl transcript: ENST00000367149
  gene symbol: LEMD1
  hgvsc: ENST00000367149.3:c.*104A>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356121
  ensembl transcript: ENST00000367153
  gene symbol: LEMD1
  hgvsc: ENST00000367153.4:c.*27A>C
  variant of: http://identifiers.org/hgnc/18725
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6521
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4684
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3939
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3027
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5725
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3229
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1076
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD

1-205350761-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205350761
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205350761
    reference: chr 1
allele count: 7
allele frequency: 5.767772980455489e-5
allele num: 121364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000476884
  gene symbol: LEMD1
  hgvsc: ENST00000476884.1:n.462C>T
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356121
  ensembl transcript: ENST00000367153
  gene symbol: LEMD1
  hgvsc: ENST00000367153.4:c.*25C>T
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356120
  ensembl transcript: ENST00000367152
  gene symbol: LEMD1
  hgvsc: ENST00000367152.1:c.*25C>T
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000375801
  ensembl transcript: ENST00000391936
  gene symbol: LEMD1
  hgvsc: ENST00000391936.2:c.*102C>T
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356119
  ensembl transcript: ENST00000367151
  gene symbol: LEMD1
  hgvsc: ENST00000367151.2:c.*25C>T
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356122
  ensembl transcript: ENST00000367154
  gene symbol: LEMD1
  hgvsc: ENST00000367154.1:c.*102C>T
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356117
  ensembl transcript: ENST00000367149
  gene symbol: LEMD1
  hgvsc: ENST00000367149.3:c.*102C>T
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000226235
  ensembl transcript: ENST00000447832
  gene symbol: LEMD1-AS1
  hgvsc: ENST00000447832.1:n.456-394G>A
  variant of: http://identifiers.org/hgnc/44132
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000495594
  gene symbol: LEMD1
  hgvsc: ENST00000495594.1:n.382C>T
  variant of: http://identifiers.org/hgnc/18725
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4882
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5724
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6522
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4684
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6095
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2282
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

1-205350761-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205350761
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205350761
    reference: chr 1
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356122
  ensembl transcript: ENST00000367154
  gene symbol: LEMD1
  hgvsc: ENST00000367154.1:c.*102C>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000375801
  ensembl transcript: ENST00000391936
  gene symbol: LEMD1
  hgvsc: ENST00000391936.2:c.*102C>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000495594
  gene symbol: LEMD1
  hgvsc: ENST00000495594.1:n.382C>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356117
  ensembl transcript: ENST00000367149
  gene symbol: LEMD1
  hgvsc: ENST00000367149.3:c.*102C>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000226235
  ensembl transcript: ENST00000447832
  gene symbol: LEMD1-AS1
  hgvsc: ENST00000447832.1:n.456-394G>T
  variant of: http://identifiers.org/hgnc/44132
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356119
  ensembl transcript: ENST00000367151
  gene symbol: LEMD1
  hgvsc: ENST00000367151.2:c.*25C>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356120
  ensembl transcript: ENST00000367152
  gene symbol: LEMD1
  hgvsc: ENST00000367152.1:c.*25C>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000476884
  gene symbol: LEMD1
  hgvsc: ENST00000476884.1:n.462C>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356121
  ensembl transcript: ENST00000367153
  gene symbol: LEMD1
  hgvsc: ENST00000367153.4:c.*25C>A
  variant of: http://identifiers.org/hgnc/18725
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5724
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6522
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4684
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2282
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4882
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6095
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3237
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1879
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47310
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

1-205350770-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205350770
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205350770
    reference: chr 1
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000375801
  ensembl transcript: ENST00000391936
  gene symbol: LEMD1
  hgvsc: ENST00000391936.2:c.*93A>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356119
  ensembl transcript: ENST00000367151
  gene symbol: LEMD1
  hgvsc: ENST00000367151.2:c.*16A>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356120
  ensembl transcript: ENST00000367152
  gene symbol: LEMD1
  hgvsc: ENST00000367152.1:c.*16A>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356117
  ensembl transcript: ENST00000367149
  gene symbol: LEMD1
  hgvsc: ENST00000367149.3:c.*93A>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356121
  ensembl transcript: ENST00000367153
  gene symbol: LEMD1
  hgvsc: ENST00000367153.4:c.*16A>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356122
  ensembl transcript: ENST00000367154
  gene symbol: LEMD1
  hgvsc: ENST00000367154.1:c.*93A>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000476884
  gene symbol: LEMD1
  hgvsc: ENST00000476884.1:n.453A>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000495594
  gene symbol: LEMD1
  hgvsc: ENST00000495594.1:n.373A>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000226235
  ensembl transcript: ENST00000447832
  gene symbol: LEMD1-AS1
  hgvsc: ENST00000447832.1:n.456-385T>G
  variant of: http://identifiers.org/hgnc/44132
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4687
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4884
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3067
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6523
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3586
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6094
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5722
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1228
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1795
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

1-205350779-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205350779
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205350779
    reference: chr 1
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000226235
  ensembl transcript: ENST00000447832
  gene symbol: LEMD1-AS1
  hgvsc: ENST00000447832.1:n.456-376A>G
  variant of: http://identifiers.org/hgnc/44132
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000476884
  gene symbol: LEMD1
  hgvsc: ENST00000476884.1:n.444T>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356120
  ensembl transcript: ENST00000367152
  gene symbol: LEMD1
  hgvsc: ENST00000367152.1:c.*7T>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000375801
  ensembl transcript: ENST00000391936
  gene symbol: LEMD1
  hgvsc: ENST00000391936.2:c.*84T>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356122
  ensembl transcript: ENST00000367154
  gene symbol: LEMD1
  hgvsc: ENST00000367154.1:c.*84T>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000495594
  gene symbol: LEMD1
  hgvsc: ENST00000495594.1:n.364T>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356119
  ensembl transcript: ENST00000367151
  gene symbol: LEMD1
  hgvsc: ENST00000367151.2:c.*7T>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356117
  ensembl transcript: ENST00000367149
  gene symbol: LEMD1
  hgvsc: ENST00000367149.3:c.*84T>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356121
  ensembl transcript: ENST00000367153
  gene symbol: LEMD1
  hgvsc: ENST00000367153.4:c.*7T>C
  variant of: http://identifiers.org/hgnc/18725
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4687
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6094
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6523
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5722
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4884
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3943
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2150
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

1-205350787-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205350787
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205350787
    reference: chr 1
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000375801
  ensembl transcript: ENST00000391936
  gene symbol: LEMD1
  hgvsc: ENST00000391936.2:c.*76A>G
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356117
  ensembl transcript: ENST00000367149
  gene symbol: LEMD1
  hgvsc: ENST00000367149.3:c.*76A>G
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000495594
  gene symbol: LEMD1
  hgvsc: ENST00000495594.1:n.356A>G
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: stop_retained_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356120
  ensembl transcript: ENST00000367152
  gene symbol: LEMD1
  hgvsc: ENST00000367152.1:c.422A>G
  hgvsp: ENST00000367152.1:c.422A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000226235
  ensembl transcript: ENST00000447832
  gene symbol: LEMD1-AS1
  hgvsc: ENST00000447832.1:n.456-368T>C
  variant of: http://identifiers.org/hgnc/44132
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000476884
  gene symbol: LEMD1
  hgvsc: ENST00000476884.1:n.436A>G
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: stop_retained_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356121
  ensembl transcript: ENST00000367153
  gene symbol: LEMD1
  hgvsc: ENST00000367153.4:c.545A>G
  hgvsp: ENST00000367153.4:c.545A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356122
  ensembl transcript: ENST00000367154
  gene symbol: LEMD1
  hgvsc: ENST00000367154.1:c.*76A>G
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: stop_retained_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356119
  ensembl transcript: ENST00000367151
  gene symbol: LEMD1
  hgvsc: ENST00000367151.2:c.422A>G
  hgvsp: ENST00000367151.2:c.422A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18725
canonical: true
consequence: stop retained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6094
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3591
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4884
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3943
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6523
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3276
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ter182Ter
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ

