4-2498817-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2498817
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2498817
    reference: chr 4
allele count: 2
allele frequency: 2.654420938072359e-5
allele num: 75346
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.93G>A
  hgvsp: ENST00000511600.1:c.93G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.93G>A
  hgvsp: ENST00000502316.1:c.93G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.93G>A
  hgvsp: ENST00000314289.8:c.93G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.93G>A
  hgvsp: ENST00000504224.1:c.93G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.93G>A
  hgvsp: ENST00000507247.1:c.93G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.93G>A
  hgvsp: ENST00000509258.1:c.93G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.93G>A
  hgvsp: ENST00000506706.1:c.93G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.93G>A
  hgvsp: ENST00000513284.1:c.93G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.93G>A
  hgvsp: ENST00000513578.1:c.93G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422619
  ensembl transcript: ENST00000513450
  gene symbol: RNF4
  hgvsc: ENST00000513450.1:c.93G>A
  hgvsp: ENST00000513450.1:c.93G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000503123
  gene symbol: RNF4
  hgvsc: ENST00000503123.1:n.285G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.312G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.267-3569G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.93G>A
  hgvsp: ENST00000511859.1:c.93G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.93G>A
  hgvsp: ENST00000541204.1:c.93G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.239G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000507784
  gene symbol: RNF4
  hgvsc: ENST00000507784.1:n.372G>A
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7007
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Leu31Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

4-2498826-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2498826
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2498826
    reference: chr 4
allele count: 1
allele frequency: 1.372570550126276e-5
allele num: 72856
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.102A>G
  hgvsp: ENST00000504224.1:c.102A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.102A>G
  hgvsp: ENST00000507247.1:c.102A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.102A>G
  hgvsp: ENST00000513578.1:c.102A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.102A>G
  hgvsp: ENST00000541204.1:c.102A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.102A>G
  hgvsp: ENST00000502316.1:c.102A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000503123
  gene symbol: RNF4
  hgvsc: ENST00000503123.1:n.294A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.102A>G
  hgvsp: ENST00000506706.1:c.102A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.102A>G
  hgvsp: ENST00000314289.8:c.102A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422619
  ensembl transcript: ENST00000513450
  gene symbol: RNF4
  hgvsc: ENST00000513450.1:c.102A>G
  hgvsp: ENST00000513450.1:c.102A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000507784
  gene symbol: RNF4
  hgvsc: ENST00000507784.1:n.381A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.267-3560A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.102A>G
  hgvsp: ENST00000513284.1:c.102A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.102A>G
  hgvsp: ENST00000509258.1:c.102A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.248A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.102A>G
  hgvsp: ENST00000511859.1:c.102A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.321A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.102A>G
  hgvsp: ENST00000511600.1:c.102A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8697
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu34Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

4-2498827-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2498827
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2498827
    reference: chr 4
allele count: 1
allele frequency: 1.372156206262521e-5
allele num: 72878
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.103C>G
  hgvsp: ENSP00000446369.1:p.Pro35Ala
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.103C>G
  hgvsp: ENSP00000422938.1:p.Pro35Ala
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.103C>G
  hgvsp: ENSP00000423100.1:p.Pro35Ala
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.103C>G
  hgvsp: ENSP00000424076.1:p.Pro35Ala
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000507784
  gene symbol: RNF4
  hgvsc: ENST00000507784.1:n.382C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.322C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.249C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.103C>G
  hgvsp: ENSP00000422500.1:p.Pro35Ala
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.103C>G
  hgvsp: ENSP00000422728.1:p.Pro35Ala
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.103C>G
  hgvsp: ENSP00000425724.1:p.Pro35Ala
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000503123
  gene symbol: RNF4
  hgvsc: ENST00000503123.1:n.295C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.103C>G
  hgvsp: ENSP00000315212.8:p.Pro35Ala
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422619
  ensembl transcript: ENST00000513450
  gene symbol: RNF4
  hgvsc: ENST00000513450.1:c.103C>G
  hgvsp: ENSP00000422619.1:p.Pro35Ala
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.103C>G
  hgvsp: ENSP00000426615.1:p.Pro35Ala
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.103C>G
  hgvsp: ENSP00000426503.1:p.Pro35Ala
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.103C>G
  hgvsp: ENSP00000425667.1:p.Pro35Ala
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.267-3559C>G
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro35Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

4-2498832-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2498832
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2498832
    reference: chr 4
allele count: 1
allele frequency: 1.412110257568911e-5
allele num: 70816
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.254A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.108A>G
  hgvsp: ENSP00000423100.1:p.Ile36Met
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.267-3554A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.108A>G
  hgvsp: ENSP00000424076.1:p.Ile36Met
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.108A>G
  hgvsp: ENSP00000426615.1:p.Ile36Met
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.327A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422619
  ensembl transcript: ENST00000513450
  gene symbol: RNF4
  hgvsc: ENST00000513450.1:c.108A>G
  hgvsp: ENSP00000422619.1:p.Ile36Met
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.108A>G
  hgvsp: ENSP00000422938.1:p.Ile36Met
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.108A>G
  hgvsp: ENSP00000425724.1:p.Ile36Met
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.108A>G
  hgvsp: ENSP00000422728.1:p.Ile36Met
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000507784
  gene symbol: RNF4
  hgvsc: ENST00000507784.1:n.387A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.108A>G
  hgvsp: ENSP00000446369.1:p.Ile36Met
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.108A>G
  hgvsp: ENSP00000315212.8:p.Ile36Met
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.108A>G
  hgvsp: ENSP00000425667.1:p.Ile36Met
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.108A>G
  hgvsp: ENSP00000422500.1:p.Ile36Met
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.108A>G
  hgvsp: ENSP00000426503.1:p.Ile36Met
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15594
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile36Met
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

4-2498838-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2498838
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2498838
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 68470
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.114C>T
  hgvsp: ENST00000504224.1:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.114C>T
  hgvsp: ENST00000513578.1:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422619
  ensembl transcript: ENST00000513450
  gene symbol: RNF4
  hgvsc: ENST00000513450.1:c.114C>T
  hgvsp: ENST00000513450.1:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.114C>T
  hgvsp: ENST00000507247.1:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.114C>T
  hgvsp: ENST00000502316.1:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.114C>T
  hgvsp: ENST00000511600.1:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.114C>T
  hgvsp: ENST00000513284.1:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.114C>T
  hgvsp: ENST00000506706.1:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.114C>T
  hgvsp: ENST00000509258.1:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.114C>T
  hgvsp: ENST00000541204.1:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.333C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000507784
  gene symbol: RNF4
  hgvsc: ENST00000507784.1:n.393C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.260C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.267-3548C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.114C>T
  hgvsp: ENST00000314289.8:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.114C>T
  hgvsp: ENST00000511859.1:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13521
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu38Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

4-2498839-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2498839
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2498839
    reference: chr 4
allele count: 20
allele frequency: 2.970532319391635e-4
allele num: 67328
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.115G>A
  hgvsp: ENSP00000446369.1:p.Val39Met
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422619
  ensembl transcript: ENST00000513450
  gene symbol: RNF4
  hgvsc: ENST00000513450.1:c.115G>A
  hgvsp: ENSP00000422619.1:p.Val39Met
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.115G>A
  hgvsp: ENSP00000424076.1:p.Val39Met
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000507784
  gene symbol: RNF4
  hgvsc: ENST00000507784.1:n.394G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.115G>A
  hgvsp: ENSP00000422500.1:p.Val39Met
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.267-3547G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.115G>A
  hgvsp: ENSP00000423100.1:p.Val39Met
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.115G>A
  hgvsp: ENSP00000425724.1:p.Val39Met
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.115G>A
  hgvsp: ENSP00000422728.1:p.Val39Met
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.261G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.115G>A
  hgvsp: ENSP00000426615.1:p.Val39Met
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.115G>A
  hgvsp: ENSP00000425667.1:p.Val39Met
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.115G>A
  hgvsp: ENSP00000422938.1:p.Val39Met
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.115G>A
  hgvsp: ENSP00000426503.1:p.Val39Met
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.115G>A
  hgvsp: ENSP00000315212.8:p.Val39Met
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.334G>A
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val39Met
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

4-2498875-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2498875
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2498875
    reference: chr 4
allele count: 3
allele frequency: 5.911330049261084e-5
allele num: 50750
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.267-3511G>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.124+27G>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.124+27G>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.124+27G>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000507784
  gene symbol: RNF4
  hgvsc: ENST00000507784.1:n.430G>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+27G>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422619
  ensembl transcript: ENST00000513450
  gene symbol: RNF4
  hgvsc: ENST00000513450.1:c.124+27G>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.343+27G>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.124+27G>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.124+27G>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.270+27G>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.124+27G>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.124+27G>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.124+27G>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.124+27G>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.124+27G>C
  variant of: http://identifiers.org/hgnc/10067
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4269
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13514
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11327
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

4-2498880-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2498880
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2498880
    reference: chr 4
allele count: 2
allele frequency: 4.257493188010899e-5
allele num: 46976
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000507784
  gene symbol: RNF4
  hgvsc: ENST00000507784.1:n.435G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.124+32G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.124+32G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.343+32G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.124+32G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.124+32G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.270+32G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.124+32G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.124+32G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.124+32G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.124+32G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422619
  ensembl transcript: ENST00000513450
  gene symbol: RNF4
  hgvsc: ENST00000513450.1:c.124+32G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.124+32G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+32G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.124+32G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.267-3506G>A
  variant of: http://identifiers.org/hgnc/10067
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23374
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12740
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

4-2498881-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2498881
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2498881
    reference: chr 4
allele count: 2
allele frequency: 4.239983040067839e-5
allele num: 47170
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422619
  ensembl transcript: ENST00000513450
  gene symbol: RNF4
  hgvsc: ENST00000513450.1:c.124+33T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.343+33T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000507784
  gene symbol: RNF4
  hgvsc: ENST00000507784.1:n.436T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.124+33T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.124+33T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+33T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.124+33T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.267-3505T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.124+33T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.270+33T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.124+33T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.124+33T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.124+33T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.124+33T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.124+33T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.124+33T>C
  variant of: http://identifiers.org/hgnc/10067
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23432
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3078
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

4-2498885-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2498885
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2498885
    reference: chr 4
allele count: 3
allele frequency: 6.68359844940516e-5
allele num: 44886
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.124+37A>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000507784
  gene symbol: RNF4
  hgvsc: ENST00000507784.1:n.440A>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.124+37A>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.343+37A>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.124+37A>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.124+37A>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.124+37A>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.124+37A>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.270+37A>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.124+37A>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.267-3501A>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422619
  ensembl transcript: ENST00000513450
  gene symbol: RNF4
  hgvsc: ENST00000513450.1:c.124+37A>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.124+37A>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.124+37A>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.124+37A>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+37A>T
  variant of: http://identifiers.org/hgnc/10067
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13195
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11071
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

