2-86716649-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86716649
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86716649
    reference: chr 2
allele count: 1
allele frequency: 8.286789200656313e-6
allele num: 120674
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3440T>G
  hgvsp: ENSP00000386660.1:p.Leu1147Arg
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3440T>G
  hgvsp: ENSP00000323659.5:p.Leu1147Arg
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000462197
  gene symbol: KDM3A
  hgvsc: ENST00000462197.1:n.384T>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.1833T>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*4167T>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2599T>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3440T>G
  hgvsp: ENSP00000386516.1:p.Leu1147Arg
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3284T>G
  hgvsp: ENSP00000438324.1:p.Leu1095Arg
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000483866
  gene symbol: KDM3A
  hgvsc: ENST00000483866.1:n.268T>G
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5213
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4655
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4939
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7215
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3535
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6328
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2746
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1880
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu1147Arg
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

2-86716662-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86716662
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86716662
    reference: chr 2
allele count: 4
allele frequency: 3.311258278145695e-5
allele num: 120800
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000483866
  gene symbol: KDM3A
  hgvsc: ENST00000483866.1:n.281A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3297A>G
  hgvsp: ENST00000542128.1:c.3297A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2612A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3453A>G
  hgvsp: ENST00000409556.1:c.3453A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.1846A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3453A>G
  hgvsp: ENST00000312912.5:c.3453A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*4180A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3453A>G
  hgvsp: ENST00000409064.1:c.3453A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000462197
  gene symbol: KDM3A
  hgvsc: ENST00000462197.1:n.397A>G
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3534
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5445
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4939
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6312
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4986
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7217
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5656
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7192
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2565
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln1151Gln
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum

2-86716673-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86716673
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86716673
    reference: chr 2
allele count: 1
allele frequency: 8.274036074797286e-6
allele num: 120860
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3464C>T
  hgvsp: ENSP00000386660.1:p.Ser1155Phe
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3464C>T
  hgvsp: ENSP00000323659.5:p.Ser1155Phe
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000483866
  gene symbol: KDM3A
  hgvsc: ENST00000483866.1:n.292C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000462197
  gene symbol: KDM3A
  hgvsc: ENST00000462197.1:n.408C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3464C>T
  hgvsp: ENSP00000386516.1:p.Ser1155Phe
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2623C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3308C>T
  hgvsp: ENSP00000438324.1:p.Ser1103Phe
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.1857C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*4191C>T
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5551
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4939
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6317
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7216
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5680
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3534
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2560
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3212
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser1155Phe
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ

2-86716677-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86716677
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86716677
    reference: chr 2
allele count: 4
allele frequency: 3.308738378056447e-5
allele num: 120892
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3312C>T
  hgvsp: ENST00000542128.1:c.3312C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000462197
  gene symbol: KDM3A
  hgvsc: ENST00000462197.1:n.412C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000483866
  gene symbol: KDM3A
  hgvsc: ENST00000483866.1:n.296C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3468C>T
  hgvsp: ENST00000409064.1:c.3468C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3468C>T
  hgvsp: ENST00000409556.1:c.3468C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*4195C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2627C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3468C>T
  hgvsp: ENST00000312912.5:c.3468C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.1861C>T
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5291
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5634
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6322
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3534
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5712
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2836
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9319
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp1156Asp
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP

2-86716678-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86716678
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86716678
    reference: chr 2
allele count: 4
allele frequency: 3.308191081116845e-5
allele num: 120912
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000462197
  gene symbol: KDM3A
  hgvsc: ENST00000462197.1:n.413G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3469G>A
  hgvsp: ENSP00000323659.5:p.Glu1157Lys
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3469G>A
  hgvsp: ENSP00000386516.1:p.Glu1157Lys
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*4196G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000483866
  gene symbol: KDM3A
  hgvsc: ENST00000483866.1:n.297G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3469G>A
  hgvsp: ENSP00000386660.1:p.Glu1157Lys
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2628G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3313G>A
  hgvsp: ENSP00000438324.1:p.Glu1105Lys
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.1862G>A
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6314
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5313
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3533
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4939
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7217
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6327
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9455
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2767
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2571
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu1157Lys
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

2-86716702-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86716702
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86716702
    reference: chr 2
allele count: 2
allele frequency: 1.652155236506022e-5
allele num: 121054
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3493G>A
  hgvsp: ENSP00000386660.1:p.Glu1165Lys
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3337G>A
  hgvsp: ENSP00000438324.1:p.Glu1113Lys
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000483866
  gene symbol: KDM3A
  hgvsc: ENST00000483866.1:n.321G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000462197
  gene symbol: KDM3A
  hgvsc: ENST00000462197.1:n.437G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*4220G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3493G>A
  hgvsp: ENSP00000386516.1:p.Glu1165Lys
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.1886G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3493G>A
  hgvsp: ENSP00000323659.5:p.Glu1165Lys
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2652G>A
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7205
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4941
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7220
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5515
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu1165Lys
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

2-86716704-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86716704
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86716704
    reference: chr 2
allele count: 2
allele frequency: 1.652018766933192e-5
allele num: 121064
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3495A>G
  hgvsp: ENST00000409556.1:c.3495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3339A>G
  hgvsp: ENST00000542128.1:c.3339A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000483866
  gene symbol: KDM3A
  hgvsc: ENST00000483866.1:n.323A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.1888A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000462197
  gene symbol: KDM3A
  hgvsc: ENST00000462197.1:n.439A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*4222A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2654A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3495A>G
  hgvsp: ENST00000409064.1:c.3495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3495A>G
  hgvsp: ENST00000312912.5:c.3495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6328
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5814
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4940
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3533
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1880
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu1165Glu
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD

2-86716707-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86716707
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86716707
    reference: chr 2
allele count: 1
allele frequency: 8.259820927082301e-6
allele num: 121068
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000462197
  gene symbol: KDM3A
  hgvsc: ENST00000462197.1:n.442A>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.1891A>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*4225A>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3498A>T
  hgvsp: ENST00000312912.5:c.3498A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3498A>T
  hgvsp: ENST00000409064.1:c.3498A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3498A>T
  hgvsp: ENST00000409556.1:c.3498A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2657A>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3342A>T
  hgvsp: ENST00000542128.1:c.3342A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000483866
  gene symbol: KDM3A
  hgvsc: ENST00000483866.1:n.326A>T
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7219
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5768
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5512
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4941
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7198
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6329
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1892
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly1166Gly
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
reference allele: A
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/2-86716710-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86716710
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86716710
    reference: chr 2
allele count: 1
allele frequency: 8.258320257659592e-6
allele num: 121090
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*4228A>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.1894A>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3501A>C
  hgvsp: ENSP00000323659.5:p.Lys1167Asn
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3345A>C
  hgvsp: ENSP00000438324.1:p.Lys1115Asn
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000462197
  gene symbol: KDM3A
  hgvsc: ENST00000462197.1:n.445A>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000483866
  gene symbol: KDM3A
  hgvsc: ENST00000483866.1:n.329A>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3501A>C
  hgvsp: ENSP00000386516.1:p.Lys1167Asn
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3501A>C
  hgvsp: ENSP00000386660.1:p.Lys1167Asn
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2660A>C
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4940
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5764
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6332
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7219
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1892
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Lys1167Asn
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

2-86716716-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86716716
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86716716
    reference: chr 2
allele count: 5
allele frequency: 4.128819157720892e-5
allele num: 121100
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*4234G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000483866
  gene symbol: KDM3A
  hgvsc: ENST00000483866.1:n.335G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3507G>A
  hgvsp: ENST00000312912.5:c.3507G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2666G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3507G>A
  hgvsp: ENST00000409556.1:c.3507G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3507G>A
  hgvsp: ENST00000409064.1:c.3507G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.1900G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3351G>A
  hgvsp: ENST00000542128.1:c.3351G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5767
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7221
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5835
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6329
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4941
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2846
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1882
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Lys1169Lys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

2-86716734-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86716734
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86716734
    reference: chr 2
allele count: 2
allele frequency: 1.652127940787734e-5
allele num: 121056
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*4252C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3525C>T
  hgvsp: ENST00000312912.5:c.3525C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.1918C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3369C>T
  hgvsp: ENST00000542128.1:c.3369C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3525C>T
  hgvsp: ENST00000409556.1:c.3525C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3525C>T
  hgvsp: ENST00000409064.1:c.3525C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2684C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000483866
  gene symbol: KDM3A
  hgvsc: ENST00000483866.1:n.353C>T
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5920
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4942
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6331
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7220
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5750
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3533
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1894
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9923
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3267
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2572
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
hgvs: p.His1175His
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

