3-132361590-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132361590
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132361590
    reference: chr 3
allele count: 14
allele frequency: 1.155344292599195e-4
allele num: 121176
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.637C>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.306C>A
  hgvsp: ENST00000481970.2:c.306C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-12188C>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.306C>A
  hgvsp: ENST00000485198.1:c.306C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.306C>A
  hgvsp: ENST00000355458.3:c.306C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*2132C>A
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.306C>A
  hgvsp: ENST00000264990.6:c.306C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.204C>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-903C>A
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3028
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7985
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10033
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6119
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10410
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18767
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro102Pro
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

3-132361592-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132361592
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132361591
    reference: chr 3
allele count: 2
allele frequency: 1.648016612007449e-5
allele num: 121358
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.201delT
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*2129delT
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-906delT
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-12191delT
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.634delT
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.303delT
  hgvsp: ENSP00000420907.1:p.Lys103SerfsTer18
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.303delT
  hgvsp: ENSP00000347636.3:p.Lys103SerfsTer18
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.303delT
  hgvsp: ENSP00000264990.6:p.Lys103SerfsTer18
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.303delT
  hgvsp: ENSP00000419973.1:p.Lys103SerfsTer18
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 3013
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10089
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8016
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10474
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6143
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2079
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Lys103SerfsTer18
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
reference allele: GA
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

3-132361593-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132361593
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132361593
    reference: chr 3
allele count: 3
allele frequency: 2.472106399459433e-5
allele num: 121354
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-906T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.303T>C
  hgvsp: ENST00000485198.1:c.303T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.634T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.303T>C
  hgvsp: ENST00000481970.2:c.303T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*2129T>C
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.201T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.303T>C
  hgvsp: ENST00000264990.6:c.303T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-12191T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.303T>C
  hgvsp: ENST00000355458.3:c.303T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3013
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10473
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6145
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4612
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8015
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3536
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val101Val
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

3-132361595-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132361595
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132361595
    reference: chr 3
allele count: 3
allele frequency: 2.472024918011174e-5
allele num: 121358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.301G>A
  hgvsp: ENSP00000419973.1:p.Val101Ile
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.301G>A
  hgvsp: ENSP00000420907.1:p.Val101Ile
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.301G>A
  hgvsp: ENSP00000347636.3:p.Val101Ile
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.301G>A
  hgvsp: ENSP00000264990.6:p.Val101Ile
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.199G>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-12193G>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*2127G>A
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-908G>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.632G>A
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10476
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4612
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8014
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10931
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4887
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2079
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val101Ile
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP

3-132361596-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132361596
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132361596
    reference: chr 3
allele count: 6410
allele frequency: 5.282067340178321e-2
allele num: 121354
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-909C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.300C>T
  hgvsp: ENST00000355458.3:c.300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.300C>T
  hgvsp: ENST00000481970.2:c.300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*2126C>T
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-12194C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.300C>T
  hgvsp: ENST00000485198.1:c.300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.198C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.300C>T
  hgvsp: ENST00000264990.6:c.300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.631C>T
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9746
  bin: 3.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 7358
  bin: 3.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 4208
  bin: 4.75e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 5.25e1
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.75e1
  variant carriers: 259
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 6.25e1
  variant carriers: 160
genotype depth: GenotypeDepth
  all individuals: 5166
  bin: 9.75e1
  variant carriers: 3943
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 5.75e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 6.75e1
  variant carriers: 199
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 8.75e1
  variant carriers: 309
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9263
  bin: 2.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 9.25e1
  variant carriers: 353
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 7.25e1
  variant carriers: 238
genotype depth: GenotypeDepth
  all individuals: 9687
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5686
  bin: 4.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 8.25e1
  variant carriers: 291
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3244
  bin: 9.25e1
  variant carriers: 2
hgvs: p.Pro100Pro
num of homozygotes: 220
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

3-132361596-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132361596
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132361596
    reference: chr 3
allele count: 3
allele frequency: 2.472106399459433e-5
allele num: 121354
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-12194C>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.300C>G
  hgvsp: ENST00000355458.3:c.300C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.300C>G
  hgvsp: ENST00000481970.2:c.300C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.300C>G
  hgvsp: ENST00000264990.6:c.300C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.300C>G
  hgvsp: ENST00000485198.1:c.300C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.198C>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*2126C>G
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.631C>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-909C>G
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9746
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4208
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7358
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9687
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5686
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5166
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7220
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4003
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro100Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

3-132361606-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132361606
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132361606
    reference: chr 3
allele count: 17
allele frequency: 1.400883380578812e-4
allele num: 121352
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.290T>C
  hgvsp: ENSP00000419973.1:p.Ile97Thr
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*2116T>C
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.621T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.290T>C
  hgvsp: ENSP00000347636.3:p.Ile97Thr
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.188T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-919T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.290T>C
  hgvsp: ENSP00000420907.1:p.Ile97Thr
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.290T>C
  hgvsp: ENSP00000264990.6:p.Ile97Thr
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-12204T>C
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8418
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 11113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10114
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9783
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3072
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4691
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16589
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8082
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5064
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ile97Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS

3-132361606-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132361606
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132361606
    reference: chr 3
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.188T>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.290T>A
  hgvsp: ENSP00000347636.3:p.Ile97Asn
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.290T>A
  hgvsp: ENSP00000419973.1:p.Ile97Asn
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.290T>A
  hgvsp: ENSP00000264990.6:p.Ile97Asn
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.621T>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.290T>A
  hgvsp: ENSP00000420907.1:p.Ile97Asn
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-12204T>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-919T>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*2116T>A
  variant of: http://identifiers.org/hgnc/7907
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3072
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9783
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10114
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4691
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8418
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16589
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile97Asn
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/3-132361614-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132361614
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132361614
    reference: chr 3
allele count: 1
allele frequency: 8.240762105679534e-6
allele num: 121348
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.282G>T
  hgvsp: ENSP00000347636.3:p.Leu94Phe
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.613G>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.282G>T
  hgvsp: ENSP00000419973.1:p.Leu94Phe
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.180G>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.282G>T
  hgvsp: ENSP00000264990.6:p.Leu94Phe
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.282G>T
  hgvsp: ENSP00000420907.1:p.Leu94Phe
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*2108G>T
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-12212G>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-927G>T
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10107
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8422
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9788
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4693
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3609
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16596
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu94Phe
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

3-132361614-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132361614
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132361614
    reference: chr 3
allele count: 1
allele frequency: 8.240762105679534e-6
allele num: 121348
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.282G>A
  hgvsp: ENST00000264990.6:c.282G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.282G>A
  hgvsp: ENST00000355458.3:c.282G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-12212G>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.180G>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.613G>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.282G>A
  hgvsp: ENST00000481970.2:c.282G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*2108G>A
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-927G>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.282G>A
  hgvsp: ENST00000485198.1:c.282G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8422
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10107
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9788
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4693
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4468
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8084
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu94Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

3-132361618-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132361618
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132361618
    reference: chr 3
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.278C>G
  hgvsp: ENSP00000264990.6:p.Ala93Gly
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.278C>G
  hgvsp: ENSP00000420907.1:p.Ala93Gly
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.176C>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.278C>G
  hgvsp: ENSP00000347636.3:p.Ala93Gly
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*2104C>G
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-12216C>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-931C>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.609C>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.278C>G
  hgvsp: ENSP00000419973.1:p.Ala93Gly
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10105
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8422
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11112
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4693
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8082
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala93Gly
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/3-132361633-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132361633
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132361633
    reference: chr 3
allele count: 6
allele frequency: 4.945924558164073e-5
allele num: 121312
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.263T>G
  hgvsp: ENSP00000347636.3:p.Phe88Cys
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.263T>G
  hgvsp: ENSP00000419973.1:p.Phe88Cys
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.161T>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.263T>G
  hgvsp: ENSP00000420907.1:p.Phe88Cys
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.263T>G
  hgvsp: ENSP00000264990.6:p.Phe88Cys
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-12231T>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-946T>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.594T>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*2089T>G
  variant of: http://identifiers.org/hgnc/7907
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4693
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9737
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8422
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11110
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8074
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2091
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3172
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Phe88Cys
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

3-132361637-CTCTA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132361637
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132361633
    reference: chr 3
allele count: 1
allele frequency: 8.244566830458728e-6
allele num: 121292
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.255_258delTAGA
  hgvsp: ENSP00000347636.3:p.Asp85GlufsTer35
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-954_-951delTAGA
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.153_156delTAGA
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.255_258delTAGA
  hgvsp: ENSP00000264990.6:p.Asp85GlufsTer35
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.255_258delTAGA
  hgvsp: ENSP00000420907.1:p.Asp85GlufsTer35
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.586_589delTAGA
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*2081_*2084delTAGA
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-12239_461-12236delTAGA
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.255_258delTAGA
  hgvsp: ENSP00000419973.1:p.Asp85GlufsTer35
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8424
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10086
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9696
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp85GlufsTer35
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: CTCTA
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

3-132361640-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132361640
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132361640
    reference: chr 3
allele count: 1
allele frequency: 8.244702778464837e-6
allele num: 121290
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.256A>G
  hgvsp: ENSP00000420907.1:p.Arg86Gly
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.256A>G
  hgvsp: ENSP00000347636.3:p.Arg86Gly
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.256A>G
  hgvsp: ENSP00000419973.1:p.Arg86Gly
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-953A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.256A>G
  hgvsp: ENSP00000264990.6:p.Arg86Gly
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-12238A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*2082A>G
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.154A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.587A>G
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8423
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9686
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6435
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2091
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4465
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg86Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