4-2498888-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2498888
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2498888
    reference: chr 4
allele count: 63
allele frequency: 1.450743794040437e-3
allele num: 43426
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.124+40G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000507784
  gene symbol: RNF4
  hgvsc: ENST00000507784.1:n.443G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422619
  ensembl transcript: ENST00000513450
  gene symbol: RNF4
  hgvsc: ENST00000513450.1:c.124+40G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.124+40G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+40G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.124+40G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.124+40G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.124+40G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.267-3498G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.124+40G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.343+40G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.270+40G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.124+40G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.124+40G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.124+40G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.124+40G>A
  variant of: http://identifiers.org/hgnc/10067
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13273
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24626
  bin: 7.5e0
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2977
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10415
  bin: 1.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

4-2498889-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2498889
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2498889
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 42932
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.270+41T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.124+41T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.124+41T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.267-3497T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.343+41T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.124+41T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.124+41T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000507784
  gene symbol: RNF4
  hgvsc: ENST00000507784.1:n.444T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.124+41T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.124+41T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.124+41T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.124+41T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.124+41T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422619
  ensembl transcript: ENST00000513450
  gene symbol: RNF4
  hgvsc: ENST00000513450.1:c.124+41T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+41T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.124+41T>C
  variant of: http://identifiers.org/hgnc/10067
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10218
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3673
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24801
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13301
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

4-2498890-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2498890
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2498890
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 42312
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.124+42G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.124+42G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422619
  ensembl transcript: ENST00000513450
  gene symbol: RNF4
  hgvsc: ENST00000513450.1:c.124+42G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.124+42G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.124+42G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.124+42G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.124+42G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.270+42G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.124+42G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.124+42G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+42G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.343+42G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.124+42G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.124+42G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.267-3496G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000507784
  gene symbol: RNF4
  hgvsc: ENST00000507784.1:n.445G>A
  variant of: http://identifiers.org/hgnc/10067
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25006
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3662
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD

4-2498893-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2498893
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2498893
    reference: chr 4
allele count: 1
allele frequency: 2.425300737291424e-5
allele num: 41232
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.270+45G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.124+45G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.124+45G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.124+45G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.124+45G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.124+45G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.267-3493G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+45G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.124+45G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000507784
  gene symbol: RNF4
  hgvsc: ENST00000507784.1:n.448G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.124+45G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.124+45G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.343+45G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422619
  ensembl transcript: ENST00000513450
  gene symbol: RNF4
  hgvsc: ENST00000513450.1:c.124+45G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.124+45G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.124+45G>A
  variant of: http://identifiers.org/hgnc/10067
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25469
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13360
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9486
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

4-2498895-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2498895
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2498895
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 40584
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.124+47G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.124+47G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.343+47G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000507784
  gene symbol: RNF4
  hgvsc: ENST00000507784.1:n.450G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+47G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.124+47G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.124+47G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422619
  ensembl transcript: ENST00000513450
  gene symbol: RNF4
  hgvsc: ENST00000513450.1:c.124+47G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.270+47G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.124+47G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.124+47G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.124+47G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.267-3491G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.124+47G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.124+47G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.124+47G>A
  variant of: http://identifiers.org/hgnc/10067
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13374
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25685
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum

4-2501015-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2501015
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2501015
    reference: chr 4
allele count: 1
allele frequency: 9.788566953797964e-5
allele num: 10216
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.125-1371T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.344-1371T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.125-1371T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.125-1371T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.125-1371T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.125-1371T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.271-1371T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.125-1371T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.125-1371T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.125-49T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.125-1371T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422619
  ensembl transcript: ENST00000513450
  gene symbol: RNF4
  hgvsc: ENST00000513450.1:c.125-1371T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+2167T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.267-1371T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.125-1371T>C
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

4-2501019-GTTGT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2501019
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2501015
    reference: chr 4
allele count: 1
allele frequency: 9.924573243350536e-5
allele num: 10076
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.125-1356_125-1353delGTTT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.125-1356_125-1353delGTTT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.267-1356_267-1353delGTTT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.125-1356_125-1353delGTTT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.344-1356_344-1353delGTTT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.125-1356_125-1353delGTTT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.125-34_125-31delGTTT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+2182_124+2185delGTTT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.125-1356_125-1353delGTTT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.125-1356_125-1353delGTTT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422619
  ensembl transcript: ENST00000513450
  gene symbol: RNF4
  hgvsc: ENST00000513450.1:c.125-1356_125-1353delGTTT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.125-1356_125-1353delGTTT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.271-1356_271-1353delGTTT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.125-1356_125-1353delGTTT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.125-1356_125-1353delGTTT
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: GTTGT
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

4-2501035-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2501035
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2501035
    reference: chr 4
allele count: 11
allele frequency: 1.096272672912099e-3
allele num: 10034
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.125-1351T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.125-1351T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422619
  ensembl transcript: ENST00000513450
  gene symbol: RNF4
  hgvsc: ENST00000513450.1:c.125-1351T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.125-1351T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.125-1351T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.344-1351T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.125-1351T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.125-1351T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.267-1351T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.125-1351T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.125-29T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.125-1351T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.271-1351T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+2187T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.125-1351T>C
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum

4-2501052-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2501052
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2501052
    reference: chr 4
allele count: 4
allele frequency: 4.16406412658755e-4
allele num: 9606
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.344-1334C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.125-1334C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+2204C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.271-1334C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.125-1334C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.125-1334C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.125-1334C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.125-1334C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.125-1334C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.125-1334C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.125-1334C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.267-1334C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422619
  ensembl transcript: ENST00000513450
  gene symbol: RNF4
  hgvsc: ENST00000513450.1:c.125-1334C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.125-12C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.125-1334C>T
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

4-2501070-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2501070
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2501070
    reference: chr 4
allele count: 2
allele frequency: 2.218278615794144e-4
allele num: 9016
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.125-1316G>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.125-1316G>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.267-1316G>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.125-1316G>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.125-1316G>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.125-1316G>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.125-1316G>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.131G>T
  hgvsp: ENSP00000422938.1:p.Gly44Val
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422619
  ensembl transcript: ENST00000513450
  gene symbol: RNF4
  hgvsc: ENST00000513450.1:c.125-1316G>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.271-1316G>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.344-1316G>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.125-1316G>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.125-1316G>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+2222G>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.125-1316G>T
  variant of: http://identifiers.org/hgnc/10067
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly44Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

4-2501086-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2501086
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2501086
    reference: chr 4
allele count: 2
allele frequency: 2.357378595002357e-4
allele num: 8484
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+2238T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.267-1300T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.125-1300T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.125-1300T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.125-1300T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.125-1300T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.125-1300T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.125-1300T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.271-1300T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422619
  ensembl transcript: ENST00000513450
  gene symbol: RNF4
  hgvsc: ENST00000513450.1:c.125-1300T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.*3T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.125-1300T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.125-1300T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.344-1300T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.125-1300T>C
  variant of: http://identifiers.org/hgnc/10067
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ

4-2501095-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2501095
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2501094
    reference: chr 4
allele count: 1
allele frequency: 1.249375312343828e-4
allele num: 8004
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.125-1287delG
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.271-1287delG
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.125-1287delG
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.125-1287delG
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.125-1287delG
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.*16delG
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.344-1287delG
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.267-1287delG
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.125-1287delG
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422619
  ensembl transcript: ENST00000513450
  gene symbol: RNF4
  hgvsc: ENST00000513450.1:c.125-1287delG
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.125-1287delG
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+2251delG
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.125-1287delG
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.125-1287delG
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.125-1287delG
  variant of: http://identifiers.org/hgnc/10067
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: CG
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

4-2501104-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2501104
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2501104
    reference: chr 4
allele count: 1
allele frequency: 1.307531380753138e-4
allele num: 7648
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.271-1282A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.125-1282A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.125-1282A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.267-1282A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+2256A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.125-1282A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.125-1282A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.*21A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.125-1282A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.125-1282A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.125-1282A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.344-1282A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422619
  ensembl transcript: ENST00000513450
  gene symbol: RNF4
  hgvsc: ENST00000513450.1:c.125-1282A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.125-1282A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.125-1282A>G
  variant of: http://identifiers.org/hgnc/10067
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

4-2501108-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2501108
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2501108
    reference: chr 4
allele count: 4
allele frequency: 5.449591280653951e-4
allele num: 7340
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.125-1278A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+2260A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.344-1278A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.125-1278A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.271-1278A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.125-1278A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.267-1278A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.125-1278A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.*25A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422619
  ensembl transcript: ENST00000513450
  gene symbol: RNF4
  hgvsc: ENST00000513450.1:c.125-1278A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.125-1278A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.125-1278A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.125-1278A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.125-1278A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.125-1278A>G
  variant of: http://identifiers.org/hgnc/10067
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2523
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 1
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

4-2501110-TCTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2501110
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2501107
    reference: chr 4
allele count: 1
allele frequency: 1.419647927314026e-4
allele num: 7044
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.125-1273_125-1271delCCT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.125-1273_125-1271delCCT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.267-1273_267-1271delCCT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.125-1273_125-1271delCCT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.125-1273_125-1271delCCT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.*30_*32delCCT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.125-1273_125-1271delCCT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422619
  ensembl transcript: ENST00000513450
  gene symbol: RNF4
  hgvsc: ENST00000513450.1:c.125-1273_125-1271delCCT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.125-1273_125-1271delCCT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.271-1273_271-1271delCCT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.125-1273_125-1271delCCT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.125-1273_125-1271delCCT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+2265_124+2267delCCT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.125-1273_125-1271delCCT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.344-1273_344-1271delCCT
  variant of: http://identifiers.org/hgnc/10067
canonical: false
consequence: 3' UTR
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: TCTC
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

4-2502346-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2502346
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2502346
    reference: chr 4
allele count: 1
allele frequency: 9.729898030668638e-6
allele num: 102776
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+3498C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.344-40C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.267-40C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.125-40C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.125-40C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.125-40C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.*64-40C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.125-40C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.125-40C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422619
  ensembl transcript: ENST00000513450
  gene symbol: RNF4
  hgvsc: ENST00000513450.1:c.125-40C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.125-40C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.271-40C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.125-40C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.125-40C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.125-40C>T
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17048
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8225
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3579
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