2-86716754-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86716754
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86716754
    reference: chr 2
allele count: 3
allele frequency: 2.490329221523085e-5
allele num: 120466
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3389C>T
  hgvsp: ENSP00000438324.1:p.Thr1130Met
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.1938C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000483866
  gene symbol: KDM3A
  hgvsc: ENST00000483866.1:n.373C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*4272C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3545C>T
  hgvsp: ENSP00000323659.5:p.Thr1182Met
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2704C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3545C>T
  hgvsp: ENSP00000386660.1:p.Thr1182Met
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3545C>T
  hgvsp: ENSP00000386516.1:p.Thr1182Met
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6339
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5739
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5790
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4943
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7223
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4826
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35112
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1890
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr1182Met
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

2-86716755-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86716755
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86716755
    reference: chr 2
allele count: 1
allele frequency: 8.302889405513118e-6
allele num: 120440
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3390G>A
  hgvsp: ENST00000542128.1:c.3390G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000483866
  gene symbol: KDM3A
  hgvsc: ENST00000483866.1:n.374G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3546G>A
  hgvsp: ENST00000312912.5:c.3546G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3546G>A
  hgvsp: ENST00000409556.1:c.3546G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2705G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.1939G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*4273G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3546G>A
  hgvsp: ENST00000409064.1:c.3546G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4943
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3533
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6336
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7220
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5781
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4767
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7199
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2789
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2845
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2555
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr1182Thr
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ

2-86716766-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86716766
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86716766
    reference: chr 2
allele count: 1
allele frequency: 8.365680631776201e-6
allele num: 119536
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3557G>A
  hgvsp: ENSP00000386516.1:p.Arg1186Lys
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3557G>A
  hgvsp: ENSP00000323659.5:p.Arg1186Lys
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3557G>A
  hgvsp: ENSP00000386660.1:p.Arg1186Lys
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3401G>A
  hgvsp: ENSP00000438324.1:p.Arg1134Lys
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000483866
  gene symbol: KDM3A
  hgvsc: ENST00000483866.1:n.385G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*4284G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.1950G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2716G>A
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5654
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6333
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3533
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4942
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5398
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7219
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4073
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1567
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3099
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg1186Lys
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

2-86716770-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86716770
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86716770
    reference: chr 2
allele count: 79
allele frequency: 6.631856416111214e-4
allele num: 119122
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000483866
  gene symbol: KDM3A
  hgvsc: ENST00000483866.1:n.389A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3561A>G
  hgvsp: ENST00000312912.5:c.3561A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*4288A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3561A>G
  hgvsp: ENST00000409556.1:c.3561A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3561A>G
  hgvsp: ENST00000409064.1:c.3561A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2720A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3405A>G
  hgvsp: ENST00000542128.1:c.3405A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.1954A>G
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5206
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6325
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5613
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 9.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 4937
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 7210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6318
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3695
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3534
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7185
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 8.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1835
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1886
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1964
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu1187Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

2-86716797-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86716797
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86716797
    reference: chr 2
allele count: 1
allele frequency: 8.535481998668465e-6
allele num: 117158
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2732+15G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3573+15G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.1966+15G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3573+15G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*4315G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3573+15G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3417+15G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000483866
  gene symbol: KDM3A
  hgvsc: ENST00000483866.1:n.401+15G>A
  variant of: http://identifiers.org/hgnc/20815
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5539
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2604
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4406
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6313
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4939
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7225
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3478
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2535
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1815
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

2-86716812-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86716812
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86716812
    reference: chr 2
allele count: 1
allele frequency: 8.617272460920669e-6
allele num: 116046
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.1966+30G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2732+30G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*4330G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3573+30G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3417+30G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000483866
  gene symbol: KDM3A
  hgvsc: ENST00000483866.1:n.401+30G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3573+30G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3573+30G>C
  variant of: http://identifiers.org/hgnc/20815
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4940
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7223
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6308
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5508
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4199
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1792
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: Latino
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-86716814-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86716814
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86716814
    reference: chr 2
allele count: 132
allele frequency: 1.140526715974286e-3
allele num: 115736
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000483866
  gene symbol: KDM3A
  hgvsc: ENST00000483866.1:n.401+32C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3573+32C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2732+32C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3573+32C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.1966+32C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*4332C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3417+32C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3573+32C>T
  variant of: http://identifiers.org/hgnc/20815
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5504
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7212
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6325
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6299
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4937
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3530
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7187
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 9.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4146
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3294
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2510
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2859
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 1
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

2-86716829-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86716829
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86716829
    reference: chr 2
allele count: 1
allele frequency: 8.753041681984489e-6
allele num: 114246
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3573+47T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2732+47T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3573+47T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.1966+47T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000483866
  gene symbol: KDM3A
  hgvsc: ENST00000483866.1:n.401+47T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3417+47T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*4347T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3573+47T>C
  variant of: http://identifiers.org/hgnc/20815
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3756
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4940
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7192
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6299
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3527
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5367
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2837
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2773
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2737
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1886
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

2-86716830-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86716830
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86716831
    reference: chr 2
allele count: 6
allele frequency: 5.254492591165447e-5
allele num: 114188
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000483866
  gene symbol: KDM3A
  hgvsc: ENST00000483866.1:n.401+50dupT
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3417+50dupT
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*4350dupT
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.1966+50dupT
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2732+50dupT
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3573+50dupT
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3573+50dupT
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3573+50dupT
  variant of: http://identifiers.org/hgnc/20815
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3530
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4942
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7213
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2784
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2730
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2835
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2095
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35113
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2772
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

2-86716830-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86716830
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86716830
    reference: chr 2
allele count: 2
allele frequency: 1.751497530388482e-5
allele num: 114188
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000483866
  gene symbol: KDM3A
  hgvsc: ENST00000483866.1:n.401+48A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*4348A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.1966+48A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3417+48A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2732+48A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3573+48A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3573+48A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3573+48A>G
  variant of: http://identifiers.org/hgnc/20815
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4942
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2784
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7213
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3530
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1884
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4032
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

2-86716834-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86716834
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86716834
    reference: chr 2
allele count: 1
allele frequency: 8.798789286594165e-6
allele num: 113652
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.1966+52T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2732+52T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3573+52T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*4352T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000483866
  gene symbol: KDM3A
  hgvsc: ENST00000483866.1:n.401+52T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3573+52T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3417+52T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3573+52T>C
  variant of: http://identifiers.org/hgnc/20815
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2827
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3747
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5332
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7192
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4941
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1282
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35110
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3180
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1002
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

2-86717954-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86717954
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86717954
    reference: chr 2
allele count: 2
allele frequency: 2.408187838651415e-5
allele num: 83050
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3418-50T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.1967-50T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5472T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000483866
  gene symbol: KDM3A
  hgvsc: ENST00000483866.1:n.402-50T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2733-50T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3574-50T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3574-50T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3574-50T>C
  variant of: http://identifiers.org/hgnc/20815
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16352
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9940
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20493
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4054
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1605
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2792
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5481
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7065
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4314
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11102
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1585
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

2-86717966-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86717966
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86717966
    reference: chr 2
allele count: 1
allele frequency: 1.179718283273954e-5
allele num: 84766
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3574-38A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2733-38A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5484A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3418-38A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000483866
  gene symbol: KDM3A
  hgvsc: ENST00000483866.1:n.402-38A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.1967-38A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3574-38A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3574-38A>G
  variant of: http://identifiers.org/hgnc/20815
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19236
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16473
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10302
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2033
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3147
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6254
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1818
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

2-86717973-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86717973
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86717973
    reference: chr 2
allele count: 1
allele frequency: 1.155561718551388e-5
allele num: 86538
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3418-31T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3574-31T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2733-31T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3574-31T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000483866
  gene symbol: KDM3A
  hgvsc: ENST00000483866.1:n.402-31T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5491T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.1967-31T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3574-31T>C
  variant of: http://identifiers.org/hgnc/20815
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3021
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15823
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16216
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7324
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4961
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3158
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15585
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

2-86717981-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86717981
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86717981
    reference: chr 2
allele count: 1
allele frequency: 1.095602252558231e-5
allele num: 91274
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2733-23A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3574-23A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000483866
  gene symbol: KDM3A
  hgvsc: ENST00000483866.1:n.402-23A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3574-23A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.1967-23A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3418-23A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5499A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3574-23A>G
  variant of: http://identifiers.org/hgnc/20815
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 10384
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3955
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14364
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3781
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1150
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4826
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ

2-86717991-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86717991
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86717991
    reference: chr 2
allele count: 5
allele frequency: 5.061753391374772e-5
allele num: 98780
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2733-13G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5509G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3418-13G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3574-13G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3574-13G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.1967-13G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000483866
  gene symbol: KDM3A
  hgvsc: ENST00000483866.1:n.402-13G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3574-13G>C
  variant of: http://identifiers.org/hgnc/20815
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4900
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31983
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10803
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5729
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1372
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29954
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10673
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2312
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum

2-86718001-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718001
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718001
    reference: chr 2
allele count: 2
allele frequency: 1.838471862188149e-5
allele num: 108786
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3574-3T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2733-3T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3418-3T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000483866
  gene symbol: KDM3A
  hgvsc: ENST00000483866.1:n.402-3T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.1967-3T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5519T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3574-3T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3574-3T>C
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2611
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6073
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38746
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4586
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1362
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6119
  bin: 2.25e1
  variant carriers: 0
hgvs: c.3574-3T>C
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

2-86718010-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718010
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718010
    reference: chr 2
allele count: 2
allele frequency: 1.745931978490118e-5
allele num: 114552
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3424G>A
  hgvsp: ENSP00000438324.1:p.Glu1142Lys
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5528G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2739G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3580G>A
  hgvsp: ENSP00000386516.1:p.Glu1194Lys
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3580G>A
  hgvsp: ENSP00000386660.1:p.Glu1194Lys
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000483866
  gene symbol: KDM3A
  hgvsc: ENST00000483866.1:n.408G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3580G>A
  hgvsp: ENSP00000323659.5:p.Glu1194Lys
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.1973G>A
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7554
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5253
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3312
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 39704
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu1194Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

2-86718020-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718020
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718020
    reference: chr 2
allele count: 1
allele frequency: 8.496754239880366e-6
allele num: 117692
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5538G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3590G>C
  hgvsp: ENSP00000323659.5:p.Gly1197Ala
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2749G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3590G>C
  hgvsp: ENSP00000386660.1:p.Gly1197Ala
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3434G>C
  hgvsp: ENSP00000438324.1:p.Gly1145Ala
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3590G>C
  hgvsp: ENSP00000386516.1:p.Gly1197Ala
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.1983G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000483866
  gene symbol: KDM3A
  hgvsc: ENST00000483866.1:n.418G>C
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3731
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8337
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1835
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5644
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly1197Ala
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/2-86718032-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718032
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718032
    reference: chr 2
allele count: 4
allele frequency: 3.351768057650411e-5
allele num: 119340
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5550C>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.1995C>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000483866
  gene symbol: KDM3A
  hgvsc: ENST00000483866.1:n.430C>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3446C>A
  hgvsp: ENSP00000438324.1:p.Pro1149Gln
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3602C>A
  hgvsp: ENSP00000386516.1:p.Pro1201Gln
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3602C>A
  hgvsp: ENSP00000323659.5:p.Pro1201Gln
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3602C>A
  hgvsp: ENSP00000386660.1:p.Pro1201Gln
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2761C>A
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9052
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 41836
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5895
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro1201Gln
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

2-86718037-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718037
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718037
    reference: chr 2
allele count: 1
allele frequency: 8.342370901810295e-6
allele num: 119870
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2000G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3607G>A
  hgvsp: ENSP00000386516.1:p.Asp1203Asn
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2766G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3607G>A
  hgvsp: ENSP00000386660.1:p.Asp1203Asn
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3451G>A
  hgvsp: ENSP00000438324.1:p.Asp1151Asn
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3607G>A
  hgvsp: ENSP00000323659.5:p.Asp1203Asn
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5555G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000483866
  gene symbol: KDM3A
  hgvsc: ENST00000483866.1:n.435G>A
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9287
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4316
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41779
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2600
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41603
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp1203Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

2-86718042-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718042
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718042
    reference: chr 2
allele count: 2
allele frequency: 1.664198106142555e-5
allele num: 120178
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2771C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3612C>T
  hgvsp: ENST00000409064.1:c.3612C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000483866
  gene symbol: KDM3A
  hgvsc: ENST00000483866.1:n.440C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3612C>T
  hgvsp: ENST00000409556.1:c.3612C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2005C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3612C>T
  hgvsp: ENST00000312912.5:c.3612C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5560C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3456C>T
  hgvsp: ENST00000542128.1:c.3456C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4470
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3484
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 8.75e1
  variant carriers: 0
hgvs: p.His1204His
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

2-86718048-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718048
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718048
    reference: chr 2
allele count: 2
allele frequency: 1.659503144758459e-5
allele num: 120518
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5566T>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000483866
  gene symbol: KDM3A
  hgvsc: ENST00000483866.1:n.446T>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3618T>G
  hgvsp: ENST00000312912.5:c.3618T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3462T>G
  hgvsp: ENST00000542128.1:c.3462T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3618T>G
  hgvsp: ENST00000409064.1:c.3618T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2777T>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2011T>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3618T>G
  hgvsp: ENST00000409556.1:c.3618T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41597
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2694
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro1206Pro
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

2-86718057-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718057
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718057
    reference: chr 2
allele count: 1
allele frequency: 8.279516476237788e-6
allele num: 120780
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2786T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2020T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3627T>C
  hgvsp: ENST00000409556.1:c.3627T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3627T>C
  hgvsp: ENST00000409064.1:c.3627T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3471T>C
  hgvsp: ENST00000542128.1:c.3471T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3627T>C
  hgvsp: ENST00000312912.5:c.3627T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5575T>C
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9695
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4643
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41551
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1978
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6201
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asp1209Asp
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: T
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

2-86718069-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718069
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718069
    reference: chr 2
allele count: 1
allele frequency: 8.264462809917356e-6
allele num: 121000
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2032T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3639T>C
  hgvsp: ENST00000409556.1:c.3639T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3483T>C
  hgvsp: ENST00000542128.1:c.3483T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3639T>C
  hgvsp: ENST00000312912.5:c.3639T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3639T>C
  hgvsp: ENST00000409064.1:c.3639T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2798T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5587T>C
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41469
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2768
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2006
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Tyr1213Tyr
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD

2-86718075-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718075
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718075
    reference: chr 2
allele count: 1
allele frequency: 8.260230295220631e-6
allele num: 121062
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3489C>T
  hgvsp: ENST00000542128.1:c.3489C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3645C>T
  hgvsp: ENST00000409556.1:c.3645C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2038C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5593C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3645C>T
  hgvsp: ENST00000312912.5:c.3645C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2804C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3645C>T
  hgvsp: ENST00000409064.1:c.3645C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4744
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41439
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2780
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41792
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6260
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp1215Asp
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

2-86718076-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718076
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718076
    reference: chr 2
allele count: 1
allele frequency: 8.259548037531387e-6
allele num: 121072
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3490C>G
  hgvsp: ENSP00000438324.1:p.Arg1164Gly
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2805C>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5594C>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3646C>G
  hgvsp: ENSP00000386660.1:p.Arg1216Gly
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2039C>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3646C>G
  hgvsp: ENSP00000386516.1:p.Arg1216Gly
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3646C>G
  hgvsp: ENSP00000323659.5:p.Arg1216Gly
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9831
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41422
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2016
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2159
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6257
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg1216Gly
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

2-86718076-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718076
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718076
    reference: chr 2
allele count: 1
allele frequency: 8.259548037531387e-6
allele num: 121072
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3646C>T
  hgvsp: ENSP00000386660.1:p.Arg1216Ter
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3646C>T
  hgvsp: ENSP00000323659.5:p.Arg1216Ter
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2039C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3490C>T
  hgvsp: ENSP00000438324.1:p.Arg1164Ter
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3646C>T
  hgvsp: ENSP00000386516.1:p.Arg1216Ter
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5594C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2805C>T
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41422
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9831
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg1216Ter
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

2-86718077-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718077
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718077
    reference: chr 2
allele count: 6
allele frequency: 4.954255705651154e-5
allele num: 121108
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2806G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3647G>A
  hgvsp: ENSP00000323659.5:p.Arg1216Gln
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2040G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3647G>A
  hgvsp: ENSP00000386516.1:p.Arg1216Gln
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3647G>A
  hgvsp: ENSP00000386660.1:p.Arg1216Gln
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3491G>A
  hgvsp: ENSP00000438324.1:p.Arg1164Gln
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5595G>A
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4747
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9837
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2168
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg1216Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/2-86718080-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718080
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718080
    reference: chr 2
allele count: 1
allele frequency: 8.255320554097116e-6
allele num: 121134
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2043C>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3650C>A
  hgvsp: ENSP00000386660.1:p.Ser1217Ter
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3650C>A
  hgvsp: ENSP00000323659.5:p.Ser1217Ter
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3494C>A
  hgvsp: ENSP00000438324.1:p.Ser1165Ter
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2809C>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3650C>A
  hgvsp: ENSP00000386516.1:p.Ser1217Ter
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5598C>A
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41410
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9846
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41796
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2020
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6274
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2794
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser1217Ter
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

