2-86677018-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86677018
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86677018
    reference: chr 2
allele count: 23
allele frequency: 1.89797164595402e-4
allele num: 121182
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.275A>G
  hgvsp: ENSP00000394691.1:p.His92Arg
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000466058
  gene symbol: KDM3A
  hgvsc: ENST00000466058.1:n.446A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.275A>G
  hgvsp: ENSP00000396561.1:p.His92Arg
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.275A>G
  hgvsp: ENSP00000397660.1:p.His92Arg
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.275A>G
  hgvsp: ENSP00000323659.5:p.His92Arg
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.275A>G
  hgvsp: ENSP00000386660.1:p.His92Arg
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.82A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.275A>G
  hgvsp: ENSP00000386516.1:p.His92Arg
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.187-1208A>G
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4057
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6559
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2594
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5901
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 7984
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2432
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
hgvs: p.His92Arg
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ

2-86677030-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86677030
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86677030
    reference: chr 2
allele count: 1
allele frequency: 8.255184255712587e-6
allele num: 121136
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.287T>C
  hgvsp: ENSP00000386516.1:p.Leu96Ser
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.287T>C
  hgvsp: ENSP00000323659.5:p.Leu96Ser
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.287T>C
  hgvsp: ENSP00000386660.1:p.Leu96Ser
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.94T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.187-1196T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.287T>C
  hgvsp: ENSP00000397660.1:p.Leu96Ser
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.287T>C
  hgvsp: ENSP00000394691.1:p.Leu96Ser
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.287T>C
  hgvsp: ENSP00000396561.1:p.Leu96Ser
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7985
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5336
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6413
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5907
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7268
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2331
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38221
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu96Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

2-86677038-C-CTATACCTTCATTATTCTATTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86677038
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86677059
    reference: chr 2
allele count: 1
allele frequency: 8.262277744728666e-6
allele num: 121032
alternate allele: CTATACCTTCATTATTCTATTT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: protein_altering_variant
  consequence: stop_gained
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: protein_altering_variant
  consequence: stop_gained
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: protein_altering_variant
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: protein_altering_variant
  consequence: stop_gained
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: protein_altering_variant
  consequence: stop_gained
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: protein_altering_variant
  consequence: stop_gained
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: stop gained
filter: VQSRTrancheINDEL99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6570
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5907
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6308
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7269
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5330
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7985
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2672
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1458
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8279
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2327
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2428
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg99delinsLeuTyrLeuHisTyrSerIleTer
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

2-86677040-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86677040
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86677040
    reference: chr 2
allele count: 3
allele frequency: 2.478765244406253e-5
allele num: 121028
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.187-1186A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.297A>G
  hgvsp: ENST00000452034.1:c.297A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.297A>G
  hgvsp: ENST00000441719.1:c.297A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.297A>G
  hgvsp: ENST00000409556.1:c.297A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.104A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.297A>G
  hgvsp: ENST00000409064.1:c.297A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.297A>G
  hgvsp: ENST00000427678.1:c.297A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.297A>G
  hgvsp: ENST00000312912.5:c.297A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5342
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7984
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6277
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5906
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6569
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7741
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3026
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1460
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg99Arg
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

2-86677043-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86677043
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86677043
    reference: chr 2
allele count: 1
allele frequency: 8.266785708380868e-6
allele num: 120966
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.300G>A
  hgvsp: ENST00000409556.1:c.300G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.187-1183G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.300G>A
  hgvsp: ENST00000409064.1:c.300G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.300G>A
  hgvsp: ENST00000312912.5:c.300G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.300G>A
  hgvsp: ENST00000427678.1:c.300G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.300G>A
  hgvsp: ENST00000452034.1:c.300G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.107G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.300G>A
  hgvsp: ENST00000441719.1:c.300G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7267
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7741
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5341
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7985
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4065
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5906
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38220
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Lys100Lys
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-86677048-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86677048
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86677048
    reference: chr 2
allele count: 1
allele frequency: 8.281847845891375e-6
allele num: 120746
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.305C>T
  hgvsp: ENSP00000396561.1:p.Pro102Leu
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.305C>T
  hgvsp: ENSP00000386516.1:p.Pro102Leu
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.305C>T
  hgvsp: ENSP00000386660.1:p.Pro102Leu
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.187-1178C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.305C>T
  hgvsp: ENSP00000394691.1:p.Pro102Leu
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.305C>T
  hgvsp: ENSP00000323659.5:p.Pro102Leu
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.112C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.305C>T
  hgvsp: ENSP00000397660.1:p.Pro102Leu
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5890
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5907
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7986
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3026
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7784
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro102Leu
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