3-132361648-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132361648
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132361648
    reference: chr 3
allele count: 1
allele frequency: 8.247286642694553e-6
allele num: 121252
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.148-2A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.581-2A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*2076-2A>G
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.250-2A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.250-2A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-12246A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-959-2A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.250-2A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.250-2A>G
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8422
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10073
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9615
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11098
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3609
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16399
  bin: 6.25e1
  variant carriers: 0
hgvs: c.250-2A>G
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum

http://identifiers.org/exac.variant/3-132361666-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132361666
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132361666
    reference: chr 3
allele count: 1
allele frequency: 8.259684480052863e-6
allele num: 121070
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.250-20T>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.250-20T>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-959-20T>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-12264T>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*2076-20T>G
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.148-20T>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.250-20T>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.581-20T>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.250-20T>G
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11063
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8417
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4694
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9986
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9331
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6437
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2089
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD

3-132361690-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132361690
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132361690
    reference: chr 3
allele count: 5
allele frequency: 4.155446959875004e-5
allele num: 120324
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.148-44T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.250-44T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-959-44T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*2076-44T>C
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.581-44T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.250-44T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.250-44T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.250-44T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-12288T>C
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8668
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8618
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4674
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2034
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6329
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9903
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8034
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2074
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

3-132361692-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132361692
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132361692
    reference: chr 3
allele count: 1
allele frequency: 8.310617645103384e-6
allele num: 120328
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.250-46A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.581-46A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-959-46A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.250-46A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*2076-46A>G
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.250-46A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.250-46A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-12290A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.148-46A>G
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9874
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3069
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6323
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8610
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8013
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17508
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1254
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/3-132361697-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132361697
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132361697
    reference: chr 3
allele count: 1
allele frequency: 8.355196096452384e-6
allele num: 119686
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.250-51T>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.250-51T>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.250-51T>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.250-51T>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*2076-51T>G
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-959-51T>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-12295T>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.148-51T>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.581-51T>G
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7672
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9343
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3067
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9678
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4671
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6248
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1146
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1144
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1359
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: A
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

3-132363593-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132363593
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132363593
    reference: chr 3
allele count: 2
allele frequency: 1.693422746054325e-5
allele num: 118104
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.249+48C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*2075+48C>T
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.580+48C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.249+48C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-960+48C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.249+48C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.147+48C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-14191C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.249+48C>T
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4728
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7639
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4053
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8653
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11769
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14401
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1684
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3211
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2686
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: G
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum

3-132363593-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132363593
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132363593
    reference: chr 3
allele count: 1
allele frequency: 8.467113730271625e-6
allele num: 118104
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.249+48C>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.249+48C>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-960+48C>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*2075+48C>A
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.249+48C>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.249+48C>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.147+48C>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-14191C>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.580+48C>A
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4728
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4053
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11769
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7639
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8653
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3358
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1684
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/3-132363607-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132363607
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132363607
    reference: chr 3
allele count: 1
allele frequency: 8.434547908232118e-6
allele num: 118560
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.249+34G>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.580+34G>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.147+34G>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*2075+34G>T
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.249+34G>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-960+34G>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-14205G>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.249+34G>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.249+34G>T
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8534
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13051
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22411
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7953
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

3-132363617-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132363617
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132363617
    reference: chr 3
allele count: 1
allele frequency: 8.376752835530836e-6
allele num: 119378
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*2075+24A>G
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.249+24A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-14215A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-960+24A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.147+24A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.249+24A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.580+24A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.249+24A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.249+24A>G
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22297
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2079
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1788
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4451
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

3-132363632-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132363632
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132363632
    reference: chr 3
allele count: 9
allele frequency: 7.472848649905344e-5
allele num: 120436
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.249+9T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*2075+9T>C
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-14230T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.580+9T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.147+9T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.249+9T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.249+9T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-960+9T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.249+9T>C
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4310
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9571
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23388
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14294
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3249
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1788
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

3-132363634-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132363634
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132363634
    reference: chr 3
allele count: 1
allele frequency: 8.29393713195654e-6
allele num: 120570
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.249+7T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*2075+7T>C
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.249+7T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.580+7T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-14232T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-960+7T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.249+7T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.147+7T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.249+7T>C
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9600
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14336
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23479
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4313
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8756
  bin: 6.75e1
  variant carriers: 0
hgvs: c.249+7T>C
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

3-132363635-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132363635
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132363635
    reference: chr 3
allele count: 1
allele frequency: 8.289674381590291e-6
allele num: 120632
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.580+6G>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-960+6G>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.249+6G>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*2075+6G>A
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.147+6G>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.249+6G>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.249+6G>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-14233G>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.249+6G>A
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14363
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9634
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23487
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8766
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1475
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
hgvs: c.249+6G>A
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

3-132363636-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132363636
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132363636
    reference: chr 3
allele count: 1
allele frequency: 8.286102548805144e-6
allele num: 120684
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.249+5A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.249+5A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.580+5A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.249+5A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.249+5A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-960+5A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-14234A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.147+5A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*2075+5A>G
  variant of: http://identifiers.org/hgnc/7907
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4321
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14373
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28637
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1791
  bin: 9.25e1
  variant carriers: 0
hgvs: c.249+5A>G
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

3-132363646-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132363646
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132363646
    reference: chr 3
allele count: 1
allele frequency: 8.267059076404159e-6
allele num: 120962
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*2070C>T
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.244C>T
  hgvsp: ENSP00000264990.6:p.His82Tyr
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-965C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.244C>T
  hgvsp: ENSP00000420907.1:p.His82Tyr
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.244C>T
  hgvsp: ENSP00000347636.3:p.His82Tyr
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.575C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-14244C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.244C>T
  hgvsp: ENSP00000419973.1:p.His82Tyr
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.142C>T
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23603
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9750
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4336
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3550
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3261
  bin: 8.25e1
  variant carriers: 0
hgvs: p.His82Tyr
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

3-132363648-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132363648
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132363648
    reference: chr 3
allele count: 1
allele frequency: 8.264599414866361e-6
allele num: 120998
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.242C>T
  hgvsp: ENSP00000420907.1:p.Ala81Val
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*2068C>T
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.242C>T
  hgvsp: ENSP00000419973.1:p.Ala81Val
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.242C>T
  hgvsp: ENSP00000347636.3:p.Ala81Val
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.242C>T
  hgvsp: ENSP00000264990.6:p.Ala81Val
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.140C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-967C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-14246C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.573C>T
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23610
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4336
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala81Val
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

3-132363654-GGAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132363654
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132363651
    reference: chr 3
allele count: 1
allele frequency: 8.259820927082301e-6
allele num: 121068
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.233_235delTTC
  hgvsp: ENSP00000264990.6:p.Leu78del
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.131_133delTTC
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-14255_461-14253delTTC
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*2059_*2061delTTC
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.233_235delTTC
  hgvsp: ENSP00000419973.1:p.Leu78del
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.233_235delTTC
  hgvsp: ENSP00000420907.1:p.Leu78del
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-976_-974delTTC
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.233_235delTTC
  hgvsp: ENSP00000347636.3:p.Leu78del
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.564_566delTTC
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14549
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9789
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23611
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7911
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4479
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu78del
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: GGAA
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

3-132363673-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132363673
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132363673
    reference: chr 3
allele count: 1
allele frequency: 8.252050634582693e-6
allele num: 121182
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.217C>A
  hgvsp: ENSP00000347636.3:p.Pro73Thr
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-14271C>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-992C>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*2043C>A
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.217C>A
  hgvsp: ENSP00000420907.1:p.Pro73Thr
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.217C>A
  hgvsp: ENSP00000419973.1:p.Pro73Thr
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.115C>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.217C>A
  hgvsp: ENSP00000264990.6:p.Pro73Thr
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.548C>A
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 23589
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4348
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9829
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1474
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7910
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8847
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro73Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

3-132363689-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132363689
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132363689
    reference: chr 3
allele count: 1
allele frequency: 8.253549026081216e-6
allele num: 121160
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-14287T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.201T>C
  hgvsp: ENST00000355458.3:c.201T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.201T>C
  hgvsp: ENST00000485198.1:c.201T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-1008T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.201T>C
  hgvsp: ENST00000481970.2:c.201T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.201T>C
  hgvsp: ENST00000264990.6:c.201T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*2027T>C
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.532T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.99T>C
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9814
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4350
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3553
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Tyr67Tyr
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP

3-132363702-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132363702
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132363702
    reference: chr 3
allele count: 1
allele frequency: 8.25559316436886e-6
allele num: 121130
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.188G>A
  hgvsp: ENSP00000347636.3:p.Gly63Asp
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.188G>A
  hgvsp: ENSP00000419973.1:p.Gly63Asp
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.86G>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*2014G>A
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.519G>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.188G>A
  hgvsp: ENSP00000264990.6:p.Gly63Asp
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.188G>A
  hgvsp: ENSP00000420907.1:p.Gly63Asp
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-1021G>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-14300G>A
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 9809
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14612
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8840
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1474
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly63Asp
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ

3-132363707-CTGGAGATAAAAGGTTGGAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132363707
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132363688
    reference: chr 3
allele count: 5
allele frequency: 4.128341892762191e-5
allele num: 121114
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsp: ENSP00000420907.1:p.Asn55ArgfsTer60
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsp: ENSP00000347636.3:p.Asn55ArgfsTer60
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsp: ENSP00000419973.1:p.Asn55ArgfsTer60
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsp: ENSP00000264990.6:p.Asn55ArgfsTer60
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 23391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14598
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9807
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3550
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4471
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asn55ArgfsTer60
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: CTGGAGATAAAAGGTTGGAT
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP

3-132363709-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132363709
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132363709
    reference: chr 3
allele count: 7
allele frequency: 5.780824180361715e-5
allele num: 121090
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.512C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.181C>T
  hgvsp: ENSP00000420907.1:p.Gln61Ter
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.181C>T
  hgvsp: ENSP00000264990.6:p.Gln61Ter
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.181C>T
  hgvsp: ENSP00000347636.3:p.Gln61Ter
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.79C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-14307C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*2007C>T
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.181C>T
  hgvsp: ENSP00000419973.1:p.Gln61Ter
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-1028C>T
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23341
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4469
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28918
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gln61Ter
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

3-132363714-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132363714
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132363714
    reference: chr 3
allele count: 1
allele frequency: 8.258729477057249e-6
allele num: 121084
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.176A>G
  hgvsp: ENSP00000419973.1:p.Tyr59Cys
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.176A>G
  hgvsp: ENSP00000347636.3:p.Tyr59Cys
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-14312A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.176A>G
  hgvsp: ENSP00000264990.6:p.Tyr59Cys
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.507A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.176A>G
  hgvsp: ENSP00000420907.1:p.Tyr59Cys
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.74A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-1033A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*2002A>G
  variant of: http://identifiers.org/hgnc/7907
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14581
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23310
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8819
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Tyr59Cys
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

3-132363719-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132363719
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132363719
    reference: chr 3
allele count: 1
allele frequency: 8.259684480052863e-6
allele num: 121070
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-14317C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.171C>T
  hgvsp: ENST00000485198.1:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.171C>T
  hgvsp: ENST00000355458.3:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.171C>T
  hgvsp: ENST00000264990.6:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*1997C>T
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-1038C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.69C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.502C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.171C>T
  hgvsp: ENST00000481970.2:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14573
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4356
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr57Thr
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ

3-132363726-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132363726
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132363726
    reference: chr 3
allele count: 14
allele frequency: 1.156757114056251e-4
allele num: 121028
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.164A>G
  hgvsp: ENSP00000264990.6:p.Asn55Ser
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-1045A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.495A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.62A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-14324A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.164A>G
  hgvsp: ENSP00000419973.1:p.Asn55Ser
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.164A>G
  hgvsp: ENSP00000420907.1:p.Asn55Ser
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*1990A>G
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.164A>G
  hgvsp: ENSP00000347636.3:p.Asn55Ser
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9797
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14551
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4355
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23088
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3245
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn55Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/3-132363731-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132363731
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132363731
    reference: chr 3
allele count: 1
allele frequency: 8.268836409340477e-6
allele num: 120936
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.159G>T
  hgvsp: ENSP00000420907.1:p.Lys53Asn
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-1050G>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-14329G>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.159G>T
  hgvsp: ENSP00000419973.1:p.Lys53Asn
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.159G>T
  hgvsp: ENSP00000347636.3:p.Lys53Asn
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.159G>T
  hgvsp: ENSP00000264990.6:p.Lys53Asn
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.490G>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*1985G>T
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.57G>T
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14442
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28266
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8744
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys53Asn
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

3-132363734-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132363734
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132363734
    reference: chr 3
allele count: 2
allele frequency: 1.654177625593436e-5
allele num: 120906
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.156A>G
  hgvsp: ENST00000355458.3:c.156A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.54A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.156A>G
  hgvsp: ENST00000481970.2:c.156A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*1982A>G
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.487A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-1053A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.156A>G
  hgvsp: ENST00000485198.1:c.156A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.156A>G
  hgvsp: ENST00000264990.6:c.156A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-14332A>G
  variant of: http://identifiers.org/hgnc/30211
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4361
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22737
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9793
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 3.25e1
  variant carriers: 0
hgvs: c.*1982A>G
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

3-132363740-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132363740
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132363740
    reference: chr 3
allele count: 2
allele frequency: 1.658154805332626e-5
allele num: 120616
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.150A>C
  hgvsp: ENSP00000419973.1:p.Arg50Ser
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*1981-5A>C
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-1059A>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.150A>C
  hgvsp: ENSP00000420907.1:p.Arg50Ser
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.150A>C
  hgvsp: ENSP00000264990.6:p.Arg50Ser
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.48A>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-14338A>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.481A>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.150A>C
  hgvsp: ENSP00000347636.3:p.Arg50Ser
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14442
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg50Ser
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

3-132363742-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132363742
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132363742
    reference: chr 3
allele count: 2
allele frequency: 1.662648599218555e-5
allele num: 120290
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.48-2A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.150-2A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*1981-7A>G
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.150-2A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-14340A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.481-2A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.150-2A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-1059-2A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.150-2A>G
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10470
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19856
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1469
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1788
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1474
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
hgvs: c.150-2A>G
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

3-132363744-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132363744
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132363744
    reference: chr 3
allele count: 1
allele frequency: 8.314487162431821e-6
allele num: 120272
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-14342C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-1059-4C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.150-4C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.150-4C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.150-4C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.48-4C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.481-4C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.150-4C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*1981-9C>T
  variant of: http://identifiers.org/hgnc/7907
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19597
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4792
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7912
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3230
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 2.75e1
  variant carriers: 0
hgvs: c.150-4C>T
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD

3-132363752-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132363752
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132363753
    reference: chr 3
allele count: 478
allele frequency: 5.1652222774524e-3
allele num: 92542
alternate allele: TA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.150-13dupT
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.481-13dupT
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.150-13dupT
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-14351dupT
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*1981-18dupT
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.150-13dupT
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.150-13dupT
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-1059-13dupT
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.48-13dupT
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: intron
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 1.75e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6742
  bin: 4.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 1.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 4225
  bin: 4.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10045
  bin: 2.75e1
  variant carriers: 237
genotype depth: GenotypeDepth
  all individuals: 11000
  bin: 3.25e1
  variant carriers: 165
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9365
  bin: 3.75e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6435
  bin: 2.25e1
  variant carriers: 210
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2158
  bin: 1.25e1
  variant carriers: 88
genotype quality: GenotypeQuality
  all individuals: 2291
  bin: 4.25e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 2425
  bin: 7.5e0
  variant carriers: 106
genotype quality: GenotypeQuality
  all individuals: 2224
  bin: 1.75e1
  variant carriers: 111
genotype quality: GenotypeQuality
  all individuals: 2067
  bin: 4.75e1
  variant carriers: 48
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

3-132363752-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132363752
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132363751
    reference: chr 3
allele count: 39559
allele frequency: 4.274707700287437e-1
allele num: 92542
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-1059-13delT
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*1981-18delT
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.150-13delT
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-14351delT
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.150-13delT
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.48-13delT
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.150-13delT
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.481-13delT
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.150-13delT
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: intron
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 1.75e1
  variant carriers: 1772
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 172
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.75e1
  variant carriers: 279
genotype depth: GenotypeDepth
  all individuals: 4225
  bin: 4.75e1
  variant carriers: 2960
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 119
genotype depth: GenotypeDepth
  all individuals: 10045
  bin: 2.75e1
  variant carriers: 7510
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 5.25e1
  variant carriers: 1613
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6435
  bin: 2.25e1
  variant carriers: 4687
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 6.75e1
  variant carriers: 382
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 1.25e1
  variant carriers: 462
genotype depth: GenotypeDepth
  all individuals: 6742
  bin: 4.25e1
  variant carriers: 4949
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 7.5e0
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 11000
  bin: 3.25e1
  variant carriers: 8342
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.25e1
  variant carriers: 185
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 6.25e1
  variant carriers: 543
genotype depth: GenotypeDepth
  all individuals: 9365
  bin: 3.75e1
  variant carriers: 7068
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 9.75e1
  variant carriers: 1181
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 5.75e1
  variant carriers: 871
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.25e1
  variant carriers: 326
genotype quality: GenotypeQuality
  all individuals: 16236
  bin: 9.75e1
  variant carriers: 16008
genotype quality: GenotypeQuality
  all individuals: 2224
  bin: 1.75e1
  variant carriers: 1277
genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 8.75e1
  variant carriers: 1415
genotype quality: GenotypeQuality
  all individuals: 2425
  bin: 7.5e0
  variant carriers: 885
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 8.25e1
  variant carriers: 1467
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: TA
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

3-132363752-TAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132363752
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132363750
    reference: chr 3
allele count: 286
allele frequency: 3.090488642994532e-3
allele num: 92542
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-1059-14_-1059-13delTT
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-14352_461-14351delTT
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*1981-19_*1981-18delTT
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.150-14_150-13delTT
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.48-14_48-13delTT
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.481-14_481-13delTT
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.150-14_150-13delTT
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.150-14_150-13delTT
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.150-14_150-13delTT
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: intron
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4225
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 1.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9365
  bin: 3.75e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 6435
  bin: 2.25e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 10045
  bin: 2.75e1
  variant carriers: 126
genotype depth: GenotypeDepth
  all individuals: 6742
  bin: 4.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11000
  bin: 3.25e1
  variant carriers: 112
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16236
  bin: 9.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 7402
  bin: 2.5e0
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 2772
  bin: 2.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 1952
  bin: 5.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 2291
  bin: 4.25e1
  variant carriers: 24
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: TAA
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