1-205350798-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205350798
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205350798
    reference: chr 1
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356121
  ensembl transcript: ENST00000367153
  gene symbol: LEMD1
  hgvsc: ENST00000367153.4:c.534G>C
  hgvsp: ENST00000367153.4:c.534G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356117
  ensembl transcript: ENST00000367149
  gene symbol: LEMD1
  hgvsc: ENST00000367149.3:c.*65G>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000375801
  ensembl transcript: ENST00000391936
  gene symbol: LEMD1
  hgvsc: ENST00000391936.2:c.*65G>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356122
  ensembl transcript: ENST00000367154
  gene symbol: LEMD1
  hgvsc: ENST00000367154.1:c.*65G>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356120
  ensembl transcript: ENST00000367152
  gene symbol: LEMD1
  hgvsc: ENST00000367152.1:c.411G>C
  hgvsp: ENST00000367152.1:c.411G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000226235
  ensembl transcript: ENST00000447832
  gene symbol: LEMD1-AS1
  hgvsc: ENST00000447832.1:n.456-357C>G
  variant of: http://identifiers.org/hgnc/44132
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356119
  ensembl transcript: ENST00000367151
  gene symbol: LEMD1
  hgvsc: ENST00000367151.2:c.411G>C
  hgvsp: ENST00000367151.2:c.411G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000495594
  gene symbol: LEMD1
  hgvsc: ENST00000495594.1:n.345G>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000476884
  gene symbol: LEMD1
  hgvsc: ENST00000476884.1:n.425G>C
  variant of: http://identifiers.org/hgnc/18725
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4884
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6523
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6094
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1801
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1960
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1889
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser178Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

1-205350799-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205350799
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205350799
    reference: chr 1
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356122
  ensembl transcript: ENST00000367154
  gene symbol: LEMD1
  hgvsc: ENST00000367154.1:c.*64C>T
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356117
  ensembl transcript: ENST00000367149
  gene symbol: LEMD1
  hgvsc: ENST00000367149.3:c.*64C>T
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356120
  ensembl transcript: ENST00000367152
  gene symbol: LEMD1
  hgvsc: ENST00000367152.1:c.410C>T
  hgvsp: ENSP00000356120.1:p.Ser137Leu
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356121
  ensembl transcript: ENST00000367153
  gene symbol: LEMD1
  hgvsc: ENST00000367153.4:c.533C>T
  hgvsp: ENSP00000356121.4:p.Ser178Leu
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000375801
  ensembl transcript: ENST00000391936
  gene symbol: LEMD1
  hgvsc: ENST00000391936.2:c.*64C>T
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000495594
  gene symbol: LEMD1
  hgvsc: ENST00000495594.1:n.344C>T
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000226235
  ensembl transcript: ENST00000447832
  gene symbol: LEMD1-AS1
  hgvsc: ENST00000447832.1:n.456-356G>A
  variant of: http://identifiers.org/hgnc/44132
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356119
  ensembl transcript: ENST00000367151
  gene symbol: LEMD1
  hgvsc: ENST00000367151.2:c.410C>T
  hgvsp: ENSP00000356119.2:p.Ser137Leu
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000476884
  gene symbol: LEMD1
  hgvsc: ENST00000476884.1:n.424C>T
  variant of: http://identifiers.org/hgnc/18725
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3947
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6405
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4884
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6523
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2151
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser178Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

1-205350810-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205350810
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205350810
    reference: chr 1
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000495594
  gene symbol: LEMD1
  hgvsc: ENST00000495594.1:n.333G>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356122
  ensembl transcript: ENST00000367154
  gene symbol: LEMD1
  hgvsc: ENST00000367154.1:c.*53G>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356119
  ensembl transcript: ENST00000367151
  gene symbol: LEMD1
  hgvsc: ENST00000367151.2:c.399G>A
  hgvsp: ENST00000367151.2:c.399G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000476884
  gene symbol: LEMD1
  hgvsc: ENST00000476884.1:n.413G>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356121
  ensembl transcript: ENST00000367153
  gene symbol: LEMD1
  hgvsc: ENST00000367153.4:c.522G>A
  hgvsp: ENST00000367153.4:c.522G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356120
  ensembl transcript: ENST00000367152
  gene symbol: LEMD1
  hgvsc: ENST00000367152.1:c.399G>A
  hgvsp: ENST00000367152.1:c.399G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356117
  ensembl transcript: ENST00000367149
  gene symbol: LEMD1
  hgvsc: ENST00000367149.3:c.*53G>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000226235
  ensembl transcript: ENST00000447832
  gene symbol: LEMD1-AS1
  hgvsc: ENST00000447832.1:n.456-345C>T
  variant of: http://identifiers.org/hgnc/44132
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000375801
  ensembl transcript: ENST00000391936
  gene symbol: LEMD1
  hgvsc: ENST00000391936.2:c.*53G>A
  variant of: http://identifiers.org/hgnc/18725
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6524
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3947
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6405
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val174Val
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

1-205350811-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205350811
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205350811
    reference: chr 1
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000495594
  gene symbol: LEMD1
  hgvsc: ENST00000495594.1:n.332T>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356119
  ensembl transcript: ENST00000367151
  gene symbol: LEMD1
  hgvsc: ENST00000367151.2:c.398T>C
  hgvsp: ENSP00000356119.2:p.Val133Ala
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000375801
  ensembl transcript: ENST00000391936
  gene symbol: LEMD1
  hgvsc: ENST00000391936.2:c.*52T>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356120
  ensembl transcript: ENST00000367152
  gene symbol: LEMD1
  hgvsc: ENST00000367152.1:c.398T>C
  hgvsp: ENSP00000356120.1:p.Val133Ala
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000476884
  gene symbol: LEMD1
  hgvsc: ENST00000476884.1:n.412T>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356122
  ensembl transcript: ENST00000367154
  gene symbol: LEMD1
  hgvsc: ENST00000367154.1:c.*52T>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356117
  ensembl transcript: ENST00000367149
  gene symbol: LEMD1
  hgvsc: ENST00000367149.3:c.*52T>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356121
  ensembl transcript: ENST00000367153
  gene symbol: LEMD1
  hgvsc: ENST00000367153.4:c.521T>C
  hgvsp: ENSP00000356121.4:p.Val174Ala
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000226235
  ensembl transcript: ENST00000447832
  gene symbol: LEMD1-AS1
  hgvsc: ENST00000447832.1:n.456-344A>G
  variant of: http://identifiers.org/hgnc/44132
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3947
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6406
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6524
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val174Ala
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP

1-205350814-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205350814
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205350814
    reference: chr 1
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356117
  ensembl transcript: ENST00000367149
  gene symbol: LEMD1
  hgvsc: ENST00000367149.3:c.*49C>T
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000476884
  gene symbol: LEMD1
  hgvsc: ENST00000476884.1:n.409C>T
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356119
  ensembl transcript: ENST00000367151
  gene symbol: LEMD1
  hgvsc: ENST00000367151.2:c.395C>T
  hgvsp: ENSP00000356119.2:p.Thr132Ile
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356120
  ensembl transcript: ENST00000367152
  gene symbol: LEMD1
  hgvsc: ENST00000367152.1:c.395C>T
  hgvsp: ENSP00000356120.1:p.Thr132Ile
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000226235
  ensembl transcript: ENST00000447832
  gene symbol: LEMD1-AS1
  hgvsc: ENST00000447832.1:n.456-341G>A
  variant of: http://identifiers.org/hgnc/44132
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000375801
  ensembl transcript: ENST00000391936
  gene symbol: LEMD1
  hgvsc: ENST00000391936.2:c.*49C>T
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356121
  ensembl transcript: ENST00000367153
  gene symbol: LEMD1
  hgvsc: ENST00000367153.4:c.518C>T
  hgvsp: ENSP00000356121.4:p.Thr173Ile
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000495594
  gene symbol: LEMD1
  hgvsc: ENST00000495594.1:n.329C>T
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356122
  ensembl transcript: ENST00000367154
  gene symbol: LEMD1
  hgvsc: ENST00000367154.1:c.*49C>T
  variant of: http://identifiers.org/hgnc/18725
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3947
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6524
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6406
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3695
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr173Ile
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

1-205350818-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205350818
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205350818
    reference: chr 1
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356121
  ensembl transcript: ENST00000367153
  gene symbol: LEMD1
  hgvsc: ENST00000367153.4:c.514C>T
  hgvsp: ENST00000367153.4:c.514C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000495594
  gene symbol: LEMD1
  hgvsc: ENST00000495594.1:n.325C>T
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000226235
  ensembl transcript: ENST00000447832
  gene symbol: LEMD1-AS1
  hgvsc: ENST00000447832.1:n.456-337G>A
  variant of: http://identifiers.org/hgnc/44132
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000476884
  gene symbol: LEMD1
  hgvsc: ENST00000476884.1:n.405C>T
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356120
  ensembl transcript: ENST00000367152
  gene symbol: LEMD1
  hgvsc: ENST00000367152.1:c.391C>T
  hgvsp: ENST00000367152.1:c.391C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000375801
  ensembl transcript: ENST00000391936
  gene symbol: LEMD1
  hgvsc: ENST00000391936.2:c.*45C>T
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356117
  ensembl transcript: ENST00000367149
  gene symbol: LEMD1
  hgvsc: ENST00000367149.3:c.*45C>T
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356119
  ensembl transcript: ENST00000367151
  gene symbol: LEMD1
  hgvsc: ENST00000367151.2:c.391C>T
  hgvsp: ENST00000367151.2:c.391C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356122
  ensembl transcript: ENST00000367154
  gene symbol: LEMD1
  hgvsc: ENST00000367154.1:c.*45C>T
  variant of: http://identifiers.org/hgnc/18725
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6406
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4884
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3695
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3946
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6094
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2151
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1801
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3275
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu172Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

1-205350828-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205350828
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205350828
    reference: chr 1
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356121
  ensembl transcript: ENST00000367153
  gene symbol: LEMD1
  hgvsc: ENST00000367153.4:c.504G>A
  hgvsp: ENST00000367153.4:c.504G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000375801
  ensembl transcript: ENST00000391936
  gene symbol: LEMD1
  hgvsc: ENST00000391936.2:c.*35G>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356117
  ensembl transcript: ENST00000367149
  gene symbol: LEMD1
  hgvsc: ENST00000367149.3:c.*35G>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000476884
  gene symbol: LEMD1
  hgvsc: ENST00000476884.1:n.395G>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000226235
  ensembl transcript: ENST00000447832
  gene symbol: LEMD1-AS1
  hgvsc: ENST00000447832.1:n.456-327C>T
  variant of: http://identifiers.org/hgnc/44132
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356119
  ensembl transcript: ENST00000367151
  gene symbol: LEMD1
  hgvsc: ENST00000367151.2:c.381G>A
  hgvsp: ENST00000367151.2:c.381G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356120
  ensembl transcript: ENST00000367152
  gene symbol: LEMD1
  hgvsc: ENST00000367152.1:c.381G>A
  hgvsp: ENST00000367152.1:c.381G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000495594
  gene symbol: LEMD1
  hgvsc: ENST00000495594.1:n.315G>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356122
  ensembl transcript: ENST00000367154
  gene symbol: LEMD1
  hgvsc: ENST00000367154.1:c.*35G>A
  variant of: http://identifiers.org/hgnc/18725
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6094
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6406
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3946
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3695
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6525
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1891
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val168Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD

1-205350833-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205350833
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205350833
    reference: chr 1
allele count: 8
allele frequency: 6.589243060703402e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000375801
  ensembl transcript: ENST00000391936
  gene symbol: LEMD1
  hgvsc: ENST00000391936.2:c.*30G>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356122
  ensembl transcript: ENST00000367154
  gene symbol: LEMD1
  hgvsc: ENST00000367154.1:c.*30G>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000495594
  gene symbol: LEMD1
  hgvsc: ENST00000495594.1:n.310G>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000476884
  gene symbol: LEMD1
  hgvsc: ENST00000476884.1:n.390G>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356120
  ensembl transcript: ENST00000367152
  gene symbol: LEMD1
  hgvsc: ENST00000367152.1:c.376G>A
  hgvsp: ENSP00000356120.1:p.Val126Met
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356121
  ensembl transcript: ENST00000367153
  gene symbol: LEMD1
  hgvsc: ENST00000367153.4:c.499G>A
  hgvsp: ENSP00000356121.4:p.Val167Met
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356119
  ensembl transcript: ENST00000367151
  gene symbol: LEMD1
  hgvsc: ENST00000367151.2:c.376G>A
  hgvsp: ENSP00000356119.2:p.Val126Met
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356117
  ensembl transcript: ENST00000367149
  gene symbol: LEMD1
  hgvsc: ENST00000367149.3:c.*30G>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000226235
  ensembl transcript: ENST00000447832
  gene symbol: LEMD1-AS1
  hgvsc: ENST00000447832.1:n.456-322C>T
  variant of: http://identifiers.org/hgnc/44132
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3943
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6406
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3695
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1801
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val167Met
num of homozygotes: 1
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

1-205350834-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205350834
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205350834
    reference: chr 1
allele count: 7
allele frequency: 5.765587678115476e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000375801
  ensembl transcript: ENST00000391936
  gene symbol: LEMD1
  hgvsc: ENST00000391936.2:c.*29T>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356117
  ensembl transcript: ENST00000367149
  gene symbol: LEMD1
  hgvsc: ENST00000367149.3:c.*29T>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000476884
  gene symbol: LEMD1
  hgvsc: ENST00000476884.1:n.389T>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000495594
  gene symbol: LEMD1
  hgvsc: ENST00000495594.1:n.309T>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356121
  ensembl transcript: ENST00000367153
  gene symbol: LEMD1
  hgvsc: ENST00000367153.4:c.498T>A
  hgvsp: ENST00000367153.4:c.498T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356119
  ensembl transcript: ENST00000367151
  gene symbol: LEMD1
  hgvsc: ENST00000367151.2:c.375T>A
  hgvsp: ENST00000367151.2:c.375T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356122
  ensembl transcript: ENST00000367154
  gene symbol: LEMD1
  hgvsc: ENST00000367154.1:c.*29T>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000226235
  ensembl transcript: ENST00000447832
  gene symbol: LEMD1-AS1
  hgvsc: ENST00000447832.1:n.456-321A>T
  variant of: http://identifiers.org/hgnc/44132
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356120
  ensembl transcript: ENST00000367152
  gene symbol: LEMD1
  hgvsc: ENST00000367152.1:c.375T>A
  hgvsp: ENST00000367152.1:c.375T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18725
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6527
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4882
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6406
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3274
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile166Ile
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