4-2502346-CTCTTAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2502346
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2502340
    reference: chr 4
allele count: 47
allele frequency: 4.57305207441426e-4
allele num: 102776
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.125-32_125-27delCTTAAT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.*64-32_*64-27delCTTAAT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.125-32_125-27delCTTAAT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422619
  ensembl transcript: ENST00000513450
  gene symbol: RNF4
  hgvsc: ENST00000513450.1:c.125-32_125-27delCTTAAT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.125-32_125-27delCTTAAT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.267-32_267-27delCTTAAT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.125-32_125-27delCTTAAT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.271-32_271-27delCTTAAT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.125-32_125-27delCTTAAT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.125-32_125-27delCTTAAT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.125-32_125-27delCTTAAT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.125-32_125-27delCTTAAT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.125-32_125-27delCTTAAT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.344-32_344-27delCTTAAT
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7846
  bin: 1.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 12385
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 8225
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 17048
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3579
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: CTCTTAA
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

4-2502347-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2502347
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2502347
    reference: chr 4
allele count: 1
allele frequency: 9.714396735962696e-6
allele num: 102940
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.125-39T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.271-39T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422619
  ensembl transcript: ENST00000513450
  gene symbol: RNF4
  hgvsc: ENST00000513450.1:c.125-39T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.125-39T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.125-39T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.344-39T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.125-39T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.125-39T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.125-39T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.125-39T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.267-39T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+3499T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.125-39T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.*64-39T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.125-39T>C
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7411
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3036
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3628
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16829
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

4-2502359-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2502359
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2502359
    reference: chr 4
allele count: 5
allele frequency: 4.744643297716878e-5
allele num: 105382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.125-27T>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.125-27T>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.*64-27T>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.125-27T>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.271-27T>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.125-27T>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.344-27T>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.125-27T>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.125-27T>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.267-27T>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.125-27T>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.125-27T>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422619
  ensembl transcript: ENST00000513450
  gene symbol: RNF4
  hgvsc: ENST00000513450.1:c.125-27T>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.125-27T>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+3511T>A
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4608
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7433
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25224
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD

4-2502361-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2502361
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2502361
    reference: chr 4
allele count: 4
allele frequency: 3.767613593549846e-5
allele num: 106168
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.125-25C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.267-25C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.125-25C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.271-25C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.125-25C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.125-25C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.125-25C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422619
  ensembl transcript: ENST00000513450
  gene symbol: RNF4
  hgvsc: ENST00000513450.1:c.125-25C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.125-25C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.125-25C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.125-25C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.*64-25C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.344-25C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+3513C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.125-25C>T
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6992
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8374
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27135
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ

4-2502364-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2502364
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2502364
    reference: chr 4
allele count: 1
allele frequency: 9.270761871210575e-6
allele num: 107866
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.271-22G>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.125-22G>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.344-22G>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.125-22G>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.*64-22G>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.125-22G>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.125-22G>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.125-22G>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.125-22G>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422619
  ensembl transcript: ENST00000513450
  gene symbol: RNF4
  hgvsc: ENST00000513450.1:c.125-22G>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+3516G>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.125-22G>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.125-22G>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.125-22G>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.267-22G>C
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6241
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29985
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6405
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD

4-2502364-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2502364
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2502364
    reference: chr 4
allele count: 1
allele frequency: 9.270761871210575e-6
allele num: 107866
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.125-22G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422619
  ensembl transcript: ENST00000513450
  gene symbol: RNF4
  hgvsc: ENST00000513450.1:c.125-22G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.125-22G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.267-22G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.344-22G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.125-22G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.*64-22G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.125-22G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.125-22G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+3516G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.271-22G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.125-22G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.125-22G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.125-22G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.125-22G>A
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29985
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6405
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

4-2502376-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2502376
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2502376
    reference: chr 4
allele count: 2
allele frequency: 1.762238748105593e-5
allele num: 113492
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.125-10T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.125-10T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.344-10T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.*64-10T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.267-10T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.125-10T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.125-10T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422619
  ensembl transcript: ENST00000513450
  gene symbol: RNF4
  hgvsc: ENST00000513450.1:c.125-10T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.125-10T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.125-10T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.125-10T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+3528T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.271-10T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.125-10T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.125-10T>C
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6507
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3037
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2433
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

4-2502382-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2502382
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2502382
    reference: chr 4
allele count: 14
allele frequency: 1.20870961614836e-4
allele num: 115826
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.125-4G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.*64-4G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.125-4G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.125-4G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.125-4G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.344-4G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.125-4G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+3534G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422619
  ensembl transcript: ENST00000513450
  gene symbol: RNF4
  hgvsc: ENST00000513450.1:c.125-4G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.271-4G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.267-4G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.125-4G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.125-4G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.125-4G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.125-4G>A
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: c.125-4G>A
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

4-2502388-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2502388
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2502388
    reference: chr 4
allele count: 1
allele frequency: 8.501666326600013e-6
allele num: 117624
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422619
  ensembl transcript: ENST00000513450
  gene symbol: RNF4
  hgvsc: ENST00000513450.1:c.127G>A
  hgvsp: ENSP00000422619.1:p.Gly43Arg
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.127G>A
  hgvsp: ENSP00000422500.1:p.Gly43Arg
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.*66G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.346G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.127G>A
  hgvsp: ENSP00000422728.1:p.Gly43Arg
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.127G>A
  hgvsp: ENSP00000426615.1:p.Gly43Arg
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.127G>A
  hgvsp: ENSP00000424076.1:p.Gly43Arg
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+3540G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.127G>A
  hgvsp: ENSP00000425667.1:p.Gly43Arg
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.127G>A
  hgvsp: ENSP00000446369.1:p.Gly43Arg
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.127G>A
  hgvsp: ENSP00000423100.1:p.Gly43Arg
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.127G>A
  hgvsp: ENSP00000315212.8:p.Gly43Arg
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.269G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.273G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.127G>A
  hgvsp: ENSP00000426503.1:p.Gly43Arg
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly43Arg
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum

4-2502412-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2502412
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2502412
    reference: chr 4
allele count: 13
allele frequency: 1.09049424554575e-4
allele num: 119212
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.293T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.151T>C
  hgvsp: ENSP00000425667.1:p.Cys51Arg
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.151T>C
  hgvsp: ENSP00000422728.1:p.Cys51Arg
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.*90T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.151T>C
  hgvsp: ENSP00000315212.8:p.Cys51Arg
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+3564T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.151T>C
  hgvsp: ENSP00000424076.1:p.Cys51Arg
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.151T>C
  hgvsp: ENSP00000423100.1:p.Cys51Arg
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.151T>C
  hgvsp: ENSP00000422500.1:p.Cys51Arg
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.151T>C
  hgvsp: ENSP00000426615.1:p.Cys51Arg
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.297T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.151T>C
  hgvsp: ENSP00000446369.1:p.Cys51Arg
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.151T>C
  hgvsp: ENSP00000426503.1:p.Cys51Arg
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422619
  ensembl transcript: ENST00000513450
  gene symbol: RNF4
  hgvsc: ENST00000513450.1:c.151T>C
  hgvsp: ENSP00000422619.1:p.Cys51Arg
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.370T>C
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8716
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys51Arg
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

4-2502414-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2502414
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2502414
    reference: chr 4
allele count: 1
allele frequency: 8.379420144126027e-6
allele num: 119340
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.153T>C
  hgvsp: ENST00000511859.1:c.153T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.295T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.153T>C
  hgvsp: ENST00000506706.1:c.153T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.*92T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.153T>C
  hgvsp: ENST00000509258.1:c.153T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+3566T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.153T>C
  hgvsp: ENST00000314289.8:c.153T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.372T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.153T>C
  hgvsp: ENST00000511600.1:c.153T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.299T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.153T>C
  hgvsp: ENST00000502316.1:c.153T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.153T>C
  hgvsp: ENST00000541204.1:c.153T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.153T>C
  hgvsp: ENST00000504224.1:c.153T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.153T>C
  hgvsp: ENST00000507247.1:c.153T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422619
  ensembl transcript: ENST00000513450
  gene symbol: RNF4
  hgvsc: ENST00000513450.1:c.153T>C
  hgvsp: ENST00000513450.1:c.153T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys51Cys
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

4-2502422-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2502422
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2502422
    reference: chr 4
allele count: 1
allele frequency: 8.376893177858196e-6
allele num: 119376
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.161T>C
  hgvsp: ENSP00000426615.1:p.Leu54Ser
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+3574T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.161T>C
  hgvsp: ENSP00000424076.1:p.Leu54Ser
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.161T>C
  hgvsp: ENSP00000446369.1:p.Leu54Ser
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.161T>C
  hgvsp: ENSP00000315212.8:p.Leu54Ser
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.307T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422619
  ensembl transcript: ENST00000513450
  gene symbol: RNF4
  hgvsc: ENST00000513450.1:c.161T>C
  hgvsp: ENSP00000422619.1:p.Leu54Ser
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.303T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.161T>C
  hgvsp: ENSP00000422500.1:p.Leu54Ser
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.161T>C
  hgvsp: ENSP00000425667.1:p.Leu54Ser
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.161T>C
  hgvsp: ENSP00000422728.1:p.Leu54Ser
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.161T>C
  hgvsp: ENSP00000423100.1:p.Leu54Ser
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.*100T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.380T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.161T>C
  hgvsp: ENSP00000426503.1:p.Leu54Ser
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu54Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

4-2502427-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2502427
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2502427
    reference: chr 4
allele count: 1
allele frequency: 8.383072899201931e-6
allele num: 119288
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.166C>T
  hgvsp: ENSP00000422500.1:p.Pro56Ser
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.166C>T
  hgvsp: ENSP00000423100.1:p.Pro56Ser
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.312C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.166C>T
  hgvsp: ENSP00000446369.1:p.Pro56Ser
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.*105C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.166C>T
  hgvsp: ENSP00000426503.1:p.Pro56Ser
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.166C>T
  hgvsp: ENSP00000424076.1:p.Pro56Ser
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.166C>T
  hgvsp: ENSP00000315212.8:p.Pro56Ser
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.166C>T
  hgvsp: ENSP00000426615.1:p.Pro56Ser
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+3579C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.166C>T
  hgvsp: ENSP00000422728.1:p.Pro56Ser
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.166C>T
  hgvsp: ENSP00000425667.1:p.Pro56Ser
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.385C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.308C>T
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38419
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro56Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