3-132363760-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132363760
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132363760
    reference: chr 3
allele count: 9
allele frequency: 7.604562737642586e-5
allele num: 118350
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.481-20T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.150-20T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.150-20T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.150-20T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.48-20T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-14358T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*1981-25T>C
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-1059-20T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.150-20T>C
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13370
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6472
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23961
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3503
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3910
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3115
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1260
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-132363763-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132363763
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132363763
    reference: chr 3
allele count: 1
allele frequency: 8.478312476684641e-6
allele num: 117948
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*1981-28T>C
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.150-23T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-14361T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-1059-23T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.48-23T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.150-23T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.150-23T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.150-23T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.481-23T>C
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12996
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4424
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22801
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3509
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1814
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2543
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-132363764-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132363764
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132363764
    reference: chr 3
allele count: 1
allele frequency: 8.547885253188362e-6
allele num: 116988
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-14362T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.150-24T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.48-24T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*1981-29T>C
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-1059-24T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.481-24T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.150-24T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.150-24T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.150-24T>C
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22841
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4482
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2493
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12916
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2360
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1268
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6730
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/3-132363770-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132363770
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132363770
    reference: chr 3
allele count: 1
allele frequency: 8.525585281429571e-6
allele num: 117294
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.150-30T>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*1981-35T>G
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.150-30T>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-1059-30T>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.150-30T>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-14368T>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.150-30T>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.48-30T>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.481-30T>G
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3104
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20949
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10792
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6650
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26173
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2223
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

3-132363771-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132363771
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132363771
    reference: chr 3
allele count: 6
allele frequency: 5.117794571725891e-5
allele num: 117238
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.481-31A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.150-31A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.150-31A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-14369A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*1981-36A>G
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.150-31A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.150-31A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-1059-31A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.48-31A>G
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6333
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10719
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3093
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6726
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20934
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26542
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2213
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

3-132363779-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132363779
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132363779
    reference: chr 3
allele count: 1
allele frequency: 8.59490494035136e-6
allele num: 116348
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.150-39T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.150-39T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.150-39T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.48-39T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-14377T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.481-39T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-1059-39T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.150-39T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*1981-44T>C
  variant of: http://identifiers.org/hgnc/7907
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8460
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7639
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10857
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15483
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5033
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum

3-132363780-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132363780
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132363780
    reference: chr 3
allele count: 3
allele frequency: 2.582511233923867e-5
allele num: 116166
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.48-40A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.150-40A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*1981-45A>G
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.150-40A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-1059-40A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.150-40A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.150-40A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.481-40A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-14378A>G
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7931
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8037
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7199
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14428
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12044
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3647
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4323
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2029
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD

3-132363786-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132363786
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132363786
    reference: chr 3
allele count: 15743
allele frequency: 1.370362632962518e-1
allele num: 114882
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.481-46A>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-14384A>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.150-46A>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*1981-51A>T
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-1059-46A>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.150-46A>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.150-46A>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.150-46A>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.48-46A>T
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 7.5e0
  variant carriers: 338
genotype depth: GenotypeDepth
  all individuals: 13158
  bin: 1.75e1
  variant carriers: 2270
genotype depth: GenotypeDepth
  all individuals: 7054
  bin: 1.25e1
  variant carriers: 1013
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 2.5e0
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 5.75e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 5.25e1
  variant carriers: 155
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.75e1
  variant carriers: 234
genotype depth: GenotypeDepth
  all individuals: 12158
  bin: 2.25e1
  variant carriers: 3229
genotype depth: GenotypeDepth
  all individuals: 11055
  bin: 2.75e1
  variant carriers: 2971
genotype depth: GenotypeDepth
  all individuals: 6169
  bin: 3.25e1
  variant carriers: 1883
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 9.75e1
  variant carriers: 300
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 4.25e1
  variant carriers: 514
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.75e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.25e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 3.75e1
  variant carriers: 968
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 4112
  bin: 3.25e1
  variant carriers: 70
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 8.25e1
  variant carriers: 183
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 1.25e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 8.75e1
  variant carriers: 130
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 7.5e0
  variant carriers: 21
num of homozygotes: 1808
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP

3-132363790-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132363790
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132363790
    reference: chr 3
allele count: 6
allele frequency: 5.295768680824022e-5
allele num: 113298
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.150-50C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*1981-55C>T
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.150-50C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.48-50C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.481-50C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.150-50C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-1059-50C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.461-14388C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.150-50C>T
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9542
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14068
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7725
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13964
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4785
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1812
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2623
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5428
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3673
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/3-132378400-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132378400
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132378400
    reference: chr 3
allele count: 4
allele frequency: 3.306714283352347e-5
allele num: 120966
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.149+47G>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.149+47G>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000081307
  ensembl protein: ENSP00000348565
  ensembl transcript: ENST00000356232
  gene symbol: UBA5
  hgvsc: ENST00000356232.4:c.-982C>A
  variant of: http://identifiers.org/hgnc/23230
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*1981-14665G>T
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081307
  ensembl protein: ENSP00000264991
  ensembl transcript: ENST00000264991
  gene symbol: UBA5
  hgvsc: ENST00000264991.4:c.-8+4886C>A
  variant of: http://identifiers.org/hgnc/23230
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.480+47G>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.149+47G>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.47+47G>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-1060+47G>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.149+47G>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.460+47G>T
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8411
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2989
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5175
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8430
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15365
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-132378401-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132378401
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132378401
    reference: chr 3
allele count: 156
allele frequency: 1.289341444062417e-3
allele num: 120992
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.47+46T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.149+46T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-1060+46T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.460+46T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000081307
  ensembl protein: ENSP00000348565
  ensembl transcript: ENST00000356232
  gene symbol: UBA5
  hgvsc: ENST00000356232.4:c.-981A>G
  variant of: http://identifiers.org/hgnc/23230
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.480+46T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.149+46T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*1981-14666T>C
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081307
  ensembl protein: ENSP00000264991
  ensembl transcript: ENST00000264991
  gene symbol: UBA5
  hgvsc: ENST00000264991.4:c.-8+4887A>G
  variant of: http://identifiers.org/hgnc/23230
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.149+46T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.149+46T>C
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8559
  bin: 2.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8416
  bin: 3.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2984
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5179
  bin: 4.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 12849
  bin: 3.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15215
  bin: 2.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 2
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

3-132378405-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132378405
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132378405
    reference: chr 3
allele count: 1
allele frequency: 8.264189613566494e-6
allele num: 121004
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000081307
  ensembl protein: ENSP00000348565
  ensembl transcript: ENST00000356232
  gene symbol: UBA5
  hgvsc: ENST00000356232.4:c.-977T>A
  variant of: http://identifiers.org/hgnc/23230
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.149+42A>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.149+42A>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.460+42A>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.480+42A>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.47+42A>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-1060+42A>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*1981-14670A>T
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.149+42A>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.149+42A>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081307
  ensembl protein: ENSP00000264991
  ensembl transcript: ENST00000264991
  gene symbol: UBA5
  hgvsc: ENST00000264991.4:c.-8+4891T>A
  variant of: http://identifiers.org/hgnc/23230
canonical: true
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8868
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8427
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2988
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP

3-132378406-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132378406
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132378406
    reference: chr 3
allele count: 1
allele frequency: 8.263779852904718e-6
allele num: 121010
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.460+41T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.480+41T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.149+41T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.47+41T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000081307
  ensembl protein: ENSP00000348565
  ensembl transcript: ENST00000356232
  gene symbol: UBA5
  hgvsc: ENST00000356232.4:c.-976A>G
  variant of: http://identifiers.org/hgnc/23230
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-1060+41T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.149+41T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*1981-14671T>C
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.149+41T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081307
  ensembl protein: ENSP00000264991
  ensembl transcript: ENST00000264991
  gene symbol: UBA5
  hgvsc: ENST00000264991.4:c.-8+4892A>G
  variant of: http://identifiers.org/hgnc/23230
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.149+41T>C
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12937
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8999
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2989
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5173
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

3-132378408-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132378408
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132378408
    reference: chr 3
allele count: 268
allele frequency: 2.214290435587283e-3
allele num: 121032
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.480+39T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000081307
  ensembl protein: ENSP00000348565
  ensembl transcript: ENST00000356232
  gene symbol: UBA5
  hgvsc: ENST00000356232.4:c.-974A>G
  variant of: http://identifiers.org/hgnc/23230
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.47+39T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081307
  ensembl protein: ENSP00000264991
  ensembl transcript: ENST00000264991
  gene symbol: UBA5
  hgvsc: ENST00000264991.4:c.-8+4894A>G
  variant of: http://identifiers.org/hgnc/23230
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*1981-14673T>C
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.149+39T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.149+39T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.149+39T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.460+39T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.149+39T>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-1060+39T>C
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12980
  bin: 3.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 5.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 8427
  bin: 3.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2989
  bin: 4.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 5178
  bin: 4.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9134
  bin: 2.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 15425
  bin: 2.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3740
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 4
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

3-132378410-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132378410
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132378410
    reference: chr 3
allele count: 18
allele frequency: 1.490954873765821e-4
allele num: 120728
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.480+37T>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-1060+37T>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.149+37T>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.149+37T>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081307
  ensembl protein: ENSP00000264991
  ensembl transcript: ENST00000264991
  gene symbol: UBA5
  hgvsc: ENST00000264991.4:c.-8+4896A>T
  variant of: http://identifiers.org/hgnc/23230
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.460+37T>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*1981-14675T>A
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000081307
  ensembl protein: ENSP00000348565
  ensembl transcript: ENST00000356232
  gene symbol: UBA5
  hgvsc: ENST00000356232.4:c.-972A>T
  variant of: http://identifiers.org/hgnc/23230
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.149+37T>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.47+37T>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.149+37T>A
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8476
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13196
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5224
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15497
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3005
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8947
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