2-86718083-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718083
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718083
    reference: chr 2
allele count: 1
allele frequency: 8.253821519363466e-6
allele num: 121156
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3653T>A
  hgvsp: ENSP00000386516.1:p.Leu1218Ter
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3653T>A
  hgvsp: ENSP00000323659.5:p.Leu1218Ter
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2046T>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3497T>A
  hgvsp: ENSP00000438324.1:p.Leu1166Ter
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2812T>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5601T>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3653T>A
  hgvsp: ENSP00000386660.1:p.Leu1218Ter
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4760
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9848
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2796
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2173
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu1218Ter
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: T
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-86718092-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718092
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718092
    reference: chr 2
allele count: 1
allele frequency: 8.249736008447729e-6
allele num: 121216
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3662G>A
  hgvsp: ENSP00000386660.1:p.Arg1221His
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5610G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2821G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3506G>A
  hgvsp: ENSP00000438324.1:p.Arg1169His
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3662G>A
  hgvsp: ENSP00000323659.5:p.Arg1221His
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2055G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3662G>A
  hgvsp: ENSP00000386516.1:p.Arg1221His
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4779
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41438
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2023
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41851
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg1221His
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

2-86718094-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718094
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718094
    reference: chr 2
allele count: 1
allele frequency: 8.248647221855616e-6
allele num: 121232
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2057C>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3664C>G
  hgvsp: ENSP00000386660.1:p.Leu1222Val
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5612C>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2823C>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3508C>G
  hgvsp: ENSP00000438324.1:p.Leu1170Val
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3664C>G
  hgvsp: ENSP00000323659.5:p.Leu1222Val
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3664C>G
  hgvsp: ENSP00000386516.1:p.Leu1222Val
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41443
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2023
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6284
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2181
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2798
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu1222Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

2-86718094-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718094
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718094
    reference: chr 2
allele count: 1
allele frequency: 8.248647221855616e-6
allele num: 121232
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3664C>T
  hgvsp: ENSP00000323659.5:p.Leu1222Phe
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3664C>T
  hgvsp: ENSP00000386516.1:p.Leu1222Phe
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3508C>T
  hgvsp: ENSP00000438324.1:p.Leu1170Phe
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3664C>T
  hgvsp: ENSP00000386660.1:p.Leu1222Phe
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5612C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2823C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2057C>T
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41443
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2798
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6284
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu1222Phe
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

2-86718127-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718127
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718127
    reference: chr 2
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3697A>T
  hgvsp: ENSP00000386516.1:p.Ile1233Phe
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3697A>T
  hgvsp: ENSP00000386660.1:p.Ile1233Phe
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3697A>T
  hgvsp: ENSP00000323659.5:p.Ile1233Phe
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3541A>T
  hgvsp: ENSP00000438324.1:p.Ile1181Phe
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2090A>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5645A>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2856A>T
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9902
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41433
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6291
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile1233Phe
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

2-86718131-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718131
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718131
    reference: chr 2
allele count: 4
allele frequency: 3.297119965709952e-5
allele num: 121318
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3701T>C
  hgvsp: ENSP00000386660.1:p.Val1234Ala
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3545T>C
  hgvsp: ENSP00000438324.1:p.Val1182Ala
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3701T>C
  hgvsp: ENSP00000323659.5:p.Val1234Ala
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3701T>C
  hgvsp: ENSP00000386516.1:p.Val1234Ala
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2094T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5649T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2860T>C
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41422
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9906
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6290
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2801
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2025
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val1234Ala
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum

2-86718135-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718135
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718135
    reference: chr 2
allele count: 1
allele frequency: 8.24279991427488e-6
allele num: 121318
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2864G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3549G>A
  hgvsp: ENST00000542128.1:c.3549G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5653G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3705G>A
  hgvsp: ENST00000409556.1:c.3705G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3705G>A
  hgvsp: ENST00000409064.1:c.3705G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2098G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3705G>A
  hgvsp: ENST00000312912.5:c.3705G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4787
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9910
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2800
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41894
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2187
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gln1235Gln
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum

2-86718162-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718162
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718162
    reference: chr 2
allele count: 2
allele frequency: 1.648750247312537e-5
allele num: 121304
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2125G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3576G>A
  hgvsp: ENST00000542128.1:c.3576G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3732G>A
  hgvsp: ENST00000409064.1:c.3732G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3732G>A
  hgvsp: ENST00000409556.1:c.3732G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2891G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5680G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3732G>A
  hgvsp: ENST00000312912.5:c.3732G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4795
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9924
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41283
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2794
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2185
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro1244Pro
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ

2-86718190-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718190
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718190
    reference: chr 2
allele count: 16
allele frequency: 1.319435281699433e-4
allele num: 121264
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2143+10A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3750+10A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3594+10A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3750+10A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5698+10A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3750+10A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2909+10A>G
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4779
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2781
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6257
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3611
  bin: 9.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: A
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

2-86718193-ACTTTTT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718193
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718187
    reference: chr 2
allele count: 1
allele frequency: 8.246606521416436e-6
allele num: 121262
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3750+18_3750+23delTTCTTT
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3750+18_3750+23delTTCTTT
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2909+18_2909+23delTTCTTT
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5698+18_*5698+23delTTCTTT
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3594+18_3594+23delTTCTTT
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2143+18_2143+23delTTCTTT
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3750+18_3750+23delTTCTTT
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41000
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9911
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2176
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: ACTTTTT
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

2-86718199-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718199
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718199
    reference: chr 2
allele count: 1
allele frequency: 8.248783304462591e-6
allele num: 121230
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3750+19T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3594+19T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5698+19T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2909+19T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2143+19T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3750+19T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3750+19T>C
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9953
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6235
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2783
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD

2-86718207-CTCTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718207
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718203
    reference: chr 2
allele count: 1
allele frequency: 8.250688932525866e-6
allele num: 121202
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5698+29_*5698+32delCTTT
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3750+29_3750+32delCTTT
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2143+29_2143+32delCTTT
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3594+29_3594+32delCTTT
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3750+29_3750+32delCTTT
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3750+29_3750+32delCTTT
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2909+29_2909+32delCTTT
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10002
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41170
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2789
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: CTCTT
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum

2-86718209-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718209
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718209
    reference: chr 2
allele count: 1
allele frequency: 8.250416646040625e-6
allele num: 121206
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3750+29C>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2143+29C>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5698+29C>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3594+29C>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2909+29C>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3750+29C>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3750+29C>G
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9996
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6236
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2012
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

2-86718209-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718209
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718209
    reference: chr 2
allele count: 113
allele frequency: 9.322970810025906e-4
allele num: 121206
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2143+29C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5698+29C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3594+29C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3750+29C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3750+29C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2909+29C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3750+29C>T
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4808
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 9996
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 40727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2778
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2012
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6236
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

2-86718218-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718218
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718218
    reference: chr 2
allele count: 1
allele frequency: 8.250688932525866e-6
allele num: 121202
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5698+38A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3594+38A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2909+38A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2143+38A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3750+38A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3750+38A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3750+38A>G
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10053
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4814
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2781
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3687
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD

2-86718222-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718222
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718222
    reference: chr 2
allele count: 2
allele frequency: 1.649865535958819e-5
allele num: 121222
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2909+42A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2143+42A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3750+42A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5698+42A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3594+42A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3750+42A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3750+42A>G
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40705
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10071
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3689
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6281
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41331
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2173
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum

2-86718227-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718227
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718227
    reference: chr 2
allele count: 1
allele frequency: 8.249463784853985e-6
allele num: 121220
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2910-37T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3751-37T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5699-37T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3751-37T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3751-37T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2144-37T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3595-37T>C
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40675
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4837
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10091
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41323
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2784
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP

2-86718228-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718228
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718228
    reference: chr 2
allele count: 2
allele frequency: 1.649947201689546e-5
allele num: 121216
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2144-36G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3751-36G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3751-36G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5699-36G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3751-36G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3595-36G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2910-36G>C
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10096
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40666
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4843
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41317
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2012
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

2-86718230-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718230
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718230
    reference: chr 2
allele count: 1
allele frequency: 8.250280509537325e-6
allele num: 121208
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3595-34G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3751-34G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2144-34G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5699-34G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2910-34G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3751-34G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3751-34G>A
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40651
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10117
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4832
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6284
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2016
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2180
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41293
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/2-86718237-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718237
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718236
    reference: chr 2
allele count: 2
allele frequency: 1.650246711883427e-5
allele num: 121194
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3751-26delC
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2144-26delC
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3751-26delC
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3595-26delC
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5699-26delC
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2910-26delC
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3751-26delC
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4828
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40641
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41351
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2184
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3690
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: AC
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD

2-86718243-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718243
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718243
    reference: chr 2
allele count: 1
allele frequency: 8.252323028932645e-6
allele num: 121178
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2144-21A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2910-21A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3751-21A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3595-21A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3751-21A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5699-21A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3751-21A>G
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40660
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2783
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2182
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

2-86718244-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718244
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718244
    reference: chr 2
allele count: 171
allele frequency: 1.410937654708076e-3
allele num: 121196
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3595-20T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5699-20T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3751-20T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2144-20T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2910-20T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3751-20T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3751-20T>C
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 9.75e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 10140
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40556
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4812
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2776
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2172
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3844
  bin: 9.75e1
  variant carriers: 170
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD

2-86718253-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718253
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718253
    reference: chr 2
allele count: 1
allele frequency: 8.251778258214646e-6
allele num: 121186
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2144-11G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3595-11G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3751-11G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3751-11G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3751-11G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5699-11G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2910-11G>A
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40572
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10181
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6292
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3807
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41359
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2012
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP

2-86718276-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718276
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718276
    reference: chr 2
allele count: 22
allele frequency: 1.815600963919057e-4
allele num: 121172
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3763T>C
  hgvsp: ENSP00000386660.1:p.Tyr1255His
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3763T>C
  hgvsp: ENSP00000323659.5:p.Tyr1255His
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3763T>C
  hgvsp: ENSP00000386516.1:p.Tyr1255His
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2156T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5711T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3607T>C
  hgvsp: ENSP00000438324.1:p.Tyr1203His
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2922T>C
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40604
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4825
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10206
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6292
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3825
  bin: 9.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1006
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2772
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2170
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Tyr1255His
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

2-86718296-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718296
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718296
    reference: chr 2
allele count: 370
allele frequency: 3.052956416984339e-3
allele num: 121194
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3627T>G
  hgvsp: ENST00000542128.1:c.3627T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2176T>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3783T>G
  hgvsp: ENST00000409064.1:c.3783T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3783T>G
  hgvsp: ENST00000409556.1:c.3783T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5731T>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3783T>G
  hgvsp: ENST00000312912.5:c.3783T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2942T>G
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40411
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4786
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 9.75e1
  variant carriers: 145
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 10147
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 4156
  bin: 9.75e1
  variant carriers: 370
genotype quality: GenotypeQuality
  all individuals: 2746
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41284
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala1261Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ

2-86718310-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718310
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718310
    reference: chr 2
allele count: 1
allele frequency: 8.251642076773278e-6
allele num: 121188
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2956C>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5745C>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3797C>G
  hgvsp: ENSP00000386660.1:p.Ser1266Cys
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3641C>G
  hgvsp: ENSP00000438324.1:p.Ser1214Cys
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3797C>G
  hgvsp: ENSP00000323659.5:p.Ser1266Cys
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2190C>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3797C>G
  hgvsp: ENSP00000386516.1:p.Ser1266Cys
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40431
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6261
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2148
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41316
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2001
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser1266Cys
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

2-86718314-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718314
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718314
    reference: chr 2
allele count: 1
allele frequency: 8.25218682950982e-6
allele num: 121180
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2194A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3801A>G
  hgvsp: ENST00000312912.5:c.3801A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3801A>G
  hgvsp: ENST00000409556.1:c.3801A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5749A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3645A>G
  hgvsp: ENST00000542128.1:c.3645A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2960A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3801A>G
  hgvsp: ENST00000409064.1:c.3801A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4792
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10164
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6260
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro1267Pro
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum

2-86718317-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718317
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718317
    reference: chr 2
allele count: 1
allele frequency: 8.253276550790664e-6
allele num: 121164
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3648G>C
  hgvsp: ENSP00000438324.1:p.Glu1216Asp
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5752G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2963G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3804G>C
  hgvsp: ENSP00000386516.1:p.Glu1268Asp
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3804G>C
  hgvsp: ENSP00000386660.1:p.Glu1268Asp
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3804G>C
  hgvsp: ENSP00000323659.5:p.Glu1268Asp
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2197G>C
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4795
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40429
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2001
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu1268Asp
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum

2-86718320-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718320
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718320
    reference: chr 2
allele count: 6
allele frequency: 4.951965930474398e-5
allele num: 121164
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3807T>C
  hgvsp: ENST00000409556.1:c.3807T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3651T>C
  hgvsp: ENST00000542128.1:c.3651T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3807T>C
  hgvsp: ENST00000409064.1:c.3807T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5755T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2966T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3807T>C
  hgvsp: ENST00000312912.5:c.3807T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2200T>C
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40422
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4794
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4101
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 41302
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
hgvs: p.His1269His
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD

2-86718321-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86718321
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86718321
    reference: chr 2
allele count: 1
allele frequency: 8.253140319891718e-6
allele num: 121166
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.3652G>A
  hgvsp: ENSP00000438324.1:p.Val1218Ile
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.*5756G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.3808G>A
  hgvsp: ENSP00000323659.5:p.Val1270Ile
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.3808G>A
  hgvsp: ENSP00000386660.1:p.Val1270Ile
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000491383
  gene symbol: KDM3A
  hgvsc: ENST00000491383.1:n.2967G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000470160
  gene symbol: KDM3A
  hgvsc: ENST00000470160.1:n.2201G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.3808G>A
  hgvsp: ENSP00000386516.1:p.Val1270Ile
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40423
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4795
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4099
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6258
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val1270Ile
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
reference allele: G

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2563
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1872
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8135
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2830
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35103
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3169
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504302304591131e-5
allele num: 66476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16150
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.467e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.189e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e0

MQRankSum
type: SiteQuality
SIO_000300: -1.477e0

QD
type: SiteQuality
SIO_000300: 1.376e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.116e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.0e-2

DP
type: SiteQuality
SIO_000300: 2.816623e6

GenotypeQuality
all individuals: 35107
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 87
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8818
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1871
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1882
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2754
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2833
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3201
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.464875523786049e-4
allele num: 16228
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.216e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.68e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

FS
type: SiteQuality
SIO_000300: 3.714e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.5e-2

DP
type: SiteQuality
SIO_000300: 2.822883e6

MQ
type: SiteQuality
SIO_000300: 5.953e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.42e0

GenotypeQuality
all individuals: 1857
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9043
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1886
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2835
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2756
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35102
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16278
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.72e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.926e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.93e-1

QD
type: SiteQuality
SIO_000300: 1.452e1

DP
type: SiteQuality
SIO_000300: 2.826751e6

MQ
type: SiteQuality
SIO_000300: 5.869e1

GenotypeQuality
all individuals: 140
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1852
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2573
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3202
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1889
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2762
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35103
bin: 9.75e1
variant carriers: 4

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.507346975570179e-5
allele num: 66558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.99e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

QD
type: SiteQuality
SIO_000300: 1.563e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

FS
type: SiteQuality
SIO_000300: 1.744e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.84e-1

DP
type: SiteQuality
SIO_000300: 2.829594e6

GenotypeQuality
all individuals: 3219
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35101
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1889
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1855
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2841
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.004988280545706e-5
allele num: 66556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16322
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.161170459823502e-4
allele num: 8612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.179e1

MQ
type: SiteQuality
SIO_000300: 5.928e1

VQSLOD
type: SiteQuality
SIO_000300: 6.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.77e-1

FS
type: SiteQuality
SIO_000300: 1.885e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.34e-1

DP
type: SiteQuality
SIO_000300: 2.830305e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

GenotypeQuality
all individuals: 2845
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35108
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 9853
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1892
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2571
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1879
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3257
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2782
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002552169343942e-5
allele num: 66610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

FS
type: SiteQuality
SIO_000300: 9.071e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.394e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

QD
type: SiteQuality
SIO_000300: 1.221e1

DP
type: SiteQuality
SIO_000300: 2.835454e6

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

VQSLOD
type: SiteQuality
SIO_000300: -4.205e-1

MQ
type: SiteQuality
SIO_000300: 5.983e1

GenotypeQuality
all individuals: 1895
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2581
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9894
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2845
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3268
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2784
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35109
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 38
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002462018855461e-5
allele num: 66612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.904e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.39e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.07e-1

FS
type: SiteQuality
SIO_000300: 1.765e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.09e0

DP
type: SiteQuality
SIO_000300: 2.835499e6

QD
type: SiteQuality
SIO_000300: 1.351e1

GenotypeQuality
all individuals: 189
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9908
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2786
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2846
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3265
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1881
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35107
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2580
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501185936890143e-5
allele num: 66614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16384
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.111e1

DP
type: SiteQuality
SIO_000300: 2.835771e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

FS
type: SiteQuality
SIO_000300: 6.711e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.516e0

MQRankSum
type: SiteQuality
SIO_000300: -9.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.350000000000001e-1