4-2502435-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2502435
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2502435
    reference: chr 4
allele count: 1
allele frequency: 8.406610958858046e-6
allele num: 118954
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.174G>A
  hgvsp: ENST00000541204.1:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.*113G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.174G>A
  hgvsp: ENST00000511600.1:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.174G>A
  hgvsp: ENST00000507247.1:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.174G>A
  hgvsp: ENST00000502316.1:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.174G>A
  hgvsp: ENST00000314289.8:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.174G>A
  hgvsp: ENST00000509258.1:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+3587G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.320G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.174G>A
  hgvsp: ENST00000511859.1:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.174G>A
  hgvsp: ENST00000504224.1:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.316G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.174G>A
  hgvsp: ENST00000506706.1:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.393G>A
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37734
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9202
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val58Val
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

4-2502435-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2502435
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2502435
    reference: chr 4
allele count: 1
allele frequency: 8.406610958858046e-6
allele num: 118954
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.*113G>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.174G>T
  hgvsp: ENST00000504224.1:c.174G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.174G>T
  hgvsp: ENST00000511600.1:c.174G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.174G>T
  hgvsp: ENST00000509258.1:c.174G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.174G>T
  hgvsp: ENST00000502316.1:c.174G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.174G>T
  hgvsp: ENST00000314289.8:c.174G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.174G>T
  hgvsp: ENST00000511859.1:c.174G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+3587G>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.393G>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.316G>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.320G>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.174G>T
  hgvsp: ENST00000541204.1:c.174G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.174G>T
  hgvsp: ENST00000507247.1:c.174G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.174G>T
  hgvsp: ENST00000506706.1:c.174G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3037
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9202
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val58Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

4-2502441-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2502441
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2502441
    reference: chr 4
allele count: 2
allele frequency: 1.686226898691488e-5
allele num: 118608
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.322T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.180T>C
  hgvsp: ENST00000511600.1:c.180T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.180T>C
  hgvsp: ENST00000509258.1:c.180T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.399T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.*119T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.326T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.180T>C
  hgvsp: ENST00000504224.1:c.180T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.180T>C
  hgvsp: ENST00000506706.1:c.180T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.180T>C
  hgvsp: ENST00000502316.1:c.180T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.180T>C
  hgvsp: ENST00000541204.1:c.180T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.180T>C
  hgvsp: ENST00000507247.1:c.180T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+3593T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.180T>C
  hgvsp: ENST00000511859.1:c.180T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.180T>C
  hgvsp: ENST00000314289.8:c.180T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9264
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp60Asp
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP

4-2502442-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2502442
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2502442
    reference: chr 4
allele count: 1
allele frequency: 8.438960995122281e-6
allele num: 118498
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425667
  ensembl transcript: ENST00000504224
  gene symbol: RNF4
  hgvsc: ENST00000504224.1:c.181C>G
  hgvsp: ENSP00000425667.1:p.Leu61Val
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.181C>G
  hgvsp: ENSP00000423100.1:p.Leu61Val
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.181C>G
  hgvsp: ENSP00000315212.8:p.Leu61Val
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.323C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.181C>G
  hgvsp: ENSP00000422500.1:p.Leu61Val
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.181C>G
  hgvsp: ENSP00000446369.1:p.Leu61Val
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.181C>G
  hgvsp: ENSP00000426615.1:p.Leu61Val
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+3594C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.327C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.181C>G
  hgvsp: ENSP00000424076.1:p.Leu61Val
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.400C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.181C>G
  hgvsp: ENSP00000422728.1:p.Leu61Val
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.181C>G
  hgvsp: ENSP00000426503.1:p.Leu61Val
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.*120C>G
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2422
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu61Val
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP

4-2502473-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2502473
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2502473
    reference: chr 4
allele count: 1
allele frequency: 8.907257633519791e-6
allele num: 112268
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.204+8T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.204+8T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.210+2T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.423+8T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.350+8T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422938
  ensembl transcript: ENST00000513578
  gene symbol: RNF4
  hgvsc: ENST00000513578.1:c.*151T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.204+8T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.204+8T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.204+8T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.346+8T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.204+8T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+3625T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.204+8T>C
  variant of: http://identifiers.org/hgnc/10067
canonical: false
consequence: splice donor
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27598
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3037
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.210+2T>C
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum

4-2502478-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2502478
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2502478
    reference: chr 4
allele count: 1
allele frequency: 9.081827263645446e-6
allele num: 110110
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+3630G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.204+13G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.210+7G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.204+13G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.350+13G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.204+13G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.346+13G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.204+13G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.204+13G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.423+13G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.204+13G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.204+13G>A
  variant of: http://identifiers.org/hgnc/10067
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7737
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3037
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10043
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.210+7G>A
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

4-2502481-TGA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2502481
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2502479
    reference: chr 4
allele count: 1
allele frequency: 9.230542017427263e-6
allele num: 108336
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.204+20_204+21delAG
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.204+20_204+21delAG
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.204+20_204+21delAG
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.423+20_423+21delAG
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.210+14_210+15delAG
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.350+20_350+21delAG
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.204+20_204+21delAG
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.346+20_346+21delAG
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+3637_124+3638delAG
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.204+20_204+21delAG
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.204+20_204+21delAG
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.204+20_204+21delAG
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3037
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5949
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3375
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7096
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: TGA
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

4-2502489-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2502489
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2502489
    reference: chr 4
allele count: 1
allele frequency: 9.535069987413708e-6
allele num: 104876
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.204+24G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.346+24G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+3641G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.204+24G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.204+24G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.204+24G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.350+24G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.423+24G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.204+24G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.204+24G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.204+24G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.210+18G>A
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3037
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5728
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4717
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16696
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14669
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

4-2502497-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2502497
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2502497
    reference: chr 4
allele count: 1
allele frequency: 9.77230528681716e-6
allele num: 102330
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.204+32C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+3649C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.210+26C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.423+32C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.350+32C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.204+32C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.204+32C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.204+32C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.204+32C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.204+32C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.204+32C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.346+32C>G
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6031
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8090
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20097
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP

4-2502504-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2502504
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2502504
    reference: chr 4
allele count: 266
allele frequency: 2.664903422297026e-3
allele num: 99816
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.210+33A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.204+39A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+3656A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.204+39A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.350+39A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.204+39A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.346+39A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.204+39A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.204+39A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.423+39A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.204+39A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.204+39A>G
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7748
  bin: 1.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 6704
  bin: 2.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 21811
  bin: 1.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8818
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3458
  bin: 2.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3042
  bin: 9.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 1
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

4-2502505-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2502505
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2502505
    reference: chr 4
allele count: 1
allele frequency: 1.012576196358776e-5
allele num: 98758
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.350+40T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.204+40T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.204+40T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.204+40T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+3657T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.346+40T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.204+40T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.423+40T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.204+40T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.204+40T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.210+34T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.204+40T>C
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9056
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21947
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8491
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

4-2502518-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2502518
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2502518
    reference: chr 4
allele count: 1901
allele frequency: 2.065181966322651e-2
allele num: 92050
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.210+47A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+3670A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.204+53A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.204+53A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.204+53A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.423+53A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.204+53A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.204+53A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.204+53A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.346+53A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.204+53A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.350+53A>G
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10100
  bin: 1.75e1
  variant carriers: 525
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 5.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 2.75e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 20608
  bin: 1.25e1
  variant carriers: 659
genotype depth: GenotypeDepth
  all individuals: 3442
  bin: 2.25e1
  variant carriers: 205
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 3.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 4.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 11746
  bin: 7.5e0
  variant carriers: 260
genotype depth: GenotypeDepth
  all individuals: 3056
  bin: 9.75e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 2.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 4.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
num of homozygotes: 29
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

4-2502522-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2502522
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2502522
    reference: chr 4
allele count: 1
allele frequency: 1.118393092804259e-5
allele num: 89414
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.423+57C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.204+57C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.204+57C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.204+57C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.204+57C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.210+51C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.350+57C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.346+57C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.204+57C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.204+57C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.204+57C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+3674C>G
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19981
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9754
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12875
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3049
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

4-2502525-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2502525
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2502525
    reference: chr 4
allele count: 2
allele frequency: 2.317873119625432e-5
allele num: 86286
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.204+60G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.350+60G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.204+60G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.423+60G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.204+60G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+3677G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.346+60G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.204+60G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.210+54G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.204+60G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.204+60G>A
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.204+60G>A
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3686
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13781
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19208
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9581
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3049
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

4-2502529-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2502529
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2502529
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 86332
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.204+64C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.204+64C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.204+64C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.204+64C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.204+64C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.350+64C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.210+58C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.204+64C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.204+64C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.124+3681C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.423+64C>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.346+64C>G
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 13846
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9439
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3701
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3049
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD

4-2513642-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2513642
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2513642
    reference: chr 4
allele count: 1
allele frequency: 1.775757360514259e-5
allele num: 56314
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.424-41A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.211-472A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.205-41A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.205-41A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.125-41A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.205-41A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.205-41A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.351-41A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.347-41A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.205-41A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.205-41A>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.205-41A>G
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26469
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12611
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5369
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3654
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP

4-2513644-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2513644
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2513644
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 56666
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.205-39T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.205-39T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.351-39T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.205-39T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.205-39T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.205-39T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.211-470T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.424-39T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.205-39T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.347-39T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.125-39T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.205-39T>C
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26674
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12512
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5178
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

4-2513648-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2513648
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2513648
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 56932
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.205-35T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.205-35T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.347-35T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.205-35T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.211-466T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.205-35T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.351-35T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.205-35T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.205-35T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.424-35T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.205-35T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.125-35T>C
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27132
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4848
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3701
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD

4-2513652-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2513652
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2513652
    reference: chr 4
allele count: 1
allele frequency: 1.746907972887988e-5
allele num: 57244
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.351-31T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.347-31T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.205-31T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.205-31T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.211-462T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.125-31T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.205-31T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.424-31T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.205-31T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.205-31T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.205-31T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.205-31T>C
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3746
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5821
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3982
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11824
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27637
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

4-2513655-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2513655
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2513653
    reference: chr 4
allele count: 2
allele frequency: 3.485292067475255e-5
allele num: 57384
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.205-25_205-24delTT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.205-25_205-24delTT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.205-25_205-24delTT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.211-456_211-455delTT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.351-25_351-24delTT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.205-25_205-24delTT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.424-25_424-24delTT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.205-25_205-24delTT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.347-25_347-24delTT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.205-25_205-24delTT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.125-25_125-24delTT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.205-25_205-24delTT
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 3813
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27827
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3536
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11408
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6629
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: CTT
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ

4-2513656-TTTTG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2513656
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2513652
    reference: chr 4
allele count: 2
allele frequency: 3.46812790455712e-5
allele num: 57668
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.205-23_205-20delGTTT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.205-23_205-20delGTTT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.351-23_351-20delGTTT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.205-23_205-20delGTTT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.125-23_125-20delGTTT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.347-23_347-20delGTTT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.205-23_205-20delGTTT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.211-454_211-451delGTTT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.205-23_205-20delGTTT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.205-23_205-20delGTTT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.424-23_424-20delGTTT
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.205-23_205-20delGTTT
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27964
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3818
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
reference allele: TTTTG
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

4-2513659-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2513659
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2513660
    reference: chr 4
allele count: 1
allele frequency: 1.725208750258781e-5
allele num: 57964
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.351-23dupG
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.205-23dupG
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.205-23dupG
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.347-23dupG
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.424-23dupG
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.205-23dupG
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.205-23dupG
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.205-23dupG
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.205-23dupG
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.211-454dupG
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.205-23dupG
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.125-23dupG
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3079
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10646
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7750
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

4-2513661-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2513661
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2513661
    reference: chr 4
allele count: 1
allele frequency: 1.719453901440902e-5
allele num: 58158
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.211-453T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.347-22T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.205-22T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.424-22T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.205-22T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.205-22T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.205-22T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.125-22T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.205-22T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.205-22T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.351-22T>C
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.205-22T>C
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10343
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

4-2513676-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2513676
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2513676
    reference: chr 4
allele count: 2
allele frequency: 3.265199503689675e-5
allele num: 61252
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.205-7T>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.351-7T>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.211-438T>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.205-7T>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.205-7T>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.424-7T>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.347-7T>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.205-7T>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.205-7T>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.125-7T>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.205-7T>G
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.205-7T>G
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28020
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4238
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8012
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.205-7T>G
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

4-2513691-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2513691
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2513691
    reference: chr 4
allele count: 1
allele frequency: 1.56631789988096e-5
allele num: 63844
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.432C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.213C>T
  hgvsp: ENST00000511859.1:c.213C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.213C>T
  hgvsp: ENST00000506706.1:c.213C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.359C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.213C>T
  hgvsp: ENST00000509258.1:c.213C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.213C>T
  hgvsp: ENST00000511600.1:c.213C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.*1C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.213C>T
  hgvsp: ENST00000502316.1:c.213C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.355C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.213C>T
  hgvsp: ENST00000507247.1:c.213C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.211-423C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.213C>T
  hgvsp: ENST00000314289.8:c.213C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10067
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4495
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7027
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26886
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.213C>T
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

4-2513704-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2513704
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 2513704
    reference: chr 4
allele count: 3
allele frequency: 4.760695696331091e-5
allele num: 63016
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426503
  ensembl transcript: ENST00000511600
  gene symbol: RNF4
  hgvsc: ENST00000511600.1:c.214+12C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000426615
  ensembl transcript: ENST00000511859
  gene symbol: RNF4
  hgvsc: ENST00000511859.1:c.214+12C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000509388
  gene symbol: RNF4
  hgvsc: ENST00000509388.1:n.360+12C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000511843
  gene symbol: RNF4
  hgvsc: ENST00000511843.1:n.433+12C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000423100
  ensembl transcript: ENST00000502316
  gene symbol: RNF4
  hgvsc: ENST00000502316.1:c.214+12C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000424076
  ensembl transcript: ENST00000506706
  gene symbol: RNF4
  hgvsc: ENST00000506706.1:c.214+12C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422728
  ensembl transcript: ENST00000507247
  gene symbol: RNF4
  hgvsc: ENST00000507247.1:c.214+12C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl transcript: ENST00000513643
  gene symbol: RNF4
  hgvsc: ENST00000513643.1:n.356+12C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000422500
  ensembl transcript: ENST00000509258
  gene symbol: RNF4
  hgvsc: ENST00000509258.1:c.226C>T
  hgvsp: ENSP00000422500.1:p.Arg76Cys
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000315212
  ensembl transcript: ENST00000314289
  gene symbol: RNF4
  hgvsc: ENST00000314289.8:c.214+12C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000446369
  ensembl transcript: ENST00000541204
  gene symbol: RNF4
  hgvsc: ENST00000541204.1:c.211-410C>T
  variant of: http://identifiers.org/hgnc/10067
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063978
  ensembl protein: ENSP00000425724
  ensembl transcript: ENST00000513284
  gene symbol: RNF4
  hgvsc: ENST00000513284.1:c.*2+12C>T
  variant of: http://identifiers.org/hgnc/10067
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12158
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8176
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4547
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg76Cys
num of homozygotes: 0
reference allele: C

GenotypeDepth
all individuals: 278
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4810
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 348
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 225
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 20693
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1703
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 365
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 21643
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 61
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 110
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 161
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 478
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 88
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 196
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 156
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 121
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2309
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 979
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22655
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25841
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1209
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1264
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1517
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.941747572815534e-4
allele num: 5150
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10668
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.316852787173903e-5
allele num: 43162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4970
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4270
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

FS
type: SiteQuality
SIO_000300: 1.617e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

QD
type: SiteQuality
SIO_000300: 7.1e0

DP
type: SiteQuality
SIO_000300: 1.040829e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 9.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.411e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 4754
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 196
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 348
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1662
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1032
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 156
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 278
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1172
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 17895
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 22599
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 61
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 366
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 88
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 121
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 110
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 161
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1365
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2307
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 27995
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1465
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20063
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1374
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.400960384153661e-5
allele num: 41650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4752
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4174
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

DP
type: SiteQuality
SIO_000300: 1.004297e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.43e0

QD
type: SiteQuality
SIO_000300: 1.33e1

VQSLOD
type: SiteQuality
SIO_000300: 6.0e-1

FS
type: SiteQuality
SIO_000300: 6.014e0

MQRankSum
type: SiteQuality
SIO_000300: 7.95e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.51e-1

GenotypeDepth
all individuals: 1621
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 110
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8685
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 365
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 22610
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 157
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 4768
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1037
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 470
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 348
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 88
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1174
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 278
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 196
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 224
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1364
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1463
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28095
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 712
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20362
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2306
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1381
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.400614557326676e-5
allele num: 41656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4178
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4748
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6346
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4884
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.18e-1

FS
type: SiteQuality
SIO_000300: 9.16e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -6.43e-1

DP
type: SiteQuality
SIO_000300: 1.004642e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

QD
type: SiteQuality
SIO_000300: 1.079e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

GenotypeDepth
all individuals: 364
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 23294
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 10043
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 121
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1745
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4542
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 278
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1560
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 224
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1032
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 161
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 196
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1678
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1574
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1351
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29574
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1658
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17967
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2307
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 304
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4682
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4092
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6220
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.691800736576855e-5
allele num: 10318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40346
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.91e-1

FS
type: SiteQuality
SIO_000300: 6.355e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.84e-1

DP
type: SiteQuality
SIO_000300: 9.72014e5

MQ
type: SiteQuality
SIO_000300: 5.911e1

VQSLOD
type: SiteQuality
SIO_000300: -1.26e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.457e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.69e-1

QD
type: SiteQuality
SIO_000300: 7.41e0

GenotypeDepth
all individuals: 23782
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 61
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1975
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 156
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1878
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11229
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 110
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 121
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1052
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 224
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 349
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 369
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1208
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30670
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2115
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1693
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 327
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1817
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15755
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2306
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10104
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6024
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38996
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.97e0

FS
type: SiteQuality
SIO_000300: 1.531e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.507e0

DP
type: SiteQuality
SIO_000300: 9.4401e5

MQRankSum
type: SiteQuality
SIO_000300: 4.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.51e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.53e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.27e-1

GenotypeDepth
all individuals: 23990
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 196
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 61
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12546
bin: 2.25e1
variant carriers: 4

GenotypeDepth
all individuals: 1946
bin: 1.75e1
variant carriers: 7

GenotypeDepth
all individuals: 88
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11907
bin: 1.25e1
variant carriers: 4

GenotypeDepth
all individuals: 161
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 110
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 472
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 348
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4075
bin: 2.75e1
variant carriers: 5

GenotypeDepth
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2325
bin: 9.75e1
variant carriers: 19

GenotypeQuality
all individuals: 334
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1162
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1935
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2440
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 869
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30886
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 550
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14023
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 196
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1778
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1133
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 3.90991554582421e-4
allele num: 38364
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5962
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3942
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9954
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 1.179801793298726e-3
allele num: 4238
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.588e0

FS
type: SiteQuality
SIO_000300: 1.261e0

VQSLOD
type: SiteQuality
SIO_000300: 9.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.04e-1

DP
type: SiteQuality
SIO_000300: 9.25724e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.9e-2

QD
type: SiteQuality
SIO_000300: 1.099e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

GenotypeDepth
all individuals: 61
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2064
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 347
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 224
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 156
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 110
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 23124
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 161
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 88
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2830
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2598
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24758
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11655
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3311
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5062
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2925
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1329
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2305
bin: 9.75e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.961849067112225e-5
allele num: 28728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2750
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3316
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2298
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.242152466367713e-3
allele num: 446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8328
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.01e-1

QD
type: SiteQuality
SIO_000300: 1.451e1

VQSLOD
type: SiteQuality
SIO_000300: 4.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.11e-1

FS
type: SiteQuality
SIO_000300: 3.066e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.07e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.22e-2

DP
type: SiteQuality
SIO_000300: 7.25186e5

GenotypeDepth
all individuals: 121
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 778
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12158
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 224
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 88
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3122
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 61
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 110
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 161
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4653
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2303
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3841
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 839
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3982
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20588
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2789
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13253
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3028
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1597
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 695
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1894
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.249687578105474e-4
allele num: 8002
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3170
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.764493299201928e-5
allele num: 26564
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.95947e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.52e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.32e0

QD
type: SiteQuality
SIO_000300: 1.693e1

GenotypeDepth
all individuals: 347
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 88
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12802
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 61
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1799
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12089
bin: 1.25e1
variant carriers: 2

GenotypeDepth
all individuals: 156
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 768
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 110
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 196
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13317
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21071
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2304
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 363
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2805
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3028
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4619
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3511
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1597
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 84
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4109
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 4.29553264604811e-4
allele num: 4656
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26668
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1918
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8012
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3178
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.495e-1

FS
type: SiteQuality
SIO_000300: 3.203e0

DP
type: SiteQuality
SIO_000300: 6.94845e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.46e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