3-132378420-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132378420
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132378420
    reference: chr 3
allele count: 1
allele frequency: 8.260366760284156e-6
allele num: 121060
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.480+27C>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-1060+27C>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081307
  ensembl protein: ENSP00000264991
  ensembl transcript: ENST00000264991
  gene symbol: UBA5
  hgvsc: ENST00000264991.4:c.-8+4906G>T
  variant of: http://identifiers.org/hgnc/23230
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*1981-14685C>A
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.149+27C>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.47+27C>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.149+27C>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.460+27C>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.149+27C>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.149+27C>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000081307
  ensembl protein: ENSP00000348565
  ensembl transcript: ENST00000356232
  gene symbol: UBA5
  hgvsc: ENST00000356232.4:c.-962G>T
  variant of: http://identifiers.org/hgnc/23230
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15820
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8510
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5248
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13382
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

3-132378422-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132378422
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132378422
    reference: chr 3
allele count: 1
allele frequency: 8.25722920416825e-6
allele num: 121106
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.149+25A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.480+25A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.149+25A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000081307
  ensembl protein: ENSP00000348565
  ensembl transcript: ENST00000356232
  gene symbol: UBA5
  hgvsc: ENST00000356232.4:c.-960T>C
  variant of: http://identifiers.org/hgnc/23230
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.47+25A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-1060+25A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.149+25A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.149+25A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.460+25A>G
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081307
  ensembl protein: ENSP00000264991
  ensembl transcript: ENST00000264991
  gene symbol: UBA5
  hgvsc: ENST00000264991.4:c.-8+4908T>C
  variant of: http://identifiers.org/hgnc/23230
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*1981-14687A>G
  variant of: http://identifiers.org/hgnc/7907
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9599
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15900
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3001
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8515
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13424
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5252
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3353
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

3-132378422-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132378422
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132378422
    reference: chr 3
allele count: 1
allele frequency: 8.25722920416825e-6
allele num: 121106
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081307
  ensembl protein: ENSP00000264991
  ensembl transcript: ENST00000264991
  gene symbol: UBA5
  hgvsc: ENST00000264991.4:c.-8+4908T>G
  variant of: http://identifiers.org/hgnc/23230
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000081307
  ensembl protein: ENSP00000348565
  ensembl transcript: ENST00000356232
  gene symbol: UBA5
  hgvsc: ENST00000356232.4:c.-960T>G
  variant of: http://identifiers.org/hgnc/23230
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.480+25A>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.149+25A>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.149+25A>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-1060+25A>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.47+25A>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*1981-14687A>C
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.149+25A>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.149+25A>C
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.460+25A>C
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9599
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15900
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8515
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3001
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13424
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7541
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum

3-132378426-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132378426
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132378426
    reference: chr 3
allele count: 1
allele frequency: 8.254366559910193e-6
allele num: 121148
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.149+21C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-1060+21C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.460+21C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.149+21C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000081307
  ensembl protein: ENSP00000348565
  ensembl transcript: ENST00000356232
  gene symbol: UBA5
  hgvsc: ENST00000356232.4:c.-956G>A
  variant of: http://identifiers.org/hgnc/23230
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.47+21C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.149+21C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081307
  ensembl protein: ENSP00000264991
  ensembl transcript: ENST00000264991
  gene symbol: UBA5
  hgvsc: ENST00000264991.4:c.-8+4912G>A
  variant of: http://identifiers.org/hgnc/23230
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.480+21C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*1981-14691C>T
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.149+21C>T
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3001
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9622
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13509
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15990
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8527
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
reference allele: G
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-132378432-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132378432
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132378432
    reference: chr 3
allele count: 2
allele frequency: 1.650328415354656e-5
allele num: 121188
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*1981-14697C>A
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.149+15C>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.149+15C>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.149+15C>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-1060+15C>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.149+15C>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000081307
  ensembl protein: ENSP00000348565
  ensembl transcript: ENST00000356232
  gene symbol: UBA5
  hgvsc: ENST00000356232.4:c.-950G>T
  variant of: http://identifiers.org/hgnc/23230
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.47+15C>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081307
  ensembl protein: ENSP00000264991
  ensembl transcript: ENST00000264991
  gene symbol: UBA5
  hgvsc: ENST00000264991.4:c.-8+4918G>T
  variant of: http://identifiers.org/hgnc/23230
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.480+15C>A
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.460+15C>A
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13617
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16095
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5254
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9619
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3002
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

3-132378433-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132378433
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132378433
    reference: chr 3
allele count: 1
allele frequency: 8.252050634582693e-6
allele num: 121182
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.460+14C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000081307
  ensembl protein: ENSP00000348565
  ensembl transcript: ENST00000356232
  gene symbol: UBA5
  hgvsc: ENST00000356232.4:c.-949G>A
  variant of: http://identifiers.org/hgnc/23230
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.149+14C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.47+14C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081307
  ensembl protein: ENSP00000264991
  ensembl transcript: ENST00000264991
  gene symbol: UBA5
  hgvsc: ENST00000264991.4:c.-8+4919G>A
  variant of: http://identifiers.org/hgnc/23230
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.149+14C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*1981-14698C>T
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-1060+14C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.480+14C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.149+14C>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.149+14C>T
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5254
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16107
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13644
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4553
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
reference allele: G
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/3-132378434-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132378434
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132378434
    reference: chr 3
allele count: 1
allele frequency: 8.251097395953662e-6
allele num: 121196
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000081307
  ensembl protein: ENSP00000348565
  ensembl transcript: ENST00000356232
  gene symbol: UBA5
  hgvsc: ENST00000356232.4:c.-948C>A
  variant of: http://identifiers.org/hgnc/23230
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.149+13G>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.149+13G>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.480+13G>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-1060+13G>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081307
  ensembl protein: ENSP00000264991
  ensembl transcript: ENST00000264991
  gene symbol: UBA5
  hgvsc: ENST00000264991.4:c.-8+4920C>A
  variant of: http://identifiers.org/hgnc/23230
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.47+13G>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.149+13G>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.149+13G>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.460+13G>T
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  hgvsc: ENST00000471702.1:c.*1981-14699G>T
  variant of: http://identifiers.org/hgnc/7907
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16140
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9577
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3004
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13654
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14193
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

3-132378438-CATCCAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132378438
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 132378432
    reference: chr 3
allele count: 1
allele frequency: 8.249599894405122e-6
allele num: 121218
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000081307
  ensembl protein: ENSP00000264991
  ensembl transcript: ENST00000264991
  gene symbol: UBA5
  variant of: http://identifiers.org/hgnc/23230
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000420907
  ensembl transcript: ENST00000481970
  gene symbol: ACAD11
  hgvsc: ENST00000481970.2:c.149+3_149+8delATGGAT
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000264990
  ensembl transcript: ENST00000264990
  gene symbol: ACAD11
  hgvsc: ENST00000264990.6:c.149+3_149+8delATGGAT
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000489991
  gene symbol: ACAD11
  hgvsc: ENST00000489991.1:n.460+3_460+8delATGGAT
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113971
  ensembl protein: ENSP00000419763
  ensembl transcript: ENST00000471702
  gene symbol: NPHP3
  variant of: http://identifiers.org/hgnc/7907
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000081307
  ensembl protein: ENSP00000348565
  ensembl transcript: ENST00000356232
  gene symbol: UBA5
  hgvsc: ENST00000356232.4:c.-942_-937delTCCATA
  variant of: http://identifiers.org/hgnc/23230
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000419973
  ensembl transcript: ENST00000485198
  gene symbol: ACAD11
  hgvsc: ENST00000485198.1:c.149+3_149+8delATGGAT
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000347636
  ensembl transcript: ENST00000355458
  gene symbol: ACAD11
  hgvsc: ENST00000355458.3:c.149+3_149+8delATGGAT
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000496418
  gene symbol: ACAD11
  hgvsc: ENST00000496418.1:n.47+3_47+8delATGGAT
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl protein: ENSP00000446263
  ensembl transcript: ENST00000545291
  gene symbol: ACAD11
  hgvsc: ENST00000545291.1:c.-1060+3_-1060+8delATGGAT
  variant of: http://identifiers.org/hgnc/30211
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000240303
  ensembl transcript: ENST00000469042
  gene symbol: ACAD11
  hgvsc: ENST00000469042.1:n.480+3_480+8delATGGAT
  variant of: http://identifiers.org/hgnc/30211
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8551
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16202
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3004
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5256
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9546
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.149+3_149+8delATGGAT
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: CATCCAT
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

3-132378439-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 132378439
    reference: chr 3
allele count: 8
allele frequency: 6.599571027883188e-5
allele num: 121220
alternate allele: T
canonical: true
consequence: splice region
filter: PASS
hgvs: c.149+8T>A
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16119
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3530
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3066
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4866
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7586
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4336
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.25e1
variant carriers: 3

GenotypeQuality
all individuals: 2068
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.093845216331506e-4
allele num: 6564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.050735514860402e-4
allele num: 66620
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.897430944562488e-4
allele num: 10354
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.382827e6

FS
type: SiteQuality
SIO_000300: 1.57807e2

VQSLOD
type: SiteQuality
SIO_000300: -1.202e2

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.912e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.959e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.809e0

QD
type: SiteQuality
SIO_000300: 2.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.32e0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18846
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4348
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16223
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7625
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

DP
type: SiteQuality
SIO_000300: 2.374105e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.0778e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.407e0

MQ
type: SiteQuality
SIO_000300: 6.093e1

VQSLOD
type: SiteQuality
SIO_000300: 7.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.89e-1

QD
type: SiteQuality
SIO_000300: 1.63e1

GenotypeQuality
all individuals: 4886
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7626
bin: 6.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.926411096127914e-4
allele num: 10382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.84e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.1e-1

FS
type: SiteQuality
SIO_000300: 1.44924e2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.649e0