1-205350846-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205350846
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205350846
    reference: chr 1
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356117
  ensembl transcript: ENST00000367149
  gene symbol: LEMD1
  hgvsc: ENST00000367149.3:c.*17T>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356121
  ensembl transcript: ENST00000367153
  gene symbol: LEMD1
  hgvsc: ENST00000367153.4:c.486T>C
  hgvsp: ENST00000367153.4:c.486T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356122
  ensembl transcript: ENST00000367154
  gene symbol: LEMD1
  hgvsc: ENST00000367154.1:c.*17T>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000375801
  ensembl transcript: ENST00000391936
  gene symbol: LEMD1
  hgvsc: ENST00000391936.2:c.*17T>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000226235
  ensembl transcript: ENST00000447832
  gene symbol: LEMD1-AS1
  hgvsc: ENST00000447832.1:n.456-309A>G
  variant of: http://identifiers.org/hgnc/44132
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356120
  ensembl transcript: ENST00000367152
  gene symbol: LEMD1
  hgvsc: ENST00000367152.1:c.363T>C
  hgvsp: ENST00000367152.1:c.363T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356119
  ensembl transcript: ENST00000367151
  gene symbol: LEMD1
  hgvsc: ENST00000367151.2:c.363T>C
  hgvsp: ENST00000367151.2:c.363T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000476884
  gene symbol: LEMD1
  hgvsc: ENST00000476884.1:n.377T>C
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000495594
  gene symbol: LEMD1
  hgvsc: ENST00000495594.1:n.297T>C
  variant of: http://identifiers.org/hgnc/18725
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6406
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6529
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4689
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3695
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly162Gly
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

1-205350852-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205350852
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205350852
    reference: chr 1
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000375801
  ensembl transcript: ENST00000391936
  gene symbol: LEMD1
  hgvsc: ENST00000391936.2:c.*11G>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000495594
  gene symbol: LEMD1
  hgvsc: ENST00000495594.1:n.291G>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000476884
  gene symbol: LEMD1
  hgvsc: ENST00000476884.1:n.371G>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356119
  ensembl transcript: ENST00000367151
  gene symbol: LEMD1
  hgvsc: ENST00000367151.2:c.357G>A
  hgvsp: ENST00000367151.2:c.357G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356120
  ensembl transcript: ENST00000367152
  gene symbol: LEMD1
  hgvsc: ENST00000367152.1:c.357G>A
  hgvsp: ENST00000367152.1:c.357G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000226235
  ensembl transcript: ENST00000447832
  gene symbol: LEMD1-AS1
  hgvsc: ENST00000447832.1:n.456-303C>T
  variant of: http://identifiers.org/hgnc/44132
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356121
  ensembl transcript: ENST00000367153
  gene symbol: LEMD1
  hgvsc: ENST00000367153.4:c.480G>A
  hgvsp: ENST00000367153.4:c.480G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356117
  ensembl transcript: ENST00000367149
  gene symbol: LEMD1
  hgvsc: ENST00000367149.3:c.*11G>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356122
  ensembl transcript: ENST00000367154
  gene symbol: LEMD1
  hgvsc: ENST00000367154.1:c.*11G>A
  variant of: http://identifiers.org/hgnc/18725
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6529
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4689
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6406
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3695
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2152
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val160Val
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

1-205350854-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205350854
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205350854
    reference: chr 1
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356119
  ensembl transcript: ENST00000367151
  gene symbol: LEMD1
  hgvsc: ENST00000367151.2:c.355G>A
  hgvsp: ENSP00000356119.2:p.Val119Met
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356121
  ensembl transcript: ENST00000367153
  gene symbol: LEMD1
  hgvsc: ENST00000367153.4:c.478G>A
  hgvsp: ENSP00000356121.4:p.Val160Met
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356117
  ensembl transcript: ENST00000367149
  gene symbol: LEMD1
  hgvsc: ENST00000367149.3:c.*9G>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000476884
  gene symbol: LEMD1
  hgvsc: ENST00000476884.1:n.369G>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356120
  ensembl transcript: ENST00000367152
  gene symbol: LEMD1
  hgvsc: ENST00000367152.1:c.355G>A
  hgvsp: ENSP00000356120.1:p.Val119Met
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000495594
  gene symbol: LEMD1
  hgvsc: ENST00000495594.1:n.289G>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000226235
  ensembl transcript: ENST00000447832
  gene symbol: LEMD1-AS1
  hgvsc: ENST00000447832.1:n.456-301C>T
  variant of: http://identifiers.org/hgnc/44132
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000375801
  ensembl transcript: ENST00000391936
  gene symbol: LEMD1
  hgvsc: ENST00000391936.2:c.*9G>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356122
  ensembl transcript: ENST00000367154
  gene symbol: LEMD1
  hgvsc: ENST00000367154.1:c.*9G>A
  variant of: http://identifiers.org/hgnc/18725
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6406
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6530
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3695
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6092
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4884
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4689
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1891
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val160Met
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum

1-205350867-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 205350867
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 205350867
    reference: chr 1
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356117
  ensembl transcript: ENST00000367149
  gene symbol: LEMD1
  hgvsc: ENST00000367149.3:c.200C>A
  hgvsp: ENSP00000356117.3:p.Ala67Asp
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000375801
  ensembl transcript: ENST00000391936
  gene symbol: LEMD1
  hgvsc: ENST00000391936.2:c.323C>A
  hgvsp: ENSP00000375801.2:p.Ala108Asp
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356120
  ensembl transcript: ENST00000367152
  gene symbol: LEMD1
  hgvsc: ENST00000367152.1:c.342C>A
  hgvsp: ENST00000367152.1:c.342C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356121
  ensembl transcript: ENST00000367153
  gene symbol: LEMD1
  hgvsc: ENST00000367153.4:c.465C>A
  hgvsp: ENST00000367153.4:c.465C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000476884
  gene symbol: LEMD1
  hgvsc: ENST00000476884.1:n.356C>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000226235
  ensembl transcript: ENST00000447832
  gene symbol: LEMD1-AS1
  hgvsc: ENST00000447832.1:n.456-288G>T
  variant of: http://identifiers.org/hgnc/44132
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356122
  ensembl transcript: ENST00000367154
  gene symbol: LEMD1
  hgvsc: ENST00000367154.1:c.323C>A
  hgvsp: ENSP00000356122.1:p.Ala108Asp
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186007
  ensembl transcript: ENST00000495594
  gene symbol: LEMD1
  hgvsc: ENST00000495594.1:n.276C>A
  variant of: http://identifiers.org/hgnc/18725
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186007
  ensembl protein: ENSP00000356119
  ensembl transcript: ENST00000367151
  gene symbol: LEMD1
  hgvsc: ENST00000367151.2:c.342C>A
  hgvsp: ENST00000367151.2:c.342C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18725
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3695
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6092
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6530
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6406
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1893
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2152
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala67Asp
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9249
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 780
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1472
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2632
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1114
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.538130248869474e-5
allele num: 65014
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10084
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 4.32e0

QD
type: SiteQuality
SIO_000300: 1.171e1

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

VQSLOD
type: SiteQuality
SIO_000300: 3.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.608132e6