QD
type: SiteQuality
SIO_000300: 6.9e0

GenotypeDepth
all individuals: 347
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 61
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3071
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 196
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24068
bin: 7.5e0
variant carriers: 4

GenotypeDepth
all individuals: 458
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 110
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1648
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 88
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13811
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1735
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2789
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3500
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2304
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3067
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4589
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5590
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 123
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 202
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18337
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 271
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25350
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 4.504504504504505e-4
allele num: 4440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3082
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 5.820721769499418e-4
allele num: 1718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2120
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7776
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.275e1

MQRankSum
type: SiteQuality
SIO_000300: 1.68e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.29e0

FS
type: SiteQuality
SIO_000300: 6.708e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.66e-2

DP
type: SiteQuality
SIO_000300: 6.78763e5

GenotypeDepth
all individuals: 3692
bin: 1.75e1
variant carriers: 9

GenotypeDepth
all individuals: 61
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 750
bin: 3.25e1
variant carriers: 3

GenotypeDepth
all individuals: 197
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 88
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 347
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 121
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 112
bin: 7.75e1
variant carriers: 2

GenotypeDepth
all individuals: 163
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 74
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 362
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 250
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 13904
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1780
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3081
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5431
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 9.25e1
variant carriers: 6

GenotypeQuality
all individuals: 2752
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 16607
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1109
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6127
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2361
bin: 9.75e1
variant carriers: 64

GenotypeQuality
all individuals: 127
bin: 8.75e1
variant carriers: 5

GenotypeQuality
all individuals: 663
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3180
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 636
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 7.25e1
variant carriers: 3

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 386
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 6.265664160401002e-4
allele num: 1596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 3.320053120849933e-4
allele num: 3012
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1970
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 4.631773969430292e-4
allele num: 4318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 59
allele frequency: 2.406591613640072e-3
allele num: 24516
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.81e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.523e0

MQRankSum
type: SiteQuality
SIO_000300: 2.93e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.6e0

QD
type: SiteQuality
SIO_000300: 1.352e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 6.7058e5

ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-2

GenotypeDepth
all individuals: 361
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 741
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 224
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2995
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 454
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 61
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 276
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 110
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13872
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2755
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1800
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5840
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16024
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6298
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3070
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1193
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3076
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2306
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1926
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24202
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3000
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

DP
type: SiteQuality
SIO_000300: 6.68445e5

QD
type: SiteQuality
SIO_000300: 1.55e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.77e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 276
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13315
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3021
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9995
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 61
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 743
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 157
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 347
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 457
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 198
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 752
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1424
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2742
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1792
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6425
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15443
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6115
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3050
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13880
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2990
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2306
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2978
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 376
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.66936e5

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.88e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.720000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -1.096e0

GenotypeDepth
all individuals: 3088
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 198
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 224
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 360
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3597
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 347
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 110
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 455
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 61
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13645
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7465
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1666
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2666
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6761
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13709
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2731
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3041
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2307
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 273
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1819
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1426
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1766
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4158
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2930
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.308859014133058e-5
allele num: 23208
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 376
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7368
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.73e0

DP
type: SiteQuality
SIO_000300: 6.62813e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.92e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.422e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.067e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.867e0

GenotypeDepth
all individuals: 224
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 123
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3115
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 347
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 157
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 110
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1415
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 198
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1888
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13358
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3061
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2434
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6901
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12331
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8722
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 914
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2306
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1812
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2727
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1378
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4086
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22826
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1732
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e0

FS
type: SiteQuality
SIO_000300: 4.537e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.54e-2

DP
type: SiteQuality
SIO_000300: 6.61403e5

VQSLOD
type: SiteQuality
SIO_000300: -9.772e-1

QD
type: SiteQuality
SIO_000300: 1.099e1

MQ
type: SiteQuality
SIO_000300: 5.604e1

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

GenotypeDepth
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2762
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1469
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 114
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.402524544179523e-4
allele num: 7130
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.63e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

MQ
type: SiteQuality
SIO_000300: 5.599e1

QD
type: SiteQuality
SIO_000300: 1.155e1

VQSLOD
type: SiteQuality
SIO_000300: -7.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.64e-1

DP
type: SiteQuality
SIO_000300: 1.34257e5

GenotypeDepth
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 734
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2044
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 373
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 141
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1575
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2865
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 110
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.422475106685633e-4
allele num: 7030
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2530
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.34042e5

QD
type: SiteQuality
SIO_000300: 1.693e1

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

MQRankSum
type: SiteQuality
SIO_000300: 2.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.69e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.055e0

FS
type: SiteQuality
SIO_000300: 1.546e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.51e-1

MQ
type: SiteQuality
SIO_000300: 5.878e1

GenotypeDepth
all individuals: 340
bin: 1.75e1
variant carriers: 2

GenotypeDepth
all individuals: 510
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 82
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 590
bin: 3.25e1
variant carriers: 4

GenotypeDepth
all individuals: 27
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1551
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 173
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 327
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2922
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 155
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.075268817204301e-2
allele num: 186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.433075379764976e-4
allele num: 6978
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 3.152088258471237e-3
allele num: 2538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 112
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.97e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.28289e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-2

MQ
type: SiteQuality
SIO_000300: 5.881e1

QD
type: SiteQuality
SIO_000300: 1.205e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-2

GenotypeDepth
all individuals: 513
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 58
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 836
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1371
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2562
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1026
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1575
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 40
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 108
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 6.004202942059442e-4
allele num: 6662
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.203e0

VQSLOD
type: SiteQuality
SIO_000300: -1.114e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.27e-2

FS
type: SiteQuality
SIO_000300: 2.865e0

QD
type: SiteQuality
SIO_000300: 1.062e1

MQRankSum
type: SiteQuality
SIO_000300: -6.0e-2

MQ
type: SiteQuality
SIO_000300: 5.726e1

DP
type: SiteQuality
SIO_000300: 1.19091e5

ClippingRankSum
type: SiteQuality
SIO_000300: 3.12e-1

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 765
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1010
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1756
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1486
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1494
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2304
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 100
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 3.210272873194221e-4
allele num: 6230
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.97e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.4e0

QD
type: SiteQuality
SIO_000300: 1.226e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.15e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.97e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.97e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.65e-1

DP
type: SiteQuality
SIO_000300: 9.971e4

GenotypeDepth
all individuals: 947
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 126
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 17
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1644
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1265
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2197
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2170
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 3.417634996582365e-4
allele num: 5852
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 94
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.98e0

VQSLOD
type: SiteQuality
SIO_000300: -1.631e0

MQRankSum
type: SiteQuality
SIO_000300: 1.83e0

FS
type: SiteQuality
SIO_000300: 5.382e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.82e-1

DP
type: SiteQuality
SIO_000300: 8.9203e4

QD
type: SiteQuality
SIO_000300: 9.800000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.927e1

GenotypeDepth
all individuals: 649
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1047
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 938
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1685
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2508
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.820830298616169e-4
allele num: 5492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2054
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 78
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.121e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.91e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.8e0

MQRankSum
type: SiteQuality
SIO_000300: 7.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.324e0

MQ
type: SiteQuality
SIO_000300: 5.643e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.72e-1

DP
type: SiteQuality
SIO_000300: 8.2492e4

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 306
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2602
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1741
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 71
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 72
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5228
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.050505050505051e-4
allele num: 1980
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.01e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.1e-1

QD
type: SiteQuality
SIO_000300: 2.007e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.425e0

DP
type: SiteQuality
SIO_000300: 7.382e4

MQ
type: SiteQuality
SIO_000300: 5.923e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

VQSLOD
type: SiteQuality
SIO_000300: -2.631e0

GenotypeDepth
all individuals: 38
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 180
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1760
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 29
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2525
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 270
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.564129301355579e-3
allele num: 1918
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.004008016032064e-4
allele num: 4990
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 72
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.479e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e0

DP
type: SiteQuality
SIO_000300: 6.9835e4

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.41e-2

FS
type: SiteQuality
SIO_000300: 1.43e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 32
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 146
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2428
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1724
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 694
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.446623093681918e-4
allele num: 1836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4792
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 68
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.8375e4

VQSLOD
type: SiteQuality
SIO_000300: 6.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.31e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.72e-1

FS
type: SiteQuality
SIO_000300: 5.068e0

MQRankSum
type: SiteQuality
SIO_000300: -1.513e0

MQ
type: SiteQuality
SIO_000300: 5.168e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-1

QD
type: SiteQuality
SIO_000300: 1.838e1

GenotypeDepth
all individuals: 203
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12385
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 427
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 193
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 549
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7846
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3037
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13482
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8068
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 688
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3156
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3792
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7411
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 970
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2732
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7814
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1589
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6759
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5996
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56882
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.124859392575928e-4
allele num: 8890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7222
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

MQ
type: SiteQuality
SIO_000300: 5.086e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

FS
type: SiteQuality
SIO_000300: 2.157e0

MQRankSum
type: SiteQuality
SIO_000300: -2.691e0

DP
type: SiteQuality
SIO_000300: 1.661905e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.2e0

QD
type: SiteQuality
SIO_000300: 7.8e0

GenotypeDepth
all individuals: 510
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1357
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 257
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 187
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3037
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 193
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 918
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 203
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1589
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13482
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7411
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7814
bin: 9.75e1
variant carriers: 50

GenotypeQuality
all individuals: 8068
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 970
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3792
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3156
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 688
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6759
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2732
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14330
num of homozygotes: 0

East Asian
type: Population
allele count: 47
allele frequency: 6.507892550540017e-3
allele num: 7222
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5996
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.157e0

QD
type: SiteQuality
SIO_000300: 7.8e0

MQ
type: SiteQuality
SIO_000300: 5.086e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.53e-1

DP
type: SiteQuality
SIO_000300: 1.661905e6

MQRankSum
type: SiteQuality
SIO_000300: -2.691e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

GenotypeDepth
all individuals: 919
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1842
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12996
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 203
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 549
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 299
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 193
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7766
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 382
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6606
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13496
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2961
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8022
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7354
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1627
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3772
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2603
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1091
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7142
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6018
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8910
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.75284837861525e-5
allele num: 57050
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8694
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.408e0

MQRankSum
type: SiteQuality
SIO_000300: 2.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.68e-1

QD
type: SiteQuality
SIO_000300: 1.166e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQ
type: SiteQuality
SIO_000300: 6.134e1

DP
type: SiteQuality
SIO_000300: 1.665847e6

GenotypeDepth
all individuals: 9902
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 257
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 168
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3037
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 203
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 427
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1366
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1189
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7710
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1943
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27088
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2807
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2873
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4564
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7774
bin: 9.75e1
variant carriers: 5