MQ
type: SiteQuality
SIO_000300: 5.926e1

DP
type: SiteQuality
SIO_000300: 2.373812e6

VQSLOD
type: SiteQuality
SIO_000300: -9.688e1

QD
type: SiteQuality
SIO_000300: 4.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 16227
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GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.496807266840543e-5
allele num: 66714
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.176e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.223e0

VQSLOD
type: SiteQuality
SIO_000300: -1.248e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.33e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
SIO_000300: 2.347e1

DP
type: SiteQuality
SIO_000300: 2.374139e6

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7220
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variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 6186

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 15184
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4511
bin: 7.75e1
variant carriers: 1

Latino
type: Population
allele count: 304
allele frequency: 2.626123013130615e-2
allele num: 11576
num of homozygotes: 8

South Asian
type: Population
allele count: 933
allele frequency: 5.651120533010297e-2
allele num: 16510
num of homozygotes: 42

African
type: Population
allele count: 201
allele frequency: 1.936043151608553e-2
allele num: 10382
num of homozygotes: 3

East Asian
type: Population
allele count: 66
allele frequency: 7.626531083891842e-3
allele num: 8654
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 457
allele frequency: 6.909585727245238e-2
allele num: 6614
num of homozygotes: 20

Other
type: Population
allele count: 34
allele frequency: 3.744493392070485e-2
allele num: 908
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 4415
allele frequency: 6.618198171188727e-2
allele num: 66710
num of homozygotes: 145

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

MQRankSum
type: SiteQuality
SIO_000300: 1.42e-1

DP
type: SiteQuality
SIO_000300: 2.811415e6

VQSLOD
type: SiteQuality
SIO_000300: 7.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.35e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.42e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.48e-1

QD
type: SiteQuality
SIO_000300: 1.381e1

GenotypeQuality
all individuals: 15184
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
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GenotypeQuality
all individuals: 21711
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variant carriers: 3

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3244
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.42e-2

QD
type: SiteQuality
SIO_000300: 1.381e1

VQSLOD
type: SiteQuality
SIO_000300: 7.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.35e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.811415e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

GenotypeQuality
all individuals: 2091
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4465
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3609
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 37
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variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 3178
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GenotypeQuality
all individuals: 17527
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variant carriers: 17

GenotypeQuality
all individuals: 9
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.637625289128758e-5
allele num: 10376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.09851005785892e-4
allele num: 66714
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.0e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

DP
type: SiteQuality
SIO_000300: 2.373217e6

MQRankSum
type: SiteQuality
SIO_000300: 3.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.93e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.98e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.42e0

QD
type: SiteQuality
SIO_000300: 1.396e1

FS
type: SiteQuality
SIO_000300: 1.133e0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2091
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variant carriers: 0

GenotypeQuality
all individuals: 3178
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3609
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.98e0

FS
type: SiteQuality
SIO_000300: 1.133e0

MQRankSum
type: SiteQuality
SIO_000300: 3.43e-1

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.93e-1

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.42e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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FS
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MQRankSum
type: SiteQuality
SIO_000300: 5.19e-1

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
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DP
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.62e-1

QD
type: SiteQuality
SIO_000300: 1.107e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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European (Finnish)
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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Latino
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South Asian
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Other
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MQ
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DP
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InbreedingCoeff
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QD
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MQRankSum
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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FS
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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South Asian
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African
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East Asian
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Other
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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DP
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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FS
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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allele num: 66696
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Other
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East Asian
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African
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South Asian
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VQSLOD
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MQ
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DP
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MQRankSum
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ReadPosRankSum
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FS
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QD
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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num of homozygotes: 0

East Asian
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num of homozygotes: 0

Latino
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num of homozygotes: 0

European (Non-Finnish)
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South Asian
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
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BaseQRankSum
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VQSLOD
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MQRankSum
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FS
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DP
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MQ
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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num of homozygotes: 0

European (Finnish)
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South Asian
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Other
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East Asian
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African
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Latino
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FS
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BaseQRankSum
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MQ
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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DP
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VQSLOD
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

East Asian
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Other
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African
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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Latino
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ClippingRankSum
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ReadPosRankSum
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FS
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MQ
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QD
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DP
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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European (Finnish)
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African
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Latino
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East Asian
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European (Non-Finnish)
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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VQSLOD
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FS
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ClippingRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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South Asian
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Latino
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European (Finnish)
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East Asian
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Other
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FS
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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MQ
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QD
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ClippingRankSum
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DP
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MQRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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Latino
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South Asian
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African
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European (Finnish)
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.36e-1

QD
type: SiteQuality
SIO_000300: 1.566e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.422e0

VQSLOD
type: SiteQuality
SIO_000300: 2.94e-1

DP
type: SiteQuality
SIO_000300: 2.313139e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 5.85e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4549
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4331
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.066488716330988e-5
allele num: 16484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65840
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.911e0

QD
type: SiteQuality
SIO_000300: 1.919e1

DP
type: SiteQuality
SIO_000300: 2.304959e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.793e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.41e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.468e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.88e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
all individuals: 3082
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16156
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.085181871471323e-5
allele num: 64826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8296
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9990
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.433e1

VQSLOD
type: SiteQuality
SIO_000300: 1.5e-1

DP
type: SiteQuality
SIO_000300: 1.861904e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.644e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQRankSum
type: SiteQuality
SIO_000300: -1.184e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7889
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 6.189650903689032e-5
allele num: 16156
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64826
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9990
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.644e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.1e-3

DP
type: SiteQuality
SIO_000300: 1.861904e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.184e0

QD
type: SiteQuality
SIO_000300: 1.433e1

VQSLOD
type: SiteQuality
SIO_000300: 1.5e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 783
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variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 7.5e0
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65150
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16206
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8334
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.988014382740711e-5
allele num: 10012
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.196e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.6e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.926233e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.92e-1

QD
type: SiteQuality
SIO_000300: 9.369999999999999e0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1468
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65664
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10060
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.520218911523259e-4
allele num: 6578
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.04e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.41e0

DP
type: SiteQuality
SIO_000300: 1.965727e6

MQ
type: SiteQuality
SIO_000300: 5.95e1

VQSLOD
type: SiteQuality
SIO_000300: -8.272e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.249e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.25e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.945797329143755e-4
allele num: 10184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16418
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.695652173913044e-5
allele num: 11500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.54557527465894e-5
allele num: 66264
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.962e1

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-1

QD
type: SiteQuality
SIO_000300: 1.42e1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.997302e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.83e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.72e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.798157946306095e-5
allele num: 10206
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.057e0

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.999522e6

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
all individuals: 49
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506795648374167e-5
allele num: 66366
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.65e0

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 1.37e-1

QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10226
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506024096385542e-5
allele num: 66400
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-1

DP
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SIO_000300: 2.001808e6

FS
type: SiteQuality
SIO_000300: 2.96e0

InbreedingCoeff
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SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: -7.91e-1

MQ
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SIO_000300: 5.948e1

ReadPosRankSum
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SIO_000300: 1.33e0

QD
type: SiteQuality
SIO_000300: 9.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.56e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.069434328720563e-5
allele num: 16476
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66550
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
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DP
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FS
type: SiteQuality
SIO_000300: 4.572e0

InbreedingCoeff
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SIO_000300: -1.0e-4

QD
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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SIO_000300: -5.49e-1

BaseQRankSum
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SIO_000300: -4.493e0

MQ
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SIO_000300: 5.904e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8626
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Other
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.067961165048543e-5
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66572
num of homozygotes: 0

African
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.835e0

ReadPosRankSum
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

DP
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MQ
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
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SIO_000300: -2.567e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501366243281386e-5
allele num: 66606
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.362e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.09e-1

QD
type: SiteQuality
SIO_000300: 1.862e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e0

MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.009865e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500375093773443e-5
allele num: 66650
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.931e1

DP
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
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MQRankSum
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ClippingRankSum
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SIO_000300: -7.62e-1

BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 2.356e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.44e0

VQSLOD
type: SiteQuality
SIO_000300: -5.957e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 9.678668215253581e-5
allele num: 10332
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European (Finnish)
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allele frequency: 0.0e0
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InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
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BaseQRankSum
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MQ
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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QD
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66634
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European (Finnish)
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East Asian
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Latino
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Other
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ReadPosRankSum
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FS
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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DP
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QD
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

Other
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European (Non-Finnish)
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allele num: 66622
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African
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South Asian
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East Asian
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European (Finnish)
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ReadPosRankSum
type: SiteQuality
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QD
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MQ
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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FS
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 7
allele frequency: 1.05095637029697e-4
allele num: 66606
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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ClippingRankSum
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VQSLOD
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DP
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InbreedingCoeff
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MQ
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MQRankSum
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FS
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501366243281386e-5
allele num: 66606
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
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BaseQRankSum
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FS
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DP
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11550
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.501456412720339e-5
allele num: 66602
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.97e-1

DP
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VQSLOD
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ReadPosRankSum
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FS
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 11
allele frequency: 1.65209816466913e-4
allele num: 66582
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

Latino
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allele count: 3
allele frequency: 2.598302442404296e-4
allele num: 11546
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.91e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.936e1

FS
type: SiteQuality
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DP
type: SiteQuality
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QD
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.502855425308085e-5
allele num: 66540
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 10272
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
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VQSLOD
type: SiteQuality
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FS
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BaseQRankSum
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QD
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MQ
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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allele num: 16474
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European (Finnish)
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African
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East Asian
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Latino
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FS
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ReadPosRankSum
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MQ
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MQRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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QD
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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allele num: 66410
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South Asian
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European (Finnish)
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African
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InbreedingCoeff
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VQSLOD
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DP
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MQRankSum
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QD
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FS
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ReadPosRankSum
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MQ
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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Other
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European (Finnish)
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African
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European (Non-Finnish)
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South Asian
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QD
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FS
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
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ClippingRankSum
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MQRankSum
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10100
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509753004408479e-5
allele num: 66236
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