GenotypeQuality
all individuals: 1111
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1498
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2726
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9249
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 780
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.698677800974252e-5
allele num: 11496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65010
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10092
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.607186e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.63e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.579e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.86e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.97e-1

GenotypeQuality
all individuals: 93
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 779
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 57
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1107
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2625
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9232
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067961165048543e-5
allele num: 16480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10086
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64996
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.16e1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.45e0

DP
type: SiteQuality
SIO_000300: 1.606147e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e0

FS
type: SiteQuality
SIO_000300: 2.402e0

GenotypeQuality
all individuals: 2621
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1537
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2716
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1102
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9226
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64980
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.918666931164451e-5
allele num: 10082
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.005e1

VQSLOD
type: SiteQuality
SIO_000300: 6.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

FS
type: SiteQuality
SIO_000300: 1.047e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -9.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.307e0

MQRankSum
type: SiteQuality
SIO_000300: 2.6e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.6054e6

GenotypeQuality
all individuals: 79
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1729
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1084
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2685
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40629
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 884
bin: 9.75e1
variant carriers: 247

GenotypeQuality
all individuals: 181
bin: 5.25e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.141552511415525e-3
allele num: 876
num of homozygotes: 0

African
type: Population
allele count: 234
allele frequency: 2.322811197141155e-2
allele num: 10074
num of homozygotes: 1

Latino
type: Population
allele count: 12
allele frequency: 1.04602510460251e-3
allele num: 11472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.540642139643804e-5
allele num: 64908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.599664e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.371e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.36e-1

QD
type: SiteQuality
SIO_000300: 1.309e1

FS
type: SiteQuality
SIO_000300: 5.649999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.93e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.32e0

MQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

GenotypeQuality
all individuals: 155
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2586
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40589
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9142
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2695
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10044
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.541354542371836e-5
allele num: 64878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6408
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.59192e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.338e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

FS
type: SiteQuality
SIO_000300: 7.262e0

QD
type: SiteQuality
SIO_000300: 1.438e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.43e-1

GenotypeQuality
all individuals: 40
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9015
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2639
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2536
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.177224572999351e-5
allele num: 64754
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9984
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6360
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.33e-1

QD
type: SiteQuality
SIO_000300: 1.294e1

DP
type: SiteQuality
SIO_000300: 1.582335e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.28e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.596e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.62e-1

GenotypeQuality
all individuals: 55
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3810
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2465
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37724
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8441
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 952
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16356
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.052123948286476e-4
allele num: 9746
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6144
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63796
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.97e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.62e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.76e-1

FS
type: SiteQuality
SIO_000300: 1.141e0

DP
type: SiteQuality
SIO_000300: 1.526208e6

QD
type: SiteQuality
SIO_000300: 1.567e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

GenotypeQuality
all individuals: 791
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 37238
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 947
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4016
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11310
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.181474480151229e-4
allele num: 8464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16348
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6124
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -6.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.85e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

QD
type: SiteQuality
SIO_000300: 1.344e1

VQSLOD
type: SiteQuality
SIO_000300: 6.38e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e-2

DP
type: SiteQuality
SIO_000300: 1.519223e6

GenotypeQuality
all individuals: 377
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2290
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8361
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 554
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2441
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 942
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63578
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.182312603452353e-4
allele num: 8458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6102
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11300
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9710
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16342
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

MQRankSum
type: SiteQuality
SIO_000300: 7.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.1e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

QD
type: SiteQuality
SIO_000300: 1.413e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

FS
type: SiteQuality
SIO_000300: 3.11e0

DP
type: SiteQuality
SIO_000300: 1.515872e6

GenotypeQuality
all individuals: 921
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 932
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8189
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2398
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35436
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 753
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2246
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.580777742649383e-5
allele num: 63260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11274
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6060
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16318
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9620
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.05e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.369e0

DP
type: SiteQuality
SIO_000300: 1.500824e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.46e-1

FS
type: SiteQuality
SIO_000300: 1.2282e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

QD
type: SiteQuality
SIO_000300: 1.363e1

GenotypeQuality
all individuals: 2240
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 857
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 937
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4782
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 884
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62766
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11212
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5962
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.376425855513308e-4
allele num: 8416
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.213e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e-1

FS
type: SiteQuality
SIO_000300: 3.761e0

MQRankSum
type: SiteQuality
SIO_000300: 9.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 9.61e-1

DP
type: SiteQuality
SIO_000300: 1.479203e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 839
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 834
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 923
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2073
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2222
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7798
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 887
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16272
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5966
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9472
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.782848992690319e-4
allele num: 11218
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

FS
type: SiteQuality
SIO_000300: 3.614e0

QD
type: SiteQuality
SIO_000300: 1.301e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.19e-1

DP
type: SiteQuality
SIO_000300: 1.477124e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.721e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.91e-1

GenotypeQuality
all individuals: 740
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 1021
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7719
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35785
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2190
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2035
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 821
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11178
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.397391637897967e-4
allele num: 62568
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.06315118009781e-4
allele num: 9406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16224
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.526e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.92e0

QD
type: SiteQuality
SIO_000300: 1.336e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

DP
type: SiteQuality
SIO_000300: 1.465617e6

MQ
type: SiteQuality
SIO_000300: 5.968e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.23e-1

GenotypeQuality
all individuals: 1163
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34819
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7512
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2148
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 887
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 883
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 300
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2004
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16196
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11156
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.601332308480656e-5
allele num: 62448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5870
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.323e0

QD
type: SiteQuality
SIO_000300: 7.55e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.769e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.67e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.925e0

DP
type: SiteQuality
SIO_000300: 1.458098e6

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 876
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7454
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1023
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5359
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 861
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2123
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1048
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 799
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35259
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1065
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11148
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16194
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62400
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.069747539580659e-4
allele num: 9348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5858
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.65e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.446e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

MQ
type: SiteQuality
SIO_000300: 5.833e1

DP
type: SiteQuality
SIO_000300: 1.458261e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

QD
type: SiteQuality
SIO_000300: 1.596e1

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 690
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 788
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7349
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36032
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1030
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1946
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.195314367678699e-4
allele num: 8366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5812
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9278
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16178
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62286
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.789e1

MQRankSum
type: SiteQuality
SIO_000300: 4.15e-1

QD
type: SiteQuality
SIO_000300: 1.281e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.039e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

DP
type: SiteQuality
SIO_000300: 1.451763e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.09e-1

GenotypeQuality
all individuals: 496
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2021
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 893
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 756
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6005
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1164
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1116
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35132
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7197
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16094
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5754
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8336
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.617233237377495e-5
allele num: 61834
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9120
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.46e-1

MQ
type: SiteQuality
SIO_000300: 5.811e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.214e0

VQSLOD
type: SiteQuality
SIO_000300: -2.783e0

DP
type: SiteQuality
SIO_000300: 1.43477e6

FS
type: SiteQuality
SIO_000300: 1.84e0

QD
type: SiteQuality
SIO_000300: 3.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.79e0

GenotypeQuality
all individuals: 49
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1147
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1171
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6018
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34923
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1903
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7191
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11082
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9076
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.620535424904389e-5
allele num: 61708
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8326
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16076
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.431133e6

FS
type: SiteQuality
SIO_000300: 1.875e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.86e-1

QD
type: SiteQuality
SIO_000300: 1.474e1

VQSLOD
type: SiteQuality
SIO_000300: 7.94e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

GenotypeQuality
all individuals: 438
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6018
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1903
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2018
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34923
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7191
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.241070849808777e-5
allele num: 61708
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16076
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9076
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11082
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.201056930098487e-4
allele num: 8326
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