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3273
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2846
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1885
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2581
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9906
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35107
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2786
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.100536847242558e-5
allele num: 16392
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.115e0

FS
type: SiteQuality
SIO_000300: 8.76e-1

DP
type: SiteQuality
SIO_000300: 2.835818e6

VQSLOD
type: SiteQuality
SIO_000300: 2.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.8e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.86e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.498e1

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1894
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35110
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 9942
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3268
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2575
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2786
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.502881844380403e-5
allele num: 66624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.024803387779795e-4
allele num: 6612
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.511e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-1

QD
type: SiteQuality
SIO_000300: 1.323e1

VQSLOD
type: SiteQuality
SIO_000300: 3.34e0

DP
type: SiteQuality
SIO_000300: 2.836181e6

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1877
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2787
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35111
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2846
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.223840411210378e-4
allele num: 16342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e0

QD
type: SiteQuality
SIO_000300: 1.191e1

MQRankSum
type: SiteQuality
SIO_000300: -5.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.054e0

FS
type: SiteQuality
SIO_000300: 1.751e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 2.835916e6

GenotypeQuality
all individuals: 56
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2787
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9179
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2845
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2554
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1852
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3202
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.008514094888535e-5
allele num: 66478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.287726358148894e-5
allele num: 15904
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.07e-1

FS
type: SiteQuality
SIO_000300: 2.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.422e0

MQRankSum
type: SiteQuality
SIO_000300: 2.07e-1

QD
type: SiteQuality
SIO_000300: 2.472e1

VQSLOD
type: SiteQuality
SIO_000300: -2.545e0

DP
type: SiteQuality
SIO_000300: 2.82788e6

GenotypeQuality
all individuals: 25
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3210
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 779
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9125
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35113
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 67
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1849
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1890
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.297229219143577e-5
allele num: 15880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66474
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

FS
type: SiteQuality
SIO_000300: 1.053e0

VQSLOD
type: SiteQuality
SIO_000300: -1.73e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.44e-1

DP
type: SiteQuality
SIO_000300: 2.82646e6

QD
type: SiteQuality
SIO_000300: 1.606e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.664e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1890
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8058
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35110
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1838
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2787
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2546
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2845
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66212
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.810789e6

FS
type: SiteQuality
SIO_000300: 1.875e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.738e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.85e-1

QD
type: SiteQuality
SIO_000300: 1.285e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.86e-1

GenotypeQuality
all individuals: 75
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7415
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2784
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3065
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2540
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2838
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35140
bin: 9.75e1
variant carriers: 79

GenotypeQuality
all individuals: 109
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66124
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.337077149351518e-4
allele num: 14958
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

East Asian
type: Population
allele count: 77
allele frequency: 8.951406649616368e-3
allele num: 8602
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.79e0

QD
type: SiteQuality
SIO_000300: 1.367e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.45e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

DP
type: SiteQuality
SIO_000300: 2.805352e6

MQ
type: SiteQuality
SIO_000300: 5.949e1

GenotypeQuality
all individuals: 276
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2778
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5525
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35110
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2843
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2936
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1886
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523879186858066e-5
allele num: 65622
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13578
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.135e0

MQRankSum
type: SiteQuality
SIO_000300: -2.19e-1

DP
type: SiteQuality
SIO_000300: 2.770636e6

FS
type: SiteQuality
SIO_000300: 2.108e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.89e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

QD
type: SiteQuality
SIO_000300: 1.178e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.016e0

VQSLOD
type: SiteQuality
SIO_000300: 3.25e-1

GenotypeQuality
all individuals: 647
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35109
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 82
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5019
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2839
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2775
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2872
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3404
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1885
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2520
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65332
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12808
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.680542110358181e-5
allele num: 10330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.609e0

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

QD
type: SiteQuality
SIO_000300: 1.285e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

DP
type: SiteQuality
SIO_000300: 2.759038e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-1

MQ
type: SiteQuality
SIO_000300: 5.931e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.91e-1

GenotypeQuality
all individuals: 86
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4953
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1786
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35160
bin: 9.75e1
variant carriers: 130

GenotypeQuality
all individuals: 2834
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1883
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2773
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 5
allele frequency: 4.342539517109606e-4
allele num: 11514
num of homozygotes: 0

African
type: Population
allele count: 126
allele frequency: 1.220457187136769e-2
allele num: 10324
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.532520076012996e-5
allele num: 65252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.4e0

DP
type: SiteQuality
SIO_000300: 2.760883e6

MQ
type: SiteQuality
SIO_000300: 5.973e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.21e0

FS
type: SiteQuality
SIO_000300: 3.022e0

MQRankSum
type: SiteQuality
SIO_000300: 2.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-2

QD
type: SiteQuality
SIO_000300: 1.173e1

GenotypeQuality
all individuals: 612
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2183
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4147
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1771
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2501
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 691
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35106
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64914
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.70170553428472e-5
allele num: 11492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.036e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.26e0

DP
type: SiteQuality
SIO_000300: 2.74788e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.47e0

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

QD
type: SiteQuality
SIO_000300: 1.764e1

VQSLOD
type: SiteQuality
SIO_000300: 5.7e-2

GenotypeQuality
all individuals: 1884
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 742
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1075
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1773
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4032
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2500
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 265
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 5.226480836236934e-4
allele num: 11480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64898
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.539e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

QD
type: SiteQuality
SIO_000300: 1.25e1

VQSLOD
type: SiteQuality
SIO_000300: 2.62e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

DP
type: SiteQuality
SIO_000300: 2.747643e6

GenotypeQuality
all individuals: 35113
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 265
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2730
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1773
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2095
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2772
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2500
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2835
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.710801393728223e-5
allele num: 11480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.540879534038029e-5
allele num: 64898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.747643e6

FS
type: SiteQuality
SIO_000300: 1.539e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.62e0

MQRankSum
type: SiteQuality
SIO_000300: 1.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

QD
type: SiteQuality
SIO_000300: 1.25e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1730
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2834
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1515
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 839
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1881
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2523
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2770
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2477
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.543591010125957e-5
allele num: 64784
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11096
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.591e0

FS
type: SiteQuality
SIO_000300: 6.506e0

VQSLOD
type: SiteQuality
SIO_000300: 4.88e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

DP
type: SiteQuality
SIO_000300: 2.747288e6

MQ
type: SiteQuality
SIO_000300: 5.964e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

QD
type: SiteQuality
SIO_000300: 1.416e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.1e-1

GenotypeQuality
all individuals: 1388
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2401
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8972
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3967
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3334
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3134
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 582
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 266
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5426
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.376990729736154e-4
allele num: 8414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45992
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7750
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.42e0

FS
type: SiteQuality
SIO_000300: 4.102e0

VQSLOD
type: SiteQuality
SIO_000300: 9.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 9.38229e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 7.81e0

GenotypeQuality
all individuals: 574
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15155
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 836
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9764
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2014
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 845
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5371
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8585
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.038637307852098e-4
allele num: 9628
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5662
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7934
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46848
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.016e0

QD
type: SiteQuality
SIO_000300: 8.199999999999999e0

DP
type: SiteQuality
SIO_000300: 9.93938e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.2e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.19e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

GenotypeQuality
all individuals: 479
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4443
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2236
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1159
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 923
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15223
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5822
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9950
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8142
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.094679514034353e-5
allele num: 47740
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.037e0

VQSLOD
type: SiteQuality
SIO_000300: -1.676e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.78e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.829e1

QD
type: SiteQuality
SIO_000300: 1.323e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.78e-1

DP
type: SiteQuality
SIO_000300: 1.054449e6

GenotypeQuality
all individuals: 893
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2484
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3177
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14050
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 801
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3045
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22550
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5722
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.990762860328078e-5
allele num: 50232
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 716
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10754
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8748
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.98e-1

QD
type: SiteQuality
SIO_000300: 1.034e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.66e-1

DP
type: SiteQuality
SIO_000300: 1.154243e6

MQRankSum
type: SiteQuality
SIO_000300: -1.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.37e0

VQSLOD
type: SiteQuality
SIO_000300: -2.861e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.797e1

GenotypeQuality
all individuals: 98
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2671
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 922
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3594
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3199
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1367
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1070
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 9.231564565562571e-5
allele num: 54162
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5988
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6942
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11988
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.14e-1

DP
type: SiteQuality
SIO_000300: 1.265476e6

MQRankSum
type: SiteQuality
SIO_000300: -6.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

FS
type: SiteQuality
SIO_000300: 3.036e0

QD
type: SiteQuality
SIO_000300: 1.263e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.55e-1

GenotypeQuality
all individuals: 1137
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3238
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 474
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1048
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1741
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37249
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1163
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6272
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9836
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.457159069415548e-5
allele num: 10574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59698
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.233796296296296e-5
allele num: 13824
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7750
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.483e1