QD
type: SiteQuality
SIO_000300: 9.470000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.025e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.023069e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.663e0

FS
type: SiteQuality
SIO_000300: 3.58e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

GenotypeQuality
all individuals: 2324
bin: 3.25e1
variant carriers: 47

GenotypeQuality
all individuals: 2239
bin: 3.75e1
variant carriers: 45

GenotypeQuality
all individuals: 7402
bin: 2.5e0
variant carriers: 90

GenotypeQuality
all individuals: 16236
bin: 9.75e1
variant carriers: 47

GenotypeQuality
all individuals: 1827
bin: 5.75e1
variant carriers: 23

GenotypeQuality
all individuals: 1952
bin: 5.25e1
variant carriers: 25

GenotypeQuality
all individuals: 2348
bin: 2.75e1
variant carriers: 65

GenotypeQuality
all individuals: 1995
bin: 6.75e1
variant carriers: 11

GenotypeQuality
all individuals: 2420
bin: 6.25e1
variant carriers: 16

GenotypeQuality
all individuals: 1662
bin: 7.75e1
variant carriers: 9

GenotypeQuality
all individuals: 2772
bin: 2.25e1
variant carriers: 68

GenotypeQuality
all individuals: 1477
bin: 8.75e1
variant carriers: 7

GenotypeQuality
all individuals: 1561
bin: 8.25e1
variant carriers: 8

GenotypeQuality
all individuals: 1449
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1852
bin: 7.25e1
variant carriers: 11

East Asian
type: Population
allele count: 28
allele frequency: 4.227053140096618e-3
allele num: 6624
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 7.082152974504249e-3
allele num: 706
num of homozygotes: 0

African
type: Population
allele count: 40
allele frequency: 5.216484089723527e-3
allele num: 7668
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 1.211631663974152e-3
allele num: 4952
num of homozygotes: 0

South Asian
type: Population
allele count: 162
allele frequency: 1.271984924623116e-2
allele num: 12736
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 205
allele frequency: 4.040842072064969e-3
allele num: 50732
num of homozygotes: 0

Latino
type: Population
allele count: 32
allele frequency: 3.507233669443227e-3
allele num: 9124
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.178e-1

QD
type: SiteQuality
SIO_000300: 2.05e0

VQSLOD
type: SiteQuality
SIO_000300: 2.95e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.6e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

DP
type: SiteQuality
SIO_000300: 2.334289e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.38e-1

GenotypeQuality
all individuals: 1852
bin: 7.25e1
variant carriers: 1678

GenotypeQuality
all individuals: 7402
bin: 2.5e0
variant carriers: 672

GenotypeQuality
all individuals: 1995
bin: 6.75e1
variant carriers: 1711

GenotypeQuality
all individuals: 1952
bin: 5.25e1
variant carriers: 1664

GenotypeQuality
all individuals: 2772
bin: 2.25e1
variant carriers: 1393

GenotypeQuality
all individuals: 2067
bin: 4.75e1
variant carriers: 1701

GenotypeQuality
all individuals: 2158
bin: 1.25e1
variant carriers: 1033

GenotypeQuality
all individuals: 1827
bin: 5.75e1
variant carriers: 1600

GenotypeQuality
all individuals: 2239
bin: 3.75e1
variant carriers: 1618

GenotypeQuality
all individuals: 1449
bin: 9.25e1
variant carriers: 1400

GenotypeQuality
all individuals: 2291
bin: 4.25e1
variant carriers: 1790

GenotypeQuality
all individuals: 2420
bin: 6.25e1
variant carriers: 1640

GenotypeQuality
all individuals: 1662
bin: 7.75e1
variant carriers: 1523

GenotypeQuality
all individuals: 2348
bin: 2.75e1
variant carriers: 1450

GenotypeQuality
all individuals: 2324
bin: 3.25e1
variant carriers: 1555

Latino
type: Population
allele count: 4107
allele frequency: 4.501315212626041e-1
allele num: 9124
num of homozygotes: 0

East Asian
type: Population
allele count: 2945
allele frequency: 4.445954106280193e-1
allele num: 6624
num of homozygotes: 0

African
type: Population
allele count: 3150
allele frequency: 4.107981220657277e-1
allele num: 7668
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1834
allele frequency: 3.703554119547657e-1
allele num: 4952
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 21475
allele frequency: 4.233028463297327e-1
allele num: 50732
num of homozygotes: 0

Other
type: Population
allele count: 290
allele frequency: 4.107648725212464e-1
allele num: 706
num of homozygotes: 0

South Asian
type: Population
allele count: 5758
allele frequency: 4.521042713567839e-1
allele num: 12736
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.95e0

QD
type: SiteQuality
SIO_000300: 2.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

MQRankSum
type: SiteQuality
SIO_000300: 1.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.178e-1

DP
type: SiteQuality
SIO_000300: 2.334289e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.38e-1

GenotypeQuality
all individuals: 2239
bin: 3.75e1
variant carriers: 42

GenotypeQuality
all individuals: 1852
bin: 7.25e1
variant carriers: 8

GenotypeQuality
all individuals: 1827
bin: 5.75e1
variant carriers: 11

GenotypeQuality
all individuals: 2224
bin: 1.75e1
variant carriers: 23

GenotypeQuality
all individuals: 2324
bin: 3.25e1
variant carriers: 36

GenotypeQuality
all individuals: 2425
bin: 7.5e0
variant carriers: 85

GenotypeQuality
all individuals: 2158
bin: 1.25e1
variant carriers: 34

GenotypeQuality
all individuals: 2348
bin: 2.75e1
variant carriers: 22

GenotypeQuality
all individuals: 1477
bin: 8.75e1
variant carriers: 8

GenotypeQuality
all individuals: 1561
bin: 8.25e1
variant carriers: 10

GenotypeQuality
all individuals: 1449
bin: 9.25e1
variant carriers: 7

GenotypeQuality
all individuals: 2420
bin: 6.25e1
variant carriers: 20

GenotypeQuality
all individuals: 2067
bin: 4.75e1
variant carriers: 15

GenotypeQuality
all individuals: 1662
bin: 7.75e1
variant carriers: 7

GenotypeQuality
all individuals: 1995
bin: 6.75e1
variant carriers: 14

Other
type: Population
allele count: 2
allele frequency: 2.8328611898017e-3
allele num: 706
num of homozygotes: 0

Latino
type: Population
allele count: 19
allele frequency: 2.082419991231916e-3
allele num: 9124
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 182
allele frequency: 3.587479303004021e-3
allele num: 50732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 9
allele frequency: 1.817447495961228e-3
allele num: 4952
num of homozygotes: 0

African
type: Population
allele count: 18
allele frequency: 2.347417840375587e-3
allele num: 7668
num of homozygotes: 0

East Asian
type: Population
allele count: 14
allele frequency: 2.113526570048309e-3
allele num: 6624
num of homozygotes: 0

South Asian
type: Population
allele count: 42
allele frequency: 3.297738693467337e-3
allele num: 12736
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.965e1

VQSLOD
type: SiteQuality
SIO_000300: 2.95e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.178e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.6e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.6e-2

DP
type: SiteQuality
SIO_000300: 2.334289e6

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1060
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2613
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5257
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 3104
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7619
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 847
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2000
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30690
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9816
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16326
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 7.901668129938542e-4
allele num: 11390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65132
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.281e0

QD
type: SiteQuality
SIO_000300: 1.419e1

VQSLOD
type: SiteQuality
SIO_000300: 9.71e-1

DP
type: SiteQuality
SIO_000300: 1.88838e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

FS
type: SiteQuality
SIO_000300: 3.494e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.14e-1

GenotypeQuality
all individuals: 837
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1268
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28669
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5235
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3032
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1055
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1170
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1972
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7191
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11350
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9770
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.21654501216545e-4
allele num: 8220
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.439e1

DP
type: SiteQuality
SIO_000300: 1.86201e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.62e0

VQSLOD
type: SiteQuality
SIO_000300: 4.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.55e-1

MQ
type: SiteQuality
SIO_000300: 5.996e1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

GenotypeQuality
all individuals: 409
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28544
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1343
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1807
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5087
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1893
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3541
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2792
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 961
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11284
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16122
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9688
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.554388037429664e-5
allele num: 64334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8160
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.83e0

FS
type: SiteQuality
SIO_000300: 9.997e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.86e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.063e-1

MQ
type: SiteQuality
SIO_000300: 5.743e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.37e-1

QD
type: SiteQuality
SIO_000300: 9.789999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

DP
type: SiteQuality
SIO_000300: 1.859922e6

GenotypeQuality
all individuals: 790
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1708
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2341
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4295
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3089
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6178
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1818
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5041
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2633
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 712
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11328
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9690
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.55115716324378e-5
allele num: 64468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16244
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.548e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.773e1

DP
type: SiteQuality
SIO_000300: 1.767898e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

QD
type: SiteQuality
SIO_000300: 1.492e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.17e0

GenotypeQuality
all individuals: 134
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1704
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1822
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4305
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3084
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5042
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 2349
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 713
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2622
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6138
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64436
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 6.195786864931846e-4
allele num: 9684
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16234
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8138
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.84e0

QD
type: SiteQuality
SIO_000300: 1.717e1

VQSLOD
type: SiteQuality
SIO_000300: -3.603e-1

FS
type: SiteQuality
SIO_000300: 1.0416e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.01e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