DP
type: SiteQuality
SIO_000300: 1.431133e6

FS
type: SiteQuality
SIO_000300: 1.875e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.932e1

VQSLOD
type: SiteQuality
SIO_000300: 7.94e-1

QD
type: SiteQuality
SIO_000300: 1.474e1

GenotypeQuality
all individuals: 62
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1240
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 935
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 731
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1853
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1960
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1232
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 836
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6348
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8966
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.873594803897077e-4
allele num: 16012
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11024
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61292
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.0e-2

QD
type: SiteQuality
SIO_000300: 1.295e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.28e-1

FS
type: SiteQuality
SIO_000300: 1.427e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.87e0

DP
type: SiteQuality
SIO_000300: 1.418759e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.867e0

GenotypeQuality
all individuals: 1801
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1395
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 794
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 803
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6588
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1695
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1347
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7793
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5436
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.376737661012626e-5
allele num: 15682
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8150
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60194
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.376327e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.51e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.96e0

QD
type: SiteQuality
SIO_000300: 9.199999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.79e-1

GenotypeQuality
all individuals: 62
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8529
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1509
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31383
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1494
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1710
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 958
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1424
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1617
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1056
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8102
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10812
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59684
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15358
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.170411985018727e-4
allele num: 8544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.354911e6

QD
type: SiteQuality
SIO_000300: 1.008e1

MQRankSum
type: SiteQuality
SIO_000300: -2.341e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.53e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.146e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.643e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

GenotypeQuality
all individuals: 198
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8596
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6193
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 864
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1476
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 958
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1604
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31897
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10810
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15356
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8096
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.67464916100077e-5
allele num: 59714
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.917e0

DP
type: SiteQuality
SIO_000300: 1.354504e6

MQRankSum
type: SiteQuality
SIO_000300: -1.16e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.256e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

VQSLOD
type: SiteQuality
SIO_000300: -1.21e0

QD
type: SiteQuality
SIO_000300: 5.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.44e-1

GenotypeQuality
all individuals: 1387
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1958
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1739
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1518
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1427
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 11671
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 9.75e1
variant carriers: 23

GenotypeQuality
all individuals: 30103
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58234
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5148
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.442870632672332e-5
allele num: 10590
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.366120218579235e-3
allele num: 732
num of homozygotes: 0

African
type: Population
allele count: 22
allele frequency: 2.702038811102923e-3
allele num: 8142
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7952
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.41e-1

DP
type: SiteQuality
SIO_000300: 1.291094e6

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.018e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-3

FS
type: SiteQuality
SIO_000300: 5.86e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e-1

GenotypeQuality
all individuals: 623
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1553
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1878
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5575
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 216
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 608
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1394
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2118
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1462
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.929273084479371e-4
allele num: 5090
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7902
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.25e-4
allele num: 8000
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.901502186727515e-4
allele num: 10518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 39
allele frequency: 6.748338870431893e-4
allele num: 57792
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.1291696238467e-4
allele num: 14090
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.129e1

FS
type: SiteQuality
SIO_000300: 1.862e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

DP
type: SiteQuality
SIO_000300: 1.272408e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.46e-1

GenotypeQuality
all individuals: 415
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2485
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2742
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2884
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1311
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24341
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1200
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55990
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4848
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.639419404125286e-5
allele num: 13090
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10228
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.03e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 7.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.626e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.12e-1

DP
type: SiteQuality
SIO_000300: 1.185953e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

FS
type: SiteQuality
SIO_000300: 1.465e0

MQRankSum
type: SiteQuality
SIO_000300: -4.82e-1

GenotypeQuality
all individuals: 3854
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2631
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4318
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17108
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1053
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11670
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.891789632992811e-5
allele num: 52860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7382
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6728
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.8e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.18e-1

QD
type: SiteQuality
SIO_000300: 8.84e0

VQSLOD
type: SiteQuality
SIO_000300: -1.797e0

MQRankSum
type: SiteQuality
SIO_000300: 1.99e0

DP
type: SiteQuality
SIO_000300: 1.0508e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.5e-3

GenotypeQuality
all individuals: 555
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1093
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 866
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1252
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4272
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15352
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5377
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1547
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11467
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.982160555004955e-5
allele num: 50450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7140
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4224
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9556
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.63033e5

QD
type: SiteQuality
SIO_000300: 2.047e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.102e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.634e0

FS
type: SiteQuality
SIO_000300: 3.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.06e-2

GenotypeQuality
all individuals: 2643
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 878
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1552
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5335
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1280
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1055
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4232
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15446
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1461
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3905
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.049097775912715e-4
allele num: 9532
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 4.821600771456124e-4
allele num: 6222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4208
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7120
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10186
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.46e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.136e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.6015e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.31e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.3e-2

QD
type: SiteQuality
SIO_000300: 1.05e1

DP
type: SiteQuality
SIO_000300: 9.61466e5

GenotypeQuality
all individuals: 628
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1461
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1055
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4232
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1552
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1280
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 463
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11774
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 878
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15446
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2643
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.817396426467701e-5
allele num: 10186
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6222
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.986965506278811e-5
allele num: 50328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7120
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4208
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.6015e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.05e0

VQSLOD
type: SiteQuality
SIO_000300: -4.136e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.31e-2

QD
type: SiteQuality
SIO_000300: 1.05e1

DP
type: SiteQuality
SIO_000300: 9.61466e5

GenotypeQuality
all individuals: 1376
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2091
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1712
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1932
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4352
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5634
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2626
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5758
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8727
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 189
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 785
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15133
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6916
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9302
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5932
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.086720278200391e-4
allele num: 9202
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3924
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48720
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.16e-2

DP
type: SiteQuality
SIO_000300: 9.14523e5

QD
type: SiteQuality
SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.506e0

VQSLOD
type: SiteQuality
SIO_000300: -2.815e0

GenotypeQuality
all individuals: 670
bin: 8.75e1
variant carriers: 658

GenotypeQuality
all individuals: 1063
bin: 5.25e1
variant carriers: 894

GenotypeQuality
all individuals: 2319
bin: 3.75e1
variant carriers: 697

GenotypeQuality
all individuals: 1409
bin: 1.25e1
variant carriers: 363

GenotypeQuality
all individuals: 1607
bin: 1.75e1
variant carriers: 631

GenotypeQuality
all individuals: 3035
bin: 6.25e1
variant carriers: 883

GenotypeQuality
all individuals: 2586
bin: 2.75e1
variant carriers: 488

GenotypeQuality
all individuals: 2609
bin: 2.5e0
variant carriers: 105

GenotypeQuality
all individuals: 1240
bin: 4.75e1
variant carriers: 819

GenotypeQuality
all individuals: 8745
bin: 2.25e1
variant carriers: 731

GenotypeQuality
all individuals: 826
bin: 7.75e1
variant carriers: 744

GenotypeQuality
all individuals: 716
bin: 9.25e1
variant carriers: 708

GenotypeQuality
all individuals: 20106
bin: 9.75e1
variant carriers: 20063

GenotypeQuality
all individuals: 1109
bin: 6.75e1
variant carriers: 765

East Asian
type: Population
allele count: 2578
allele frequency: 3.865067466266867e-1
allele num: 6670
num of homozygotes: 440

South Asian
type: Population
allele count: 2876
allele frequency: 3.252657769735354e-1
allele num: 8842
num of homozygotes: 436

European (Finnish)
type: Population
allele count: 1552
allele frequency: 4.174287251210328e-1
allele num: 3718
num of homozygotes: 281