DP
type: SiteQuality
SIO_000300: 1.385114e6

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.71e-1

FS
type: SiteQuality
SIO_000300: 6.791e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3366
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1418
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2111
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1695
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15016
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6458
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.460629921259842e-4
allele num: 8128
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11052
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10150
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.117e0

QD
type: SiteQuality
SIO_000300: 1.268e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

VQSLOD
type: SiteQuality
SIO_000300: 1.69e-1

DP
type: SiteQuality
SIO_000300: 1.454317e6

GenotypeQuality
all individuals: 226
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3385
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1620
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40960
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2373
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1858
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11256
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.201056930098487e-4
allele num: 8326
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15768
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.915e1

DP
type: SiteQuality
SIO_000300: 1.493798e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.525e0

QD
type: SiteQuality
SIO_000300: 1.105e1

VQSLOD
type: SiteQuality
SIO_000300: 2.72e-1

FS
type: SiteQuality
SIO_000300: 1.465e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.404e0

MQRankSum
type: SiteQuality
SIO_000300: 3.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 3434
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 159
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41298
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1998
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1777
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2526
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8440
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16200
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.669309611293753e-5
allele num: 10342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.57679868188198e-5
allele num: 65548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11360
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.694e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.3e-2

MQ
type: SiteQuality
SIO_000300: 5.923e1

QD
type: SiteQuality
SIO_000300: 1.593e1

DP
type: SiteQuality
SIO_000300: 1.519638e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.927e0

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

GenotypeQuality
all individuals: 753
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2043
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3462
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1833
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6015
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51846452866861e-5
allele num: 65856
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16324
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.04e-1

QD
type: SiteQuality
SIO_000300: 1.155e1

DP
type: SiteQuality
SIO_000300: 1.528268e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.888e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

VQSLOD
type: SiteQuality
SIO_000300: -6.692e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.492e0

GenotypeQuality
all individuals: 143
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2653
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 940
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6064
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41538
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2091
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1886
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.029017992366875e-5
allele num: 66028
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.357e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.74e0

QD
type: SiteQuality
SIO_000300: 1.35e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.56e-1

FS
type: SiteQuality
SIO_000300: 1.167e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e-1

DP
type: SiteQuality
SIO_000300: 1.535167e6

GenotypeQuality
all individuals: 3510
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6161
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1943
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 963
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2113
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41719
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.018959062915107e-5
allele num: 66248
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.857e0

MQ
type: SiteQuality
SIO_000300: 5.904e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e-1

QD
type: SiteQuality
SIO_000300: 1.205e1

MQRankSum
type: SiteQuality
SIO_000300: -7.16e-1

FS
type: SiteQuality
SIO_000300: 6.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.56e-1

DP
type: SiteQuality
SIO_000300: 1.540509e6

VQSLOD
type: SiteQuality
SIO_000300: 1.25e-1

GenotypeQuality
all individuals: 35
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2129
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3528
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 982
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2739
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41746
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505842669557885e-5
allele num: 66408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.544995e6

QD
type: SiteQuality
SIO_000300: 1.578e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 6.32e0

MQRankSum
type: SiteQuality
SIO_000300: -5.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.34e-1

FS
type: SiteQuality
SIO_000300: 1.039e0

VQSLOD
type: SiteQuality
SIO_000300: 4.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6255
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41760
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3545
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2149
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 992
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-2

QD
type: SiteQuality
SIO_000300: 1.748e1

DP
type: SiteQuality
SIO_000300: 1.549298e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.958e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.36e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

VQSLOD
type: SiteQuality
SIO_000300: 2.08e-1

GenotypeQuality
all individuals: 3551
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 154
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 995
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2160
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2015
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501862309263487e-5
allele num: 66584
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

DP
type: SiteQuality
SIO_000300: 1.550974e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e0

VQSLOD
type: SiteQuality
SIO_000300: -1.53e0

MQ
type: SiteQuality
SIO_000300: 5.87e1

QD
type: SiteQuality
SIO_000300: 1.686e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.257e0

FS
type: SiteQuality
SIO_000300: 2.823e0

MQRankSum
type: SiteQuality
SIO_000300: 6.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.899e0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2780
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3554
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 41758
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501681883709755e-5
allele num: 66592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.363e1

VQSLOD
type: SiteQuality
SIO_000300: 8.71e-1

FS
type: SiteQuality
SIO_000300: 4.104e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.79e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

DP
type: SiteQuality
SIO_000300: 1.551883e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.25e-1

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2016
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41758
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2159
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3554
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6257
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2780
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501681883709755e-5
allele num: 66592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.104e0

QD
type: SiteQuality
SIO_000300: 1.363e1

DP
type: SiteQuality
SIO_000300: 1.551883e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.79e0

VQSLOD
type: SiteQuality
SIO_000300: 8.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

GenotypeQuality
all individuals: 41766
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2789
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3575
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2016
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6267
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.008197459688316e-5
allele num: 66606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.389999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.27e1

DP
type: SiteQuality
SIO_000300: 1.552539e6

FS
type: SiteQuality
SIO_000300: 3.738e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.83e0

MQRankSum
type: SiteQuality
SIO_000300: 5.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.11e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1001
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2169
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3584
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 796
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501095799933952e-5
allele num: 66618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.236e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.613e0

VQSLOD
type: SiteQuality
SIO_000300: 6.63e-1

DP
type: SiteQuality
SIO_000300: 1.552983e6

MQ
type: SiteQuality
SIO_000300: 5.974e1

FS
type: SiteQuality
SIO_000300: 6.07e0

MQRankSum
type: SiteQuality
SIO_000300: 4.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

GenotypeQuality
all individuals: 105
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3585
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41805
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1003
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6270
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2021
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.761e1

FS
type: SiteQuality
SIO_000300: 4.987e0

DP
type: SiteQuality
SIO_000300: 1.553303e6

QD
type: SiteQuality
SIO_000300: 7.7e0

MQRankSum
type: SiteQuality
SIO_000300: 4.47e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.557e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 8.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.025e0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6283
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2798
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3587
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2179
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1007
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499970000599988e-5
allele num: 66668
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.82e-1

DP
type: SiteQuality
SIO_000300: 1.554181e6

FS
type: SiteQuality
SIO_000300: 2.899e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.98e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.401e1

VQSLOD
type: SiteQuality
SIO_000300: 7.87e-1

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3589
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 798
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1006
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41864
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160631383472609e-4
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66676
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.228e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -6.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.54e-1

DP
type: SiteQuality
SIO_000300: 1.554495e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.38e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-3

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2181
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3589
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1006
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41864
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2023
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 798
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499790029395885e-5
allele num: 66676
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.554495e6

QD
type: SiteQuality
SIO_000300: 1.228e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -6.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.54e-1

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41908
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2025
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1006
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3592
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 799
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2801
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2187
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157675387821255e-4
allele num: 8638
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.864e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.687e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

MQRankSum
type: SiteQuality
SIO_000300: -8.159999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.6e-1

DP
type: SiteQuality
SIO_000300: 1.555495e6

QD
type: SiteQuality
SIO_000300: 7.4e0

VQSLOD
type: SiteQuality
SIO_000300: -1.259e0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41903
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2187
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1006
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3593
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.732501732501733e-4
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.202643171806168e-3
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.86e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.4e0

FS
type: SiteQuality
SIO_000300: 1.118e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.47e0

QD
type: SiteQuality
SIO_000300: 1.371e1

DP
type: SiteQuality
SIO_000300: 1.556135e6

MQ
type: SiteQuality
SIO_000300: 5.973e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.25e0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1006
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6291
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2026
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3593
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499160470136723e-5
allele num: 66704
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.555731e6

MQRankSum
type: SiteQuality
SIO_000300: 7.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.234e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

QD
type: SiteQuality
SIO_000300: 1.057e1

MQ
type: SiteQuality
SIO_000300: 5.988e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e-2

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41761
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6280
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2022
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3597
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1006
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.88e-1

QD
type: SiteQuality
SIO_000300: 1.475e1

VQSLOD
type: SiteQuality
SIO_000300: 8.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.98e-1

FS
type: SiteQuality
SIO_000300: 5.23e-1

DP
type: SiteQuality
SIO_000300: 1.555601e6

MQ
type: SiteQuality
SIO_000300: 5.982e1

GenotypeQuality
all individuals: 2013
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2174
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41371
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 16
allele frequency: 1.541128876902331e-3
allele num: 10382
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

VQSLOD
type: SiteQuality
SIO_000300: 4.8e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-2

QD
type: SiteQuality
SIO_000300: 1.435e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e-1