http://identifiers.org/exac.variant/2-86677052-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86677052
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86677052
    reference: chr 2
allele count: 1
allele frequency: 8.28239659427852e-6
allele num: 120738
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.187-1174A>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.309A>C
  hgvsp: ENSP00000386660.1:p.Glu103Asp
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.309A>C
  hgvsp: ENSP00000397660.1:p.Glu103Asp
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.309A>C
  hgvsp: ENSP00000394691.1:p.Glu103Asp
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.309A>C
  hgvsp: ENSP00000386516.1:p.Glu103Asp
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.116A>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.309A>C
  hgvsp: ENSP00000323659.5:p.Glu103Asp
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.309A>C
  hgvsp: ENSP00000396561.1:p.Glu103Asp
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5906
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5330
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6585
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7982
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2276
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1826
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu103Asp
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

2-86677055-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86677055
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86677055
    reference: chr 2
allele count: 2
allele frequency: 1.658704883227176e-5
allele num: 120576
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.187-1171T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.312T>C
  hgvsp: ENST00000427678.1:c.312T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.312T>C
  hgvsp: ENST00000312912.5:c.312T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.312T>C
  hgvsp: ENST00000441719.1:c.312T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.119T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.312T>C
  hgvsp: ENST00000409064.1:c.312T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.312T>C
  hgvsp: ENST00000452034.1:c.312T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.312T>C
  hgvsp: ENST00000409556.1:c.312T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7741
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7265
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7983
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5906
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6573
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3026
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1826
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ile104Ile
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff

2-86677059-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86677059
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86677059
    reference: chr 2
allele count: 1
allele frequency: 8.307717869901138e-6
allele num: 120370
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.316G>C
  hgvsp: ENSP00000396561.1:p.Glu106Gln
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.316G>C
  hgvsp: ENSP00000386516.1:p.Glu106Gln
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.187-1167G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.316G>C
  hgvsp: ENSP00000397660.1:p.Glu106Gln
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.316G>C
  hgvsp: ENSP00000323659.5:p.Glu106Gln
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.316G>C
  hgvsp: ENSP00000386660.1:p.Glu106Gln
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.316G>C
  hgvsp: ENSP00000394691.1:p.Glu106Gln
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.123G>C
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5479
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5213
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6574
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5907
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7984
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2258
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu106Gln
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

2-86677063-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86677063
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86677063
    reference: chr 2
allele count: 1
allele frequency: 8.336668000533546e-6
allele num: 119952
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.320G>T
  hgvsp: ENSP00000386516.1:p.Arg107Leu
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.187-1163G>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.320G>T
  hgvsp: ENSP00000394691.1:p.Arg107Leu
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.320G>T
  hgvsp: ENSP00000386660.1:p.Arg107Leu
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.320G>T
  hgvsp: ENSP00000397660.1:p.Arg107Leu
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.320G>T
  hgvsp: ENSP00000323659.5:p.Arg107Leu
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.127G>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.320G>T
  hgvsp: ENSP00000396561.1:p.Arg107Leu
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5907
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7984
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6550
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5075
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5143
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3026
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg107Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

2-86677067-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86677067
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86677067
    reference: chr 2
allele count: 2
allele frequency: 1.670201927413024e-5
allele num: 119746
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.187-1159T>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.324T>G
  hgvsp: ENSP00000386516.1:p.Ile108Met
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.324T>G
  hgvsp: ENSP00000394691.1:p.Ile108Met
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.131T>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.324T>G
  hgvsp: ENSP00000386660.1:p.Ile108Met
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.324T>G
  hgvsp: ENSP00000323659.5:p.Ile108Met
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.324T>G
  hgvsp: ENSP00000396561.1:p.Ile108Met
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.324T>G
  hgvsp: ENSP00000397660.1:p.Ile108Met
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4849
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7982
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5908
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6542
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7741
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1479
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1826
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3026
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ile108Met
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