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7430
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 5.36365586783952e-4
allele num: 9322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6106
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14544
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

DP
type: SiteQuality
SIO_000300: 1.780776e6

VQSLOD
type: SiteQuality
SIO_000300: 7.39e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

FS
type: SiteQuality
SIO_000300: 6.528e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.27e1

GenotypeDepth
all individuals: 549
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 299
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4964
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1191
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2008
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 919
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 187
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3037
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7327
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29068
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2312
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3872
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2510
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 727
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2012
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7771
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 173
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.400319630045224e-5
allele num: 58818
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8892
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.372495196266813e-4
allele num: 14572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6130
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

FS
type: SiteQuality
SIO_000300: 7.171e0

QD
type: SiteQuality
SIO_000300: 1.094e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.688e0

DP
type: SiteQuality
SIO_000300: 1.806835e6

VQSLOD
type: SiteQuality
SIO_000300: 9.370000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 299
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3037
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 427
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 920
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 187
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 203
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 193
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 189
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32279
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2018
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7770
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6581
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2967
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2142
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1641
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6218
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.11358574610245e-4
allele num: 8980
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7678
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9708
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14724
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -4.22e-2

DP
type: SiteQuality
SIO_000300: 1.841787e6

MQRankSum
type: SiteQuality
SIO_000300: 1.8e0

FS
type: SiteQuality
SIO_000300: 1.652e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.411e1

GenotypeDepth
all individuals: 6241
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 203
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3037
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2053
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1190
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 427
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 299
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1641
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6581
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32279
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2142
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2018
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2967
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7770
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 359
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.11358574610245e-4
allele num: 8980
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6218
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7678
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14724
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.8e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

QD
type: SiteQuality
SIO_000300: 1.411e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.01e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.22e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.95e-1

FS
type: SiteQuality
SIO_000300: 1.652e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-2

DP
type: SiteQuality
SIO_000300: 1.841787e6

GenotypeDepth
all individuals: 61
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 36140
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 257
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2146
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 203
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1374
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 193
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2532
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 880
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1085
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3777
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7771
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 200
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39494
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15236
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.142704092564817e-4
allele num: 9334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62990
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.587e0

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e-1

DP
type: SiteQuality
SIO_000300: 1.929737e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.05e0

QD
type: SiteQuality
SIO_000300: 1.425e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.22e-1

GenotypeDepth
all individuals: 190
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 7067
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 297
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1195
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2254
bin: 3.25e1
variant carriers: 2

GenotypeDepth
all individuals: 2419
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 552
bin: 5.25e1
variant carriers: 2

GenotypeDepth
all individuals: 257
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 181
bin: 9.25e1
variant carriers: 2

GenotypeDepth
all individuals: 37805
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 194
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 187
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7779
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 41575
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 795
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2581
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2647
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10800
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.109839532280134e-5
allele num: 64312
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8352
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 7.720020586721565e-4
allele num: 15544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.25e1

MQRankSum
type: SiteQuality
SIO_000300: -5.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.22e-2

DP
type: SiteQuality
SIO_000300: 1.962227e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.016e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.9e0

GenotypeDepth
all individuals: 1537
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7628
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3037
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1196
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 920
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 38869
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 255
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 746
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 257
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 193
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 298
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2320
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 428
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 203
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7770
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 109
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1659
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2778
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43534
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11098
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531768886710373e-5
allele num: 65284
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.869e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.56e-1

DP
type: SiteQuality
SIO_000300: 1.985691e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

QD
type: SiteQuality
SIO_000300: 2.653e1

FS
type: SiteQuality
SIO_000300: 1.256e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.14e-1

GenotypeDepth
all individuals: 921
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 178
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 53
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 770
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 203
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2388
bin: 3.25e1
variant carriers: 3

GenotypeDepth
all individuals: 552
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 297
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 38909
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 429
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 193
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7779
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 116
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44421
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3010
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 779
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 924
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16124
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.055834796826743e-5
allele num: 66052
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 8
allele frequency: 1.215436037678517e-3
allele num: 6582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9684
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.123595505617978e-3
allele num: 890
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.97e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

QD
type: SiteQuality
SIO_000300: 1.389e1

VQSLOD
type: SiteQuality
SIO_000300: 4.81e0

DP
type: SiteQuality
SIO_000300: 2.008509e6

MQ
type: SiteQuality
SIO_000300: 5.981e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.95e-1

GenotypeDepth
all individuals: 54
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 359
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8768
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 297
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 256
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 193
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 38967
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3037
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 920
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 178
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 203
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7771
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44712
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 867
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3030
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.516990291262136e-4
allele num: 6592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16154
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66106
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9696
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.814e0

MQ
type: SiteQuality
SIO_000300: 5.881e1

VQSLOD
type: SiteQuality
SIO_000300: -1.493e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.317e0

DP
type: SiteQuality
SIO_000300: 2.009621e6

QD
type: SiteQuality
SIO_000300: 1.142e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.57e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

GenotypeDepth
all individuals: 188
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3037
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1190
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1385
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 189
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 920
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 424
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8917
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 203
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 430
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 256
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 846
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3043
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7771
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 780
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 907
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44577
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.812125484666901e-5
allele num: 11348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66130
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9696
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

FS
type: SiteQuality
SIO_000300: 5.24e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.81e-1

DP
type: SiteQuality
SIO_000300: 2.010267e6

MQ
type: SiteQuality
SIO_000300: 5.759e1

VQSLOD
type: SiteQuality
SIO_000300: -4.423e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.31e-1

QD
type: SiteQuality
SIO_000300: 1.402e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.08e0

GenotypeDepth
all individuals: 537
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 256
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9048
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 189
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 178
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 188
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 920
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3037
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 167
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44330
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1033
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 836
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7769
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3037
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9692
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513317191283293e-5
allele num: 66080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16144
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 1.191e1

DP
type: SiteQuality
SIO_000300: 2.009539e6

FS
type: SiteQuality
SIO_000300: 5.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

VQSLOD
type: SiteQuality
SIO_000300: -5.129e-1

MQ
type: SiteQuality
SIO_000300: 5.864e1

GenotypeDepth
all individuals: 63
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1395
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 203
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1194
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2413
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3037
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 188
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 552
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1403
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3049
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43729
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7769
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 185
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65926
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.032204789430223e-4
allele num: 9688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11288
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16060
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.005677e6

QD
type: SiteQuality
SIO_000300: 1.368e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.778e0

MQRankSum
type: SiteQuality
SIO_000300: -1.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.6e-1

GenotypeDepth
all individuals: 892
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2413
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 37734
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 297
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 188
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1194
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 256
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 921
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1403
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3049
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7769
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 693
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43729
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516852228255923e-5
allele num: 65926
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16060
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9688
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.368e1

VQSLOD
type: SiteQuality
SIO_000300: 2.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.778e0

MQRankSum
type: SiteQuality
SIO_000300: -1.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.6e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.005677e6

GenotypeDepth
all individuals: 189
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 920
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 178
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 193
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3037
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1387
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 37179
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 429
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3068
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1750
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43388
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7771
bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 2
allele frequency: 1.249687578105474e-4
allele num: 16004
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9662
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11242
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65750
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.123e1

MQRankSum
type: SiteQuality
SIO_000300: -4.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.9e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

FS
type: SiteQuality
SIO_000300: 9.85e-1

DP
type: SiteQuality
SIO_000300: 1.999993e6

GenotypeDepth
all individuals: 297
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 189
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3037
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 203
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 920
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 36975
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 256
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 188
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7769
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 89
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1854
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43206
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3060
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11216
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65692
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.035840066293764e-4
allele num: 9654
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15994
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.441e0

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

QD
type: SiteQuality
SIO_000300: 8.039999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.24e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.051e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQ
type: SiteQuality
SIO_000300: 5.948e1

FS
type: SiteQuality
SIO_000300: 8.045999999999999e0

DP
type: SiteQuality
SIO_000300: 1.998626e6

GenotypeDepth
all individuals: 1190
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 189
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7205
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8233
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 203
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 178
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33021
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8553
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2245
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1674
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 891
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1761
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7769
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 601
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8080
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6306
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9240
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15240
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.604878831648211e-5
allele num: 62310
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.64e0

DP
type: SiteQuality
SIO_000300: 1.884472e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.2e0

FS
type: SiteQuality
SIO_000300: 2.644e0

VQSLOD
type: SiteQuality
SIO_000300: -3.246e0

QD
type: SiteQuality
SIO_000300: 2.52e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.493e0

GenotypeDepth
all individuals: 256
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2482
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1986
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28615
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11269
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2341
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7769
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 695
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6210
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7920
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15064
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9136
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.637572462581469e-5
allele num: 61066
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.3e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.079e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 6.62e0

MQRankSum
type: SiteQuality
SIO_000300: -7.49e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -9.944e-1

DP
type: SiteQuality
SIO_000300: 1.835675e6

GenotypeDepth
all individuals: 178
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1812
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13392
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2935
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3226
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24256
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1588
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7769
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 379
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6152
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9010
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7762
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9604
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.712310377231843e-5
allele num: 14898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60112
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.87e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.599999999999999e-2

MQ
type: SiteQuality
SIO_000300: 6.069e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.590000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.57e0

QD
type: SiteQuality
SIO_000300: 1.009e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.03e-1

DP
type: SiteQuality
SIO_000300: 1.792073e6

GenotypeDepth
all individuals: 1385
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1584
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2188
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16603
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7769
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 300
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4054
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 652
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17389
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4455
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6032
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8834
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58064
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.825938566552901e-5
allele num: 14650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9064
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.32e-1

QD
type: SiteQuality
SIO_000300: 1.771e1

VQSLOD
type: SiteQuality
SIO_000300: -3.754e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

FS
type: SiteQuality
SIO_000300: 6.97e-1

MQ
type: SiteQuality
SIO_000300: 5.884e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.716192e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.32e-1

GenotypeDepth
all individuals: 3037
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 349
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12140
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1374
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 866
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5668
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18712
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7765
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5008
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2910
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5940
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56652
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7220
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14416
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8664
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8664
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.291989664082687e-3
allele num: 774
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.375e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e0

VQSLOD
type: SiteQuality
SIO_000300: -2.52e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.938e0

QD
type: SiteQuality
SIO_000300: 1.655e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.86e0

FS
type: SiteQuality
SIO_000300: 1.439e0

MQ
type: SiteQuality
SIO_000300: 5.845e1

DP
type: SiteQuality
SIO_000300: 1.649544e6

GenotypeDepth
all individuals: 299
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 7961
bin: 9.75e1
variant carriers: 255