DP
type: SiteQuality
SIO_000300: 1.554608e6

GenotypeQuality
all individuals: 61
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6253
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2782
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41327
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3607
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1005
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.635767970707265e-5
allele num: 10378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.6e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.472e0

MQ
type: SiteQuality
SIO_000300: 5.105e1

DP
type: SiteQuality
SIO_000300: 1.553995e6

FS
type: SiteQuality
SIO_000300: 2.527e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 40971
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2015
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2164
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 798
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3607
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66662
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.13e-1

FS
type: SiteQuality
SIO_000300: 3.093e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

VQSLOD
type: SiteQuality
SIO_000300: -7.297e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.7e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.198e0

MQ
type: SiteQuality
SIO_000300: 5.872e1

DP
type: SiteQuality
SIO_000300: 1.553548e6

QD
type: SiteQuality
SIO_000300: 1.497e1

GenotypeQuality
all individuals: 199
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3609
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2171
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6239
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2015
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66664
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.98e-1

MQ
type: SiteQuality
SIO_000300: 5.64e1

VQSLOD
type: SiteQuality
SIO_000300: 2.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.824e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

DP
type: SiteQuality
SIO_000300: 1.554152e6

QD
type: SiteQuality
SIO_000300: 1.497e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.31e-1

GenotypeQuality
all individuals: 2778
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41193
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2168
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3708
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 796
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.063545961678389e-5
allele num: 16492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66660
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.483e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

FS
type: SiteQuality
SIO_000300: 5.19e-1

DP
type: SiteQuality
SIO_000300: 1.562778e6

VQSLOD
type: SiteQuality
SIO_000300: 4.34e0

QD
type: SiteQuality
SIO_000300: 1.389e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.83e-1

GenotypeQuality
all individuals: 113
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41193
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3708
bin: 9.75e1
variant carriers: 113

GenotypeQuality
all individuals: 72
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2168
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 4
allele frequency: 3.862495171881035e-4
allele num: 10356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 99
allele frequency: 1.485148514851485e-3
allele num: 66660
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212709192335678e-4
allele num: 16492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.333506673600277e-4
allele num: 11538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.539951573849879e-4
allele num: 6608
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.19e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.34e0

MQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.972e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.483e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.15e-1

QD
type: SiteQuality
SIO_000300: 1.389e1

DP
type: SiteQuality
SIO_000300: 1.562778e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.83e-1

GenotypeQuality
all individuals: 2171
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1007
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41327
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2015
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6268
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.667013347200555e-5
allele num: 11538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66664
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.68e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.324e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.41e-1

FS
type: SiteQuality
SIO_000300: 5.723e0

DP
type: SiteQuality
SIO_000300: 1.558787e6

QD
type: SiteQuality
SIO_000300: 1.543e1

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2780
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2012
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1007
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 799
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66666
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.042e0

DP
type: SiteQuality
SIO_000300: 1.558927e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.49e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.7e-1

QD
type: SiteQuality
SIO_000300: 1.383e1

FS
type: SiteQuality
SIO_000300: 2.803e0

MQ
type: SiteQuality
SIO_000300: 4.725e1

MQRankSum
type: SiteQuality
SIO_000300: -1.502e0

GenotypeQuality
all individuals: 184
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2018
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3687
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1007
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6286
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2178
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499925003749813e-5
allele num: 66670
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.736e0

VQSLOD
type: SiteQuality
SIO_000300: -3.407e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.919e0

QD
type: SiteQuality
SIO_000300: 2.035e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.519e0

MQ
type: SiteQuality
SIO_000300: 4.54e1

FS
type: SiteQuality
SIO_000300: 1.2566e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.97e0

DP
type: SiteQuality
SIO_000300: 1.559349e6

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3688
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 799
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6285
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2179
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2783
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.934235976789168e-4
allele num: 10340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66672
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.967e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.364e0

MQRankSum
type: SiteQuality
SIO_000300: -4.81e-1

DP
type: SiteQuality
SIO_000300: 1.559718e6

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

QD
type: SiteQuality
SIO_000300: 1.491e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.926e0

GenotypeQuality
all individuals: 2785
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3689
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 172
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1008
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500015000150001e-5
allele num: 66666
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-1

FS
type: SiteQuality
SIO_000300: 4.144e0

DP
type: SiteQuality
SIO_000300: 1.559482e6

MQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.379999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 4.759e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.581e0

QD
type: SiteQuality
SIO_000300: 1.361e1

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2780
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2010
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 795
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6296
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66664
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211680600993578e-4
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.92e-1

FS
type: SiteQuality
SIO_000300: 2.341e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.51e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.55975e6

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-2

QD
type: SiteQuality
SIO_000300: 1.67e1

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41391
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2014
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3690
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6306
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1008
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66662
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.91e0

FS
type: SiteQuality
SIO_000300: 3.532e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.75e-1

QD
type: SiteQuality
SIO_000300: 1.409e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.95e-1

DP
type: SiteQuality
SIO_000300: 1.560208e6

MQ
type: SiteQuality
SIO_000300: 5.923e1

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41273
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 791
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6284
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2013
bin: 8.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 158
allele frequency: 2.370023700237002e-3
allele num: 66666
num of homozygotes: 1

Latino
type: Population
allele count: 4
allele frequency: 3.465003465003465e-4
allele num: 11544
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.055101422948834e-4
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.872966692486445e-4
allele num: 10328
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

MQ
type: SiteQuality
SIO_000300: 5.976e1

DP
type: SiteQuality
SIO_000300: 1.572954e6

VQSLOD
type: SiteQuality
SIO_000300: 5.84e0

QD
type: SiteQuality
SIO_000300: 1.546e1

GenotypeQuality
all individuals: 2173
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1008
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2778
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66668
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.629999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

MQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

QD
type: SiteQuality
SIO_000300: 1.139e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.52e-1

FS
type: SiteQuality
SIO_000300: 7.972e0

DP
type: SiteQuality
SIO_000300: 1.567209e6

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 795
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41460
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2014
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 20
allele frequency: 2.999400119976005e-4
allele num: 66680
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.670019074041963e-5
allele num: 11534
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.703085581214826e-5
allele num: 10306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.75e0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

FS
type: SiteQuality
SIO_000300: 5.18e-1

QD
type: SiteQuality
SIO_000300: 1.435e1

DP
type: SiteQuality
SIO_000300: 1.56959e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.94e-1

GenotypeQuality
all individuals: 133
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2149
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6253
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1001
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1996
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 301
allele frequency: 4.513826405134665e-3
allele num: 66684
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.699321047526673e-5
allele num: 10310
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.668515950069348e-5
allele num: 11536
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.311258278145695e-3
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 64
allele frequency: 9.685230024213076e-3
allele num: 6608
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.91e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.42e-1

DP
type: SiteQuality
SIO_000300: 1.596261e6

MQRankSum
type: SiteQuality
SIO_000300: 4.09e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.274e0

QD
type: SiteQuality
SIO_000300: 1.321e1

MQ
type: SiteQuality
SIO_000300: 5.976e1

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2745
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4093
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 795
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499880009599232e-5
allele num: 66672
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

FS
type: SiteQuality
SIO_000300: 1.2656e1

MQ
type: SiteQuality
SIO_000300: 5.927e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.582527e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.191e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.13e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.835e0

MQRankSum
type: SiteQuality
SIO_000300: 7.75e-1

QD
type: SiteQuality
SIO_000300: 1.257e1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2001
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41310
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4094
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 143
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2145
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2747
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.582433e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.31e-1

QD
type: SiteQuality
SIO_000300: 1.453e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.17e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.264e-1

MQ
type: SiteQuality
SIO_000300: 5.904e1

MQRankSum
type: SiteQuality
SIO_000300: -1.187e0

GenotypeQuality
all individuals: 1007
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2744
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4095
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6257
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41325
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499925003749813e-5
allele num: 66670
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.699e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.494e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.57e-1

MQ
type: SiteQuality
SIO_000300: 5.904e1

DP
type: SiteQuality
SIO_000300: 1.582518e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.118e0

FS
type: SiteQuality
SIO_000300: 3.049e0

QD
type: SiteQuality
SIO_000300: 1.767e1

MQRankSum
type: SiteQuality
SIO_000300: -2.07e0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2145
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2002
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6256
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1007
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2742
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 6
allele frequency: 5.815080441946114e-4
allele num: 10318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66662
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.07e-1

FS
type: SiteQuality
SIO_000300: 5.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.967e1

VQSLOD
type: SiteQuality
SIO_000300: 2.06e0

MQRankSum
type: SiteQuality
SIO_000300: -2.49e-1

DP
type: SiteQuality
SIO_000300: 1.582988e6

QD
type: SiteQuality
SIO_000300: 1.288e1

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41316
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1007
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2148
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2001
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2742
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0