2-86677094-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86677094
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86677094
    reference: chr 2
allele count: 2
allele frequency: 1.696122663591031e-5
allele num: 117916
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.342+9A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.342+9A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.149+9A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.342+9A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.187-1132A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.342+9A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.342+9A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.342+9A>G
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6453
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7736
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2412
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5907
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4413
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3152
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7980
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2081
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3026
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP

2-86677103-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86677103
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86677103
    reference: chr 2
allele count: 1
allele frequency: 8.524713143402724e-6
allele num: 117306
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.342+18T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.342+18T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.342+18T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.342+18T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.342+18T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.149+18T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.342+18T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.187-1123T>C
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5908
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7978
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7735
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6439
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1825
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

2-86677105-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86677105
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86677105
    reference: chr 2
allele count: 8
allele frequency: 6.825472663981981e-5
allele num: 117208
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.342+20A>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.149+20A>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.342+20A>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.342+20A>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.342+20A>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.342+20A>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.342+20A>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.187-1121A>T
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5907
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2641
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4065
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7976
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7735
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4255
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6436
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1406
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3786
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

2-86677110-ACTC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86677110
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86677107
    reference: chr 2
allele count: 1
allele frequency: 8.562230289745873e-6
allele num: 116792
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.342+28_342+30delCCT
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.342+28_342+30delCCT
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.187-1113_187-1111delCCT
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.342+28_342+30delCCT
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.149+28_149+30delCCT
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.342+28_342+30delCCT
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.342+28_342+30delCCT
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.342+28_342+30delCCT
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7975
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6424
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2425
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5908
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7735
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38218
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2661
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3461
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: ACTC
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP

2-86677123-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86677123
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86677123
    reference: chr 2
allele count: 1
allele frequency: 8.636622735045688e-6
allele num: 115786
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.149+38G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.342+38G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.342+38G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.342+38G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.342+38G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.187-1103G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.342+38G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.342+38G>A
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7735
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5910
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7980
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2905
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1826
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2653
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2378
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

2-86677128-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86677128
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86677128
    reference: chr 2
allele count: 5
allele frequency: 4.338545372507505e-5
allele num: 115246
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.342+43T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.342+43T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.342+43T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.342+43T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.149+43T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.342+43T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.342+43T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.187-1098T>C
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7978
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3959
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6370
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7727
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5907
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1825
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2966
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2542
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38214
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

2-86677131-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86677131
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86677131
    reference: chr 2
allele count: 1
allele frequency: 8.690513435533772e-6
allele num: 115068
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.342+46T>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.342+46T>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.342+46T>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.342+46T>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.187-1095T>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.342+46T>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.149+46T>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.342+46T>A
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3931
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5907
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4065
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2249
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7728
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7974
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1388
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2420
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

2-86677131-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86677131
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86677131
    reference: chr 2
allele count: 1
allele frequency: 8.690513435533772e-6
allele num: 115068
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.342+46T>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.342+46T>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.342+46T>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.187-1095T>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.342+46T>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.342+46T>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.149+46T>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.342+46T>G
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2249
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3931
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7974
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7728
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5907
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4065
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3021
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1388
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1826
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

2-86678175-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678175
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678175
    reference: chr 2
allele count: 1
allele frequency: 9.324704873090767e-6
allele num: 107242
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.343-51A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.343-51A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.343-51A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.187-51A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.343-51A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.343-51A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.343-51A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.150-51A>G
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5917
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15177
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13424
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11441
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7254
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5765
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1133
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1838
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3209
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

2-86678179-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678179
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678179
    reference: chr 2
allele count: 3
allele frequency: 2.790334282046989e-5
allele num: 107514
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.343-47T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.343-47T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.343-47T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.343-47T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.187-47T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.343-47T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.150-47T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.343-47T>C
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13391
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5907
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7350
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1056
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3349
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3165
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16215
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

2-86678182-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678182
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678182
    reference: chr 2
allele count: 3
allele frequency: 2.792256142963514e-5
allele num: 107440
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.343-44T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.343-44T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.343-44T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.343-44T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.187-44T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.343-44T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.343-44T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.150-44T>C
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5917
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10526
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7471
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2976
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5648
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5453
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3357
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-86678185-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678185
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678185
    reference: chr 2
allele count: 1
allele frequency: 9.284016636957814e-6
allele num: 107712
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.343-41T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.343-41T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.343-41T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.343-41T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.343-41T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.343-41T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.150-41T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.187-41T>C
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8024
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5895
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18879
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2545
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12661
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 905
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2532
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5516
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