Latino
type: Population
allele count: 3641
allele frequency: 4.070885509838998e-1
allele num: 8944
num of homozygotes: 661

African
type: Population
allele count: 1546
allele frequency: 2.661845730027548e-1
allele num: 5808
num of homozygotes: 182

Other
type: Population
allele count: 244
allele frequency: 4.674329501915709e-1
allele num: 522
num of homozygotes: 54

European (Non-Finnish)
type: Population
allele count: 20282
allele frequency: 4.282155223376404e-1
allele num: 47364
num of homozygotes: 4014

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.58e-2

FS
type: SiteQuality
SIO_000300: 2.271e0

QD
type: SiteQuality
SIO_000300: 1.934e1

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.62e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.04e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.98114e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.221e0

GenotypeQuality
all individuals: 811
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 6559
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2330
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1528
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1732
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 179
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2145
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 64
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4893
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16713
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3320
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6352
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 26
allele frequency: 5.824633720148753e-4
allele num: 44638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7602
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.69e0

MQRankSum
type: SiteQuality
SIO_000300: 1.04e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.68225e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.19e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.54e-1

QD
type: SiteQuality
SIO_000300: 1.331e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.98e-1

GenotypeQuality
all individuals: 149
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1103
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14916
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2268
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 985
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2860
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7286
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4397
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4931
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3138
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6170
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5266
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.304147465437788e-5
allele num: 43400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7088
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.40025e5

FS
type: SiteQuality
SIO_000300: 3.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.33e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

QD
type: SiteQuality
SIO_000300: 4.81e0

GenotypeQuality
all individuals: 3772
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14261
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3078
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5483
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4947
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 251
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2161
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42770
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5192
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3042
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6096
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8184
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.437607820586544e-4
allele num: 6956
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.96e-1

FS
type: SiteQuality
SIO_000300: 1.931e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-2

QD
type: SiteQuality
SIO_000300: 2.301e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

VQSLOD
type: SiteQuality
SIO_000300: -2.101e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.32572e5

GenotypeQuality
all individuals: 251
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4947
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2161
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14261
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1161
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7330
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3078
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7313
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 281
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42770
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6096
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8184
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 4.312823461759632e-4
allele num: 6956
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3042
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

FS
type: SiteQuality
SIO_000300: 1.931e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.101e0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

DP
type: SiteQuality
SIO_000300: 7.32572e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.301e1

GenotypeQuality
all individuals: 698
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5113
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5561
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7307
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3000
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2258
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12779
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1385
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 247
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2552
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.351206434316354e-4
allele num: 5968
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8014
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 428
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5040
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6692
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41918
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2964
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.25e-1

FS
type: SiteQuality
SIO_000300: 5.992e0

DP
type: SiteQuality
SIO_000300: 7.2444e5

MQ
type: SiteQuality
SIO_000300: 5.875e1

VQSLOD
type: SiteQuality
SIO_000300: -1.369e0

QD
type: SiteQuality
SIO_000300: 1.078e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.55e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.783e0

GenotypeQuality
all individuals: 146
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7164
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 4862
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3003
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4871
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5571
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13063
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6732
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5974
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42092
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8022
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5052
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2970
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.684e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.0748e1

DP
type: SiteQuality
SIO_000300: 7.23893e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.49e-2

QD
type: SiteQuality
SIO_000300: 5.43e0

GenotypeQuality
all individuals: 2993
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4687
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5577
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13201
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7222
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7304
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2253
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2864
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4843
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 61
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5982
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8032
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5060
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2986
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.379479369913863e-5
allele num: 42026
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6702
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.56e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.27e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

DP
type: SiteQuality
SIO_000300: 7.2346e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.113e0

FS
type: SiteQuality
SIO_000300: 1.642e0

QD
type: SiteQuality
SIO_000300: 1.058e1

GenotypeQuality
all individuals: 247
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4800
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5571
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3430
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6806
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2125
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1814
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2267
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7304
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.439619419370578e-5
allele num: 40990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4912
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5818
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.91e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e-1

DP
type: SiteQuality
SIO_000300: 7.20222e5

ClippingRankSum
type: SiteQuality
SIO_000300: 5.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.55e0

QD
type: SiteQuality
SIO_000300: 1.592e1

MQ
type: SiteQuality
SIO_000300: 5.89e1

FS
type: SiteQuality
SIO_000300: 4.26e0

VQSLOD
type: SiteQuality
SIO_000300: -1.439e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.66e-2

GenotypeQuality
all individuals: 493
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1304
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3510
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 841
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2030
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.734129947722181e-4
allele num: 2678
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 116
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 138
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7356
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 94
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.345e1

VQSLOD
type: SiteQuality
SIO_000300: -1.975e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.57702e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.99e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.03e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.83e0

GenotypeQuality
all individuals: 51
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2248
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3859
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 506
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 7.246376811594203e-3
allele num: 138
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 94
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2694
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.9e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.124e0

QD
type: SiteQuality
SIO_000300: 1.191e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.076e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-2

FS
type: SiteQuality
SIO_000300: 9.64e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.82e-1

DP
type: SiteQuality
SIO_000300: 1.61162e5

VQSLOD
type: SiteQuality
SIO_000300: -1.723e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

GenotypeQuality
all individuals: 265
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3967
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 138
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 94
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.698224852071006e-4
allele num: 2704
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.454e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.72e0

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

FS
type: SiteQuality
SIO_000300: 9.832000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.62e0

VQSLOD
type: SiteQuality
SIO_000300: -1.923e0

MQ
type: SiteQuality
SIO_000300: 5.9e1

DP
type: SiteQuality
SIO_000300: 1.61631e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.49e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.377e0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2273
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.339764201500536e-4
allele num: 7464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.94e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.148e-1

DP
type: SiteQuality
SIO_000300: 1.71719e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.2e-2

QD
type: SiteQuality
SIO_000300: 1.462e1

FS
type: SiteQuality
SIO_000300: 7.877e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.13e-2

MQ
type: SiteQuality
SIO_000300: 6.103e1

GenotypeQuality
all individuals: 432
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8216
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2173
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2712
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7448
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.391e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

QD
type: SiteQuality
SIO_000300: 5.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.55e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 1.72245e5

MQRankSum
type: SiteQuality
SIO_000300: -9.88e-1

GenotypeQuality
all individuals: 65
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1207
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1756
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1061
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1938
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3051
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2125
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47302
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 55
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1847
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66668
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.65e0

DP
type: SiteQuality
SIO_000300: 3.380546e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

MQ
type: SiteQuality
SIO_000300: 5.95e1

MQRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.719e1

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1071
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1772
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1212
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1863
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3146
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1952
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2133
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47309
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49947518368571e-5
allele num: 66690
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

DP
type: SiteQuality
SIO_000300: 3.383034e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.14e0

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.6e-1

QD
type: SiteQuality
SIO_000300: 1.442e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.462e0

GenotypeQuality
all individuals: 47309
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3146
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1863
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1952
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1071
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1212
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 2.887947631882942e-4
allele num: 10388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.635922918434129e-4
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.462e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.6e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-1

DP
type: SiteQuality
SIO_000300: 3.383034e6

QD
type: SiteQuality
SIO_000300: 1.442e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

VQSLOD
type: SiteQuality
SIO_000300: 4.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.48e-1

GenotypeQuality
all individuals: 1214
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47314
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1072
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1949
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1776
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1870
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3167
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998860433035446e-5
allele num: 66692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.386667e6