DP
type: SiteQuality
SIO_000300: 1.766693e6

GenotypeQuality
all individuals: 18628
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2041
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2333
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11288
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16168
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8038
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.566170712607674e-5
allele num: 63850
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.113e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.1e-2

QD
type: SiteQuality
SIO_000300: 1.794e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.54e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.669177e6

VQSLOD
type: SiteQuality
SIO_000300: -7.32e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.064e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4977
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.56897200953935e-5
allele num: 63736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16154
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8018
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.091175240485153e-4
allele num: 9564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11286
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.72e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.74e-1

FS
type: SiteQuality
SIO_000300: 3.332e0

DP
type: SiteQuality
SIO_000300: 1.652778e6

QD
type: SiteQuality
SIO_000300: 1.79e1

GenotypeQuality
all individuals: 3491
bin: 6.75e1
variant carriers: 178

GenotypeQuality
all individuals: 4485
bin: 3.75e1
variant carriers: 70

GenotypeQuality
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variant carriers: 9

GenotypeQuality
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variant carriers: 41

GenotypeQuality
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variant carriers: 98

GenotypeQuality
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variant carriers: 12484

GenotypeQuality
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variant carriers: 62

GenotypeQuality
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bin: 4.75e1
variant carriers: 110

GenotypeQuality
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variant carriers: 42

GenotypeQuality
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variant carriers: 57

GenotypeQuality
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variant carriers: 171

GenotypeQuality
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variant carriers: 168

GenotypeQuality
all individuals: 1861
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variant carriers: 171

GenotypeQuality
all individuals: 633
bin: 5.75e1
variant carriers: 105

GenotypeQuality
all individuals: 2857
bin: 5.25e1
variant carriers: 142

European (Finnish)
type: Population
allele count: 690
allele frequency: 1.060559483553643e-1
allele num: 6506
num of homozygotes: 36

Other
type: Population
allele count: 124
allele frequency: 1.428571428571428e-1
allele num: 868
num of homozygotes: 9

Latino
type: Population
allele count: 686
allele frequency: 6.121720506871319e-2
allele num: 11206
num of homozygotes: 25

European (Non-Finnish)
type: Population
allele count: 6336
allele frequency: 1.007217117604044e-1
allele num: 62906
num of homozygotes: 305

African
type: Population
allele count: 886
allele frequency: 9.353885135135136e-2
allele num: 9472
num of homozygotes: 38

East Asian
type: Population
allele count: 4259
allele frequency: 5.408940817881636e-1
allele num: 7874
num of homozygotes: 1145

South Asian
type: Population
allele count: 2762
allele frequency: 1.720872274143302e-1
allele num: 16050
num of homozygotes: 250

VQSLOD
type: SiteQuality
SIO_000300: 5.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.037e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.0e-2

QD
type: SiteQuality
SIO_000300: 1.7e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.67e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.598181e6

GenotypeQuality
all individuals: 4195
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5162
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5871
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4905
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variant carriers: 6

GenotypeQuality
all individuals: 3349
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.229035487100004e-5
allele num: 61938
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.036688957166094e-5
allele num: 11066
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.330716637123322e-5
allele num: 15796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.567394094993582e-4
allele num: 7790
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.816e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.565e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.694e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.53e-1

DP
type: SiteQuality
SIO_000300: 1.533701e6

QD
type: SiteQuality
SIO_000300: 2.582e1

GenotypeQuality
all individuals: 625
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
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variant carriers: 0

GenotypeQuality
all individuals: 483
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variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 16
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GenotypeQuality
all individuals: 401
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GenotypeQuality
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GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 1110
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2370
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variant carriers: 0

GenotypeQuality
all individuals: 1069
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66452
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.864734299516908e-4
allele num: 10350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.066e0

MQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

DP
type: SiteQuality
SIO_000300: 1.976755e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.091e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.0672e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.72e-1

QD
type: SiteQuality
SIO_000300: 1.82e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.0e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 465
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variant carriers: 0

GenotypeQuality
all individuals: 5377
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GenotypeQuality
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GenotypeQuality
all individuals: 14311
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variant carriers: 153

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3708
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 7.79896013864818e-4
allele num: 11540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66480
num of homozygotes: 0

African
type: Population
allele count: 147
allele frequency: 1.420838971583221e-2
allele num: 10346
num of homozygotes: 2

QD
type: SiteQuality
SIO_000300: 1.305e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.29e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.8e0

DP
type: SiteQuality
SIO_000300: 1.977682e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.679e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3730
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504121292341014e-5
allele num: 66484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.62e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.167e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -7.21e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

DP
type: SiteQuality
SIO_000300: 1.980281e6

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 15
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 230
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GenotypeQuality
all individuals: 7358
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 7.53e0

VQSLOD
type: SiteQuality
SIO_000300: 7.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-2

DP
type: SiteQuality
SIO_000300: 1.98151e6

GenotypeQuality
all individuals: 221
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4429
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 357
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7345
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.75e1
variant carriers: 259

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3295
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 353
bin: 4.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.015037593984962e-5
allele num: 66500
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 4.424778761061947e-3
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 242
allele frequency: 2.336358370341765e-2
allele num: 10358
num of homozygotes: 4

East Asian
type: Population
allele count: 1
allele frequency: 1.159823706796567e-4
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Latino
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allele count: 17
allele frequency: 1.472626472626473e-3
allele num: 11544
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.16e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.763e0

VQSLOD
type: SiteQuality
SIO_000300: 4.57e0

FS
type: SiteQuality
SIO_000300: 6.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-1

QD
type: SiteQuality
SIO_000300: 1.322e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-1

DP
type: SiteQuality
SIO_000300: 1.984701e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.13e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 18

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2374
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 18
allele frequency: 1.094624179031866e-3
allele num: 16444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66334
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.74e-1

DP
type: SiteQuality
SIO_000300: 1.987446e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.123e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.95e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.3e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

GenotypeQuality
all individuals: 258
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 10
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 140
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7472
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variant carriers: 0

GenotypeQuality
all individuals: 14168
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 197
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503488092374308e-5
allele num: 66512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -8.686e-1

DP
type: SiteQuality
SIO_000300: 1.99864e6

FS
type: SiteQuality
SIO_000300: 3.315e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.033e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 149
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
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GenotypeQuality
all individuals: 100
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18184
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 229
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GenotypeQuality
all individuals: 5513
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variant carriers: 0

GenotypeQuality
all individuals: 59
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GenotypeQuality
all individuals: 14182
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 203
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variant carriers: 0

GenotypeQuality
all individuals: 98
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variant carriers: 0

GenotypeQuality
all individuals: 116
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variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 4515
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GenotypeQuality
all individuals: 2438
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variant carriers: 0

GenotypeQuality
all individuals: 7541
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variant carriers: 0

GenotypeQuality
all individuals: 197
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variant carriers: 0

GenotypeQuality
all individuals: 3807
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.72e-1

FS
type: SiteQuality
SIO_000300: 1.228e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -8.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.052e0

DP
type: SiteQuality
SIO_000300: 2.001217e6

QD
type: SiteQuality
SIO_000300: 1.168e1

VQSLOD
type: SiteQuality
SIO_000300: 6.66e-1

GenotypeQuality
all individuals: 4515
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
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variant carriers: 0

GenotypeQuality
all individuals: 5513
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 5
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 8
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2438
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variant carriers: 0

GenotypeQuality
all individuals: 116
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GenotypeQuality
all individuals: 3807
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
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variant carriers: 0

GenotypeQuality
all individuals: 14182
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.49e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.052e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.72e-1

DP
type: SiteQuality
SIO_000300: 2.001217e6

FS
type: SiteQuality
SIO_000300: 1.228e0

QD
type: SiteQuality
SIO_000300: 1.168e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.37e-1

GenotypeQuality
all individuals: 3801
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 89
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.158211721102618e-4
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.460000000000001e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.607e0

VQSLOD
type: SiteQuality
SIO_000300: -2.377e-1

DP
type: SiteQuality
SIO_000300: 2.004327e6

MQRankSum
type: SiteQuality
SIO_000300: -8.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.11e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 18457
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.003453972067878e-5
allele num: 66590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.478e0

FS
type: SiteQuality
SIO_000300: 1.3499e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.03e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.19e-1

DP
type: SiteQuality
SIO_000300: 2.008281e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.331e1

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 68
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 158
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18439
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14190
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7631
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5557
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3367
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3821
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501862309263487e-5
allele num: 66584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.258e1

DP
type: SiteQuality
SIO_000300: 2.008764e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.132e0

MQRankSum
type: SiteQuality
SIO_000300: -1.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.185e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e0

FS
type: SiteQuality
SIO_000300: 2.675e0

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18446
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3826
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2453
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4560
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3366
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5562
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7639
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.00924e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.139e0

FS
type: SiteQuality
SIO_000300: 1.2177e1

VQSLOD
type: SiteQuality
SIO_000300: -2.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.004e0

QD
type: SiteQuality
SIO_000300: 1.525e1

GenotypeDepth
all individuals: 55
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3843
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2453
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18510
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4568
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14196
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7633
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3366
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5567
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501276084671971e-5
allele num: 66610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

VQSLOD
type: SiteQuality
SIO_000300: 1.51e0

FS
type: SiteQuality
SIO_000300: 5.133e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

DP
type: SiteQuality
SIO_000300: 2.01061e6

MQRankSum
type: SiteQuality
SIO_000300: -5.014e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

MQ
type: SiteQuality
SIO_000300: 4.712e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

QD
type: SiteQuality
SIO_000300: 8.32e0