2-86678187-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678187
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678187
    reference: chr 2
allele count: 1
allele frequency: 9.261660430481977e-6
allele num: 107972
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.150-39A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.343-39A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.343-39A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.343-39A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.187-39A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.343-39A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.343-39A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.343-39A>G
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2591
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20579
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5887
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6671
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12051
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2834
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5103
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

2-86678190-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678190
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678190
    reference: chr 2
allele count: 19
allele frequency: 1.757826955813781e-4
allele num: 108088
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.343-36G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.150-36G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.343-36G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.343-36G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.343-36G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.343-36G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.187-36G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.343-36G>A
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8562
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 22918
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5844
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2682
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5081
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10930
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3562
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4376
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1728
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1869
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD

2-86678195-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678195
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678196
    reference: chr 2
allele count: 7
allele frequency: 6.405680923882208e-5
allele num: 109278
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.343-30dupA
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.343-30dupA
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.343-30dupA
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.343-30dupA
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.343-30dupA
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.343-30dupA
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.187-30dupA
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.150-30dupA
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8481
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9334
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5584
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26966
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5802
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: DP

2-86678196-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678196
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678196
    reference: chr 2
allele count: 1
allele frequency: 9.159354448698456e-6
allele num: 109178
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.343-30A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.343-30A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.150-30A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.187-30A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.343-30A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.343-30A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.343-30A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.343-30A>G
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5532
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8096
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1041
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31802
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3696
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

2-86678197-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678197
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678197
    reference: chr 2
allele count: 2
allele frequency: 1.825250515633271e-5
allele num: 109574
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.343-29T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.343-29T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.343-29T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.150-29T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.343-29T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.343-29T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.187-29T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.343-29T>C
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7627
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9614
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5445
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28127
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3877
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5654
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2600
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

2-86678204-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678204
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678204
    reference: chr 2
allele count: 3
allele frequency: 2.684804009307321e-5
allele num: 111740
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.343-22A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.343-22A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.150-22A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.343-22A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.187-22A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.343-22A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.343-22A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.343-22A>G
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4634
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2984
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4525
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31944
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4716
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38559
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1062
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2121
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: A
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

2-86678207-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678207
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678207
    reference: chr 2
allele count: 22
allele frequency: 1.952882276705665e-4
allele num: 112654
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.343-19G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.343-19G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.187-19G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.343-19G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.150-19G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.343-19G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.343-19G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.343-19G>A
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4098
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33258
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11191
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1050
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4280
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1259
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4237
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 1
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

2-86678209-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678209
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678209
    reference: chr 2
allele count: 1
allele frequency: 8.835327172165185e-6
allele num: 113182
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.343-17G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.343-17G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.343-17G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.343-17G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.150-17G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.187-17G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.343-17G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.343-17G>C
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3859
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3090
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11700
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33310
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1062
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2743
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

2-86678213-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678213
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678213
    reference: chr 2
allele count: 2
allele frequency: 1.746541847142657e-5
allele num: 114512
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.343-13T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.343-13T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.150-13T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.187-13T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.343-13T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.343-13T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.343-13T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.343-13T>C
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34646
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3059
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12058
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2656
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2743
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3461
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP

2-86678219-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678219
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678219
    reference: chr 2
allele count: 1
allele frequency: 8.582659594555161e-6
allele num: 116514
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.187-7G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.343-7G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.343-7G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.343-7G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.343-7G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.343-7G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.150-7G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.343-7G>C
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36437
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2744
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
hgvs: c.343-7G>C
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

2-86678223-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678223
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678223
    reference: chr 2
allele count: 8
allele frequency: 6.793247511973099e-5
allele num: 117764
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.343-3T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.150-3T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.343-3T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.343-3T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.187-3T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.343-3T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.343-3T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.343-3T>C
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37598
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3178
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12774
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1056
  bin: 7.25e1
  variant carriers: 0
hgvs: c.343-3T>C
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