GenotypeQuality
all individuals: 259
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5716
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1222
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 382
bin: 8.75e1
variant carriers: 5

GenotypeQuality
all individuals: 3717
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 610
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18971
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 672
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8077
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1367
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6820
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 980
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 632
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 492
bin: 7.25e1
variant carriers: 4

GenotypeQuality
all individuals: 637
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 188
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 9.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 19
allele frequency: 3.444150382481964e-4
allele num: 55166
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.038288288288288e-5
allele num: 14208
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 1.444043321299639e-3
allele num: 8310
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6966
num of homozygotes: 0

African
type: Population
allele count: 232
allele frequency: 2.716627634660422e-2
allele num: 8540
num of homozygotes: 1

Other
type: Population
allele count: 2
allele frequency: 2.652519893899204e-3
allele num: 754
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5872
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e-2

QD
type: SiteQuality
SIO_000300: 1.488e1

DP
type: SiteQuality
SIO_000300: 1.600962e6

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.71e0

FS
type: SiteQuality
SIO_000300: 7.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.07e0

GenotypeDepth
all individuals: 255
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6516
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1161
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1090
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 855
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 753
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 938
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7129
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4078
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5866
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18655
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1611
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7765
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 512
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8130
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14106
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5824
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.831099392075002e-5
allele num: 54612
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.36e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.81e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.871e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.174e0

QD
type: SiteQuality
SIO_000300: 7.15e0

VQSLOD
type: SiteQuality
SIO_000300: -2.097e0

DP
type: SiteQuality
SIO_000300: 1.58617e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.81e-1

GenotypeDepth
all individuals: 1566
bin: 3.25e1
variant carriers: 41

GenotypeQuality
all individuals: 413
bin: 8.75e1
variant carriers: 51

GenotypeQuality
all individuals: 3376
bin: 6.25e1
variant carriers: 12

GenotypeQuality
all individuals: 1463
bin: 4.25e1
variant carriers: 5

GenotypeQuality
all individuals: 142
bin: 5.75e1
variant carriers: 23

GenotypeQuality
all individuals: 1756
bin: 1.25e1
variant carriers: 7

GenotypeQuality
all individuals: 658
bin: 2.5e0
variant carriers: 5

GenotypeQuality
all individuals: 1401
bin: 4.75e1
variant carriers: 10

GenotypeQuality
all individuals: 16191
bin: 2.25e1
variant carriers: 8

GenotypeQuality
all individuals: 409
bin: 5.25e1
variant carriers: 15

GenotypeQuality
all individuals: 2036
bin: 1.75e1
variant carriers: 8

GenotypeQuality
all individuals: 5732
bin: 2.75e1
variant carriers: 6

GenotypeQuality
all individuals: 428
bin: 7.25e1
variant carriers: 7

GenotypeQuality
all individuals: 2535
bin: 7.5e0
variant carriers: 5

GenotypeQuality
all individuals: 603
bin: 7.75e1
variant carriers: 19

GenotypeQuality
all individuals: 636
bin: 8.25e1
variant carriers: 39

GenotypeQuality
all individuals: 7198
bin: 3.25e1
variant carriers: 7

GenotypeQuality
all individuals: 4497
bin: 3.75e1
variant carriers: 12

GenotypeQuality
all individuals: 612
bin: 9.25e1
variant carriers: 42

GenotypeQuality
all individuals: 9346
bin: 9.75e1
variant carriers: 1858

GenotypeQuality
all individuals: 964
bin: 6.75e1
variant carriers: 12

Latino
type: Population
allele count: 106
allele frequency: 1.482517482517483e-2
allele num: 7150
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 1388
allele frequency: 2.730241158188756e-2
allele num: 50838
num of homozygotes: 23

Other
type: Population
allele count: 11
allele frequency: 1.553672316384181e-2
allele num: 708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 116
allele frequency: 2.092352092352092e-2
allele num: 5544
num of homozygotes: 1

African
type: Population
allele count: 32
allele frequency: 3.977131493910017e-3
allele num: 8046
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6324
num of homozygotes: 0

South Asian
type: Population
allele count: 248
allele frequency: 1.845238095238095e-2
allele num: 13440
num of homozygotes: 4

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.473e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.538857e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.12e0

MQRankSum
type: SiteQuality
SIO_000300: 8.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e-1

GenotypeDepth
all individuals: 190
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2263
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1819
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2726
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15402
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1654
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2790
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7518
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2943
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5847
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4717
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7771
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 7.57002271006813e-5
allele num: 13210
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6092
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7850
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6766
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49330
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.568e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.135e0

QD
type: SiteQuality
SIO_000300: 1.17e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

MQRankSum
type: SiteQuality
SIO_000300: 7.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e0

VQSLOD
type: SiteQuality
SIO_000300: -6.471e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.500000000000001e-3

DP
type: SiteQuality
SIO_000300: 1.5241e6

GenotypeDepth
all individuals: 205
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4752
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2765
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13140
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2520
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5611
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1104
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 924
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1711
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5145
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7426
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7774
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 621
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1789
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2051
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7652
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6278
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.544640098856966e-4
allele num: 12948
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.61e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.299999999999999e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.51e-1

DP
type: SiteQuality
SIO_000300: 1.517344e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.13e-1

QD
type: SiteQuality
SIO_000300: 1.189e1

GenotypeDepth
all individuals: 177
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13078
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4791
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5220
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7514
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1717
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5594
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2457
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1862
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2677
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2065
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7773
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1095
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12962
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7672
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5342
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6214
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47598
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.699999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.441e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.42e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.45e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.517485e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e0

QD
type: SiteQuality
SIO_000300: 2.688e1

GenotypeDepth
all individuals: 146
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4517
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3329
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1122
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1179
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3094
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23379
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4118
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6654
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3611
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 81
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1133
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2854
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3384
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30366
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.956192751891676e-5
allele num: 10044
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2924
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4184
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2596
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.924e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

FS
type: SiteQuality
SIO_000300: 6.273e0

MQRankSum
type: SiteQuality
SIO_000300: -9.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.07e-2

QD
type: SiteQuality
SIO_000300: 1.372e1

MQ
type: SiteQuality
SIO_000300: 5.92e1

DP
type: SiteQuality
SIO_000300: 9.72832e5

GenotypeDepth
all individuals: 164
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 260
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24068
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2977
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1064
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4543
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1073
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4022
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3055
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2615
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6969
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3609
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3398
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5778
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2958
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10058
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2634
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4202
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.14e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.154e1

DP
type: SiteQuality
SIO_000300: 9.76379e5

GenotypeDepth
all individuals: 167
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4419
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2091
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3711
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7811
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3368
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 929
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25783
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2882
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3610
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2094
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1161
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10100
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30726
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5796
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2972
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 460
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.307e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.464e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.307e0

DP
type: SiteQuality
SIO_000300: 9.87279e5

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 4.86e0

GenotypeDepth
all individuals: 167
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2608
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1185
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27084
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3352
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1614
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8741
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1598
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4233
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3302
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3610
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 134
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30918
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4248
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5832
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.331112591605596e-4
allele num: 3002
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10106
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2680
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-2

DP
type: SiteQuality
SIO_000300: 9.9909e5

QD
type: SiteQuality
SIO_000300: 1.081e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.22e-1

GenotypeDepth
all individuals: 137
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9569
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3078
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2336
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27909
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1339
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4007
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3611
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 656
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3181
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1187
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4258
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3012
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2658
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.441638752898738e-5
allele num: 31048
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 460
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.96e-1

FS
type: SiteQuality
SIO_000300: 4.416e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.399999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.422e0

QD
type: SiteQuality
SIO_000300: 5.55e0

DP
type: SiteQuality
SIO_000300: 1.01064e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.67e-1

MQ
type: SiteQuality
SIO_000300: 6.148e1

GenotypeDepth
all individuals: 137
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1207
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2951
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1167
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3944
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3176
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9882
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1219
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2248
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28221
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3610
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3032
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2690
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.205744694492531e-5
allele num: 31194
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.865824782951855e-5
allele num: 10136
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5866
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.012e0

QD
type: SiteQuality
SIO_000300: 2.36e0

MQRankSum
type: SiteQuality
SIO_000300: -2.764e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.78e0

MQ
type: SiteQuality
SIO_000300: 5.683e1

FS
type: SiteQuality
SIO_000300: 4.515e0

VQSLOD
type: SiteQuality
SIO_000300: -3.855e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.8e-3

DP
type: SiteQuality
SIO_000300: 1.01367e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.19e-1

GenotypeDepth
all individuals: 146
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1217
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 993
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28702
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10628
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3695
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2732
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1988
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3051
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3609
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1090
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10170
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4324
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3078
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2700
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.190403266972946e-5
allele num: 31344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.45e-1

QD
type: SiteQuality
SIO_000300: 1.201e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

VQSLOD
type: SiteQuality
SIO_000300: 2.54e0

FS
type: SiteQuality
SIO_000300: 2.614e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.022974e6

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.6e-3

GenotypeDepth
all individuals: 356
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1221
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10842
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3523
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28771
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 886
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1826
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2990
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2580
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1216
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3609
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 105
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2704
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.178841630109988e-5
allele num: 31458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3088
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4354
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 456
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.41e0

MQRankSum
type: SiteQuality
SIO_000300: -8.0e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.344e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.93e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.133e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

DP
type: SiteQuality
SIO_000300: 1.02989e6

GenotypeDepth
all individuals: 201
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 135
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 167
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 445
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29801
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3609
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 342
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1008
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2280
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1583
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14581
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1292
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2279
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 480
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.002400960384154e-5
allele num: 33320
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2834
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3432
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

QD
type: SiteQuality
SIO_000300: 1.326e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.21e0

VQSLOD
type: SiteQuality
SIO_000300: 9.55e-1

DP
type: SiteQuality
SIO_000300: 1.083772e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.74e-1

GenotypeDepth
all individuals: 1411
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 164
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 146
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14071
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 167
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1730
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1305
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29849
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1454
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1341
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3608
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 583
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16760
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.580278128950695e-4
allele num: 6328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35012
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4800
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 8.69e0

DP
type: SiteQuality
SIO_000300: 1.11877e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.34e-1

FS
type: SiteQuality
SIO_000300: 4.068e0

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

QD
type: SiteQuality
SIO_000300: 1.488e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e0

GenotypeDepth
all individuals: 1411
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1677
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1375
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1570
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3610
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 31372
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1247
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 154
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15028
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 5.25e1
variant carriers: 0