VQSLOD
type: SiteQuality
SIO_000300: 3.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.11e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.505e1

MQ
type: SiteQuality
SIO_000300: 5.98e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.55e0

GenotypeQuality
all individuals: 1870
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3167
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1776
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1072
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1949
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47314
bin: 9.75e1
variant carriers: 90

GenotypeQuality
all individuals: 2136
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 85
allele frequency: 1.274515684040065e-3
allele num: 66692
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.626492106276473e-5
allele num: 10388
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.592016588906169e-4
allele num: 11574
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.11e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 6.55e0

QD
type: SiteQuality
SIO_000300: 1.505e1

MQ
type: SiteQuality
SIO_000300: 5.98e1

DP
type: SiteQuality
SIO_000300: 3.386667e6

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1876
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2144
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47307
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1222
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1785
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1953
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.309e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.18e0

FS
type: SiteQuality
SIO_000300: 1.1351e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.38e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

DP
type: SiteQuality
SIO_000300: 3.3829e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.99e-1

QD
type: SiteQuality
SIO_000300: 1.907e1

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2146
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1223
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3237
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1786
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1879
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1951
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47310
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 1076
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 8.993344924755681e-5
allele num: 66716
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.84e-1

DP
type: SiteQuality
SIO_000300: 3.383553e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.194e0

FS
type: SiteQuality
SIO_000300: 1.102e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

QD
type: SiteQuality
SIO_000300: 1.277e1

VQSLOD
type: SiteQuality
SIO_000300: 9.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e-1

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1786
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1223
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2146
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1076
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1951
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.84e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.277e1

VQSLOD
type: SiteQuality
SIO_000300: 9.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.194e0

FS
type: SiteQuality
SIO_000300: 1.102e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e-1

DP
type: SiteQuality
SIO_000300: 3.383553e6

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1957
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2149
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3260
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47314
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1889
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.242e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.414e0

MQ
type: SiteQuality
SIO_000300: 5.988e1

FS
type: SiteQuality
SIO_000300: 7.542e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.919999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.74e-1

DP
type: SiteQuality
SIO_000300: 3.384227e6

VQSLOD
type: SiteQuality
SIO_000300: 3.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47316
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1888
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1960
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3273
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1083
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1799
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1227
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.988e1

VQSLOD
type: SiteQuality
SIO_000300: 4.51e-1

FS
type: SiteQuality
SIO_000300: 3.243e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.47e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

DP
type: SiteQuality
SIO_000300: 3.384517e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.929e0

MQRankSum
type: SiteQuality
SIO_000300: -7.4e-1

QD
type: SiteQuality
SIO_000300: 1.337e1

GenotypeQuality
all individuals: 1801
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1888
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47316
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1960
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2151
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1227
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.384706e6

FS
type: SiteQuality
SIO_000300: 6.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.41e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.06e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.49e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.51e-1

QD
type: SiteQuality
SIO_000300: 1.508e1

MQ
type: SiteQuality
SIO_000300: 5.979e1

GenotypeQuality
all individuals: 47317
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1227
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2152
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3275
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.61e-1

FS
type: SiteQuality
SIO_000300: 3.442e0

DP
type: SiteQuality
SIO_000300: 3.384715e6

MQ
type: SiteQuality
SIO_000300: 5.937e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.126e0

QD
type: SiteQuality
SIO_000300: 1.253e1

MQRankSum
type: SiteQuality
SIO_000300: -1.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.05e0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3272
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47317
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1801
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1889
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1960
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1227
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996703626011388e-5
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.036e0

QD
type: SiteQuality
SIO_000300: 1.179e1

VQSLOD
type: SiteQuality
SIO_000300: 7.78e-1

DP
type: SiteQuality
SIO_000300: 3.384887e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.666e0

FS
type: SiteQuality
SIO_000300: 6.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e0

MQRankSum
type: SiteQuality
SIO_000300: 1.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.981e1

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1960
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1890
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1801
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3276
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2151
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47317
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1227
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.384733e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.98e0

MQRankSum
type: SiteQuality
SIO_000300: 9.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.016e0

QD
type: SiteQuality
SIO_000300: 1.225e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e0

VQSLOD
type: SiteQuality
SIO_000300: 6.09e-1

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1960
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47318
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2151
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1890
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3275
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1227
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1801
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.726e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.383e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -5.818e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.172e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.003e0

QD
type: SiteQuality
SIO_000300: 1.451e1

DP
type: SiteQuality
SIO_000300: 3.384669e6

GenotypeQuality
all individuals: 47318
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1801
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2151
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3275
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1960
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1227
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1890
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996703626011388e-5
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.819e0

QD
type: SiteQuality
SIO_000300: 1.477e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e0

FS
type: SiteQuality
SIO_000300: 5.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.41e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.76e-1

DP
type: SiteQuality
SIO_000300: 3.384955e6

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1227
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1959
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47319
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1891
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.051e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

VQSLOD
type: SiteQuality
SIO_000300: 7.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 2.397e0

MQRankSum
type: SiteQuality
SIO_000300: -7.37e-1

QD
type: SiteQuality
SIO_000300: 1.3e1

DP
type: SiteQuality
SIO_000300: 3.384719e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.69e-1

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47319
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3275
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2151
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1227
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1801
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1959
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.642e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.804e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 2.493e0

MQRankSum
type: SiteQuality
SIO_000300: 2.09e0

DP
type: SiteQuality
SIO_000300: 3.384885e6

QD
type: SiteQuality
SIO_000300: 2.255e1

GenotypeQuality
all individuals: 47321
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3274
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2151
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1226
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1959
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1891
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.844961240310077e-4
allele num: 16512
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.044e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

QD
type: SiteQuality
SIO_000300: 1.471e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.667e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.75e-1

FS
type: SiteQuality
SIO_000300: 5.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

MQRankSum
type: SiteQuality
SIO_000300: 4.78e-1

DP
type: SiteQuality
SIO_000300: 3.385581e6

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1891
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2152
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1958
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47321
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 1801
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.591121091725686e-4
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.993407252022775e-5
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.5e-1

QD
type: SiteQuality
SIO_000300: 1.363e1

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

DP
type: SiteQuality
SIO_000300: 3.38606e6

MQ
type: SiteQuality
SIO_000300: 5.963e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 47321
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1082
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3275
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1801
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1958
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1226
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1891
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2152
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

DP
type: SiteQuality
SIO_000300: 3.384933e6

MQ
type: SiteQuality
SIO_000300: 5.979e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.62e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 8.36e-1

QD
type: SiteQuality
SIO_000300: 1.347e1

VQSLOD
type: SiteQuality
SIO_000300: 8.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.31e-1

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47321
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1958
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3275
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1891
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1801
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1226
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.384954e6

MQ
type: SiteQuality
SIO_000300: 5.966e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.738e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.604e0

MQRankSum
type: SiteQuality
SIO_000300: 5.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.860000000000001e-1

FS
type: SiteQuality
SIO_000300: 3.161e0

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

QD
type: SiteQuality
SIO_000300: 1.087e1

GenotypeQuality
all individuals: 1226
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2152
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47321
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1801
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3274
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1958
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-1

QD
type: SiteQuality
SIO_000300: 1.151e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.727e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

FS
type: SiteQuality
SIO_000300: 1.431e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.1e-1

MQ
type: SiteQuality
SIO_000300: 5.914e1

DP
type: SiteQuality
SIO_000300: 3.3848e6

MQRankSum
type: SiteQuality
SIO_000300: 8.0e-2

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3274
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0