2-86678224-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678224
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678224
    reference: chr 2
allele count: 3
allele frequency: 2.542588354945334e-5
allele num: 117990
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.187-2A>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.343-2A>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.343-2A>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.343-2A>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.343-2A>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.150-2A>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.343-2A>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.343-2A>T
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: splice acceptor
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3205
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12841
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37726
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46535
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1057
  bin: 7.25e1
  variant carriers: 0
hgvs: c.343-2A>T
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-86678227-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678227
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678227
    reference: chr 2
allele count: 1
allele frequency: 8.43397881384522e-6
allele num: 118568
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.344C>T
  hgvsp: ENSP00000386660.1:p.Thr115Met
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.344C>T
  hgvsp: ENSP00000394691.1:p.Thr115Met
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.344C>T
  hgvsp: ENSP00000386516.1:p.Thr115Met
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.188C>T
  hgvsp: ENSP00000438324.1:p.Thr63Met
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.344C>T
  hgvsp: ENSP00000397660.1:p.Thr115Met
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.344C>T
  hgvsp: ENSP00000396561.1:p.Thr115Met
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.344C>T
  hgvsp: ENSP00000323659.5:p.Thr115Met
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.151C>T
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38007
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13076
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3273
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4705
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr115Met
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ

2-86678228-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678228
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678228
    reference: chr 2
allele count: 5
allele frequency: 4.206771218954028e-5
allele num: 118856
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.152G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.345G>A
  hgvsp: ENST00000452034.1:c.345G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.345G>A
  hgvsp: ENST00000312912.5:c.345G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.345G>A
  hgvsp: ENST00000427678.1:c.345G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.345G>A
  hgvsp: ENST00000409064.1:c.345G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.189G>A
  hgvsp: ENST00000542128.1:c.189G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.345G>A
  hgvsp: ENST00000409556.1:c.345G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.345G>A
  hgvsp: ENST00000441719.1:c.345G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38125
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13174
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3299
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2752
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
hgvs: c.345G>A
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

2-86678228-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678228
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678228
    reference: chr 2
allele count: 6
allele frequency: 5.048125462744834e-5
allele num: 118856
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.345G>C
  hgvsp: ENST00000312912.5:c.345G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.189G>C
  hgvsp: ENST00000542128.1:c.189G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.345G>C
  hgvsp: ENST00000452034.1:c.345G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.345G>C
  hgvsp: ENST00000427678.1:c.345G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.345G>C
  hgvsp: ENST00000441719.1:c.345G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.345G>C
  hgvsp: ENST00000409064.1:c.345G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.345G>C
  hgvsp: ENST00000409556.1:c.345G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.152G>C
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38125
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3299
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13174
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47305
  bin: 6.25e1
  variant carriers: 0
hgvs: c.345G>C
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD

http://identifiers.org/exac.variant/2-86678233-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678233
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678233
    reference: chr 2
allele count: 6
allele frequency: 5.017477546787978e-5
allele num: 119582
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.157A>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.350A>C
  hgvsp: ENSP00000386516.1:p.Lys117Thr
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.350A>C
  hgvsp: ENSP00000323659.5:p.Lys117Thr
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.194A>C
  hgvsp: ENSP00000438324.1:p.Lys65Thr
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.350A>C
  hgvsp: ENSP00000396561.1:p.Lys117Thr
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.350A>C
  hgvsp: ENSP00000394691.1:p.Lys117Thr
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.350A>C
  hgvsp: ENSP00000397660.1:p.Lys117Thr
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.350A>C
  hgvsp: ENSP00000386660.1:p.Lys117Thr
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13445
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38474
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2750
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Lys117Thr
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

2-86678233-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678233
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678233
    reference: chr 2
allele count: 3
allele frequency: 2.508738773393989e-5
allele num: 119582
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.350A>G
  hgvsp: ENSP00000386660.1:p.Lys117Arg
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.350A>G
  hgvsp: ENSP00000386516.1:p.Lys117Arg
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.350A>G
  hgvsp: ENSP00000397660.1:p.Lys117Arg
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.157A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.194A>G
  hgvsp: ENSP00000438324.1:p.Lys65Arg
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.350A>G
  hgvsp: ENSP00000323659.5:p.Lys117Arg
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.350A>G
  hgvsp: ENSP00000396561.1:p.Lys117Arg
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.350A>G
  hgvsp: ENSP00000394691.1:p.Lys117Arg
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13445
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38474
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3277
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2750
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Lys117Arg
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

2-86678235-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678235
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678235
    reference: chr 2
allele count: 33
allele frequency: 2.755326965466569e-4
allele num: 119768
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.352C>T
  hgvsp: ENSP00000323659.5:p.Pro118Ser
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.196C>T
  hgvsp: ENSP00000438324.1:p.Pro66Ser
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.352C>T
  hgvsp: ENSP00000397660.1:p.Pro118Ser
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.352C>T
  hgvsp: ENSP00000394691.1:p.Pro118Ser
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.352C>T
  hgvsp: ENSP00000386516.1:p.Pro118Ser
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.352C>T
  hgvsp: ENSP00000386660.1:p.Pro118Ser
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000396561
  ensembl transcript: ENST00000452034
  gene symbol: KDM3A
  hgvsc: ENST00000452034.1:c.352C>T
  hgvsp: ENSP00000396561.1:p.Pro118Ser
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.159C>T
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3294
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13536
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38494
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4826
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1088
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1085
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro118Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ

2-86678250-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678250
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678250
    reference: chr 2
allele count: 1
allele frequency: 8.294900295298451e-6
allele num: 120556
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.367G>C
  hgvsp: ENSP00000386516.1:p.Ala123Pro
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.174G>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.367G>C
  hgvsp: ENSP00000323659.5:p.Ala123Pro
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.367G>C
  hgvsp: ENSP00000386660.1:p.Ala123Pro
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.367G>C
  hgvsp: ENSP00000397660.1:p.Ala123Pro
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.211G>C
  hgvsp: ENSP00000438324.1:p.Ala71Pro
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.367G>C
  hgvsp: ENSP00000394691.1:p.Ala123Pro
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38791
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3333
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13828
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48758
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala123Pro
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

2-86678264-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678264
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678264
    reference: chr 2
allele count: 1
allele frequency: 8.278968109414843e-6
allele num: 120788
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.381C>G
  hgvsp: ENST00000441719.1:c.381C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.381C>G
  hgvsp: ENST00000427678.1:c.381C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.225C>G
  hgvsp: ENST00000542128.1:c.225C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.381C>G
  hgvsp: ENST00000312912.5:c.381C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.188C>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.381C>G
  hgvsp: ENST00000409556.1:c.381C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.381C>G
  hgvsp: ENST00000409064.1:c.381C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13955
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38815
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2740
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1095
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser127Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

2-86678265-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678265
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678265
    reference: chr 2
allele count: 3
allele frequency: 2.483608185972581e-5
allele num: 120792
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.226A>G
  hgvsp: ENSP00000438324.1:p.Ile76Val
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.382A>G
  hgvsp: ENSP00000323659.5:p.Ile128Val
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.382A>G
  hgvsp: ENSP00000386516.1:p.Ile128Val
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.382A>G
  hgvsp: ENSP00000386660.1:p.Ile128Val
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.189A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.382A>G
  hgvsp: ENSP00000394691.1:p.Ile128Val
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.382A>G
  hgvsp: ENSP00000397660.1:p.Ile128Val
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13966
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38804
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48936
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile128Val
num of homozygotes: 1
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS

2-86678272-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678272
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678272
    reference: chr 2
allele count: 1
allele frequency: 8.276364358664525e-6
allele num: 120826
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.389C>G
  hgvsp: ENSP00000323659.5:p.Ser130Cys
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.389C>G
  hgvsp: ENSP00000397660.1:p.Ser130Cys
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.389C>G
  hgvsp: ENSP00000386660.1:p.Ser130Cys
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.389C>G
  hgvsp: ENSP00000386516.1:p.Ser130Cys
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.196C>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.233C>G
  hgvsp: ENSP00000438324.1:p.Ser78Cys
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.389C>G
  hgvsp: ENSP00000394691.1:p.Ser130Cys
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3346
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13993
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4915
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2739
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser130Cys
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

2-86678273-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678273
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678273
    reference: chr 2
allele count: 1
allele frequency: 8.276364358664525e-6
allele num: 120826
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.234T>C
  hgvsp: ENST00000542128.1:c.234T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.390T>C
  hgvsp: ENST00000427678.1:c.390T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.197T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.390T>C
  hgvsp: ENST00000312912.5:c.390T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.390T>C
  hgvsp: ENST00000409556.1:c.390T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.390T>C
  hgvsp: ENST00000409064.1:c.390T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.390T>C
  hgvsp: ENST00000441719.1:c.390T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13998
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38783
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3345
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2740
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1098
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser130Ser
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

2-86678277-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678277
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678277
    reference: chr 2
allele count: 6
allele frequency: 4.965983016338084e-5
allele num: 120822
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.201C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.394C>T
  hgvsp: ENSP00000394691.1:p.Arg132Cys
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.394C>T
  hgvsp: ENSP00000386660.1:p.Arg132Cys
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.394C>T
  hgvsp: ENSP00000386516.1:p.Arg132Cys
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.238C>T
  hgvsp: ENSP00000438324.1:p.Arg80Cys
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.394C>T
  hgvsp: ENSP00000397660.1:p.Arg132Cys
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.394C>T
  hgvsp: ENSP00000323659.5:p.Arg132Cys
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2745
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1090
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg132Cys
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-86678278-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678278
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678278
    reference: chr 2
allele count: 1
allele frequency: 8.276912380605539e-6
allele num: 120818
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.395G>A
  hgvsp: ENSP00000397660.1:p.Arg132His
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.395G>A
  hgvsp: ENSP00000323659.5:p.Arg132His
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.395G>A
  hgvsp: ENSP00000386516.1:p.Arg132His
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.202G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.239G>A
  hgvsp: ENSP00000438324.1:p.Arg80His
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.395G>A
  hgvsp: ENSP00000386660.1:p.Arg132His
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.395G>A
  hgvsp: ENSP00000394691.1:p.Arg132His
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3355
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14017
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38733
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1096
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2740
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg132His
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD

2-86678291-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678291
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678291
    reference: chr 2
allele count: 3
allele frequency: 2.48562480322137e-5
allele num: 120694
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.215T>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.408T>G
  hgvsp: ENSP00000323659.5:p.Asp136Glu
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.252T>G
  hgvsp: ENSP00000438324.1:p.Asp84Glu
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.408T>G
  hgvsp: ENSP00000386516.1:p.Asp136Glu
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.408T>G
  hgvsp: ENSP00000397660.1:p.Asp136Glu
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.408T>G
  hgvsp: ENSP00000394691.1:p.Asp136Glu
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.408T>G
  hgvsp: ENSP00000386660.1:p.Asp136Glu
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14080
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3348
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38501
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48799
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp136Glu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

2-86678296-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678296
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678296
    reference: chr 2
allele count: 1
allele frequency: 8.290774026663129e-6
allele num: 120616
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.413A>T
  hgvsp: ENSP00000394691.1:p.Gln138Leu
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.220A>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.413A>T
  hgvsp: ENSP00000397660.1:p.Gln138Leu
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.413A>T
  hgvsp: ENSP00000386660.1:p.Gln138Leu
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.257A>T
  hgvsp: ENSP00000438324.1:p.Gln86Leu
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.413A>T
  hgvsp: ENSP00000323659.5:p.Gln138Leu
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.413A>T
  hgvsp: ENSP00000386516.1:p.Gln138Leu
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3343
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48652
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4893
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2740
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gln138Leu
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/2-86678297-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678297
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678297
    reference: chr 2
allele count: 4
allele frequency: 3.316859597333245e-5
allele num: 120596
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.414A>C
  hgvsp: ENSP00000386516.1:p.Gln138His
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.414A>C
  hgvsp: ENSP00000394691.1:p.Gln138His
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.221A>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.414A>C
  hgvsp: ENSP00000397660.1:p.Gln138His
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.258A>C
  hgvsp: ENSP00000438324.1:p.Gln86His
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.414A>C
  hgvsp: ENSP00000323659.5:p.Gln138His
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.414A>C
  hgvsp: ENSP00000386660.1:p.Gln138His
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14070
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38344
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3344
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48612
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln138His
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

2-86678313-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678313
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678313
    reference: chr 2
allele count: 1
allele frequency: 8.333611120370679e-6
allele num: 119996
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.430A>G
  hgvsp: ENSP00000397660.1:p.Lys144Glu
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.274A>G
  hgvsp: ENSP00000438324.1:p.Lys92Glu
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.237A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.430A>G
  hgvsp: ENSP00000394691.1:p.Lys144Glu
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.430A>G
  hgvsp: ENSP00000323659.5:p.Lys144Glu
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.430A>G
  hgvsp: ENSP00000386516.1:p.Lys144Glu
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.430A>G
  hgvsp: ENSP00000386660.1:p.Lys144Glu
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14058
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37474
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47665
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1076
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Lys144Glu
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

2-86678320-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678320
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678320
    reference: chr 2
allele count: 1
allele frequency: 8.385884878572387e-6
allele num: 119248
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.437T>C
  hgvsp: ENSP00000394691.1:p.Leu146Pro
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.437T>C
  hgvsp: ENSP00000386516.1:p.Leu146Pro
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.244T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.437T>C
  hgvsp: ENSP00000397660.1:p.Leu146Pro
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.437T>C
  hgvsp: ENSP00000386660.1:p.Leu146Pro
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.281T>C
  hgvsp: ENSP00000438324.1:p.Leu94Pro
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.437T>C
  hgvsp: ENSP00000323659.5:p.Leu146Pro
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13991
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1818
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4733
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu146Pro
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

2-86678321-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678321
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678321
    reference: chr 2
allele count: 2
allele frequency: 1.676923850887931e-5
allele num: 119266
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.282T>G
  hgvsp: ENST00000542128.1:c.282T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.245T>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.438T>G
  hgvsp: ENST00000441719.1:c.438T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.438T>G
  hgvsp: ENST00000427678.1:c.438T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.438T>G
  hgvsp: ENST00000312912.5:c.438T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.438T>G
  hgvsp: ENST00000409556.1:c.438T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.438T>G
  hgvsp: ENST00000409064.1:c.438T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1832
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46539
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu146Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD

2-86678323-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678323
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678323
    reference: chr 2
allele count: 1
allele frequency: 8.40223163272165e-6
allele num: 119016
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.284T>G
  hgvsp: ENSP00000438324.1:p.Leu95Trp
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.247T>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.440T>G
  hgvsp: ENSP00000386516.1:p.Leu147Trp
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.440T>G
  hgvsp: ENSP00000386660.1:p.Leu147Trp
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.440T>G
  hgvsp: ENSP00000397660.1:p.Leu147Trp
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.440T>G
  hgvsp: ENSP00000323659.5:p.Leu147Trp
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.440T>G
  hgvsp: ENSP00000394691.1:p.Leu147Trp
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13978
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36131
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2047
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4728
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu147Trp
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD

2-86678324-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678324
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678324
    reference: chr 2
allele count: 2
allele frequency: 1.685203909673071e-5
allele num: 118680
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.248G>A
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.441G>A
  hgvsp: ENST00000441719.1:c.441G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.441G>A
  hgvsp: ENST00000409064.1:c.441G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.441G>A
  hgvsp: ENST00000427678.1:c.441G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.441G>A
  hgvsp: ENST00000409556.1:c.441G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.285G>A
  hgvsp: ENST00000542128.1:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.441G>A
  hgvsp: ENST00000312912.5:c.441G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13884
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3374
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35884
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu147Leu
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-86678333-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678333
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678333
    reference: chr 2
allele count: 3
allele frequency: 2.561912894961571e-5
allele num: 117100
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.450A>G
  hgvsp: ENSP00000386660.1:p.Ile150Met
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.450A>G
  hgvsp: ENSP00000397660.1:p.Ile150Met
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.450A>G
  hgvsp: ENSP00000386516.1:p.Ile150Met
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.450A>G
  hgvsp: ENSP00000394691.1:p.Ile150Met
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.294A>G
  hgvsp: ENSP00000438324.1:p.Ile98Met
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.450A>G
  hgvsp: ENSP00000323659.5:p.Ile150Met
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.257A>G
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33184
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13765
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1046
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1050
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4615
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4193
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42654
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile150Met
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: QD

2-86678343-CAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678343
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678341
    reference: chr 2
allele count: 1
allele frequency: 8.689003197553177e-6
allele num: 115088
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.453+9_453+10delTA
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.297+9_297+10delTA
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.453+9_453+10delTA
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.260+9_260+10delTA
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.453+9_453+10delTA
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.453+9_453+10delTA
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.453+9_453+10delTA
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2812
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5705
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2695
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4424
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1006
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6448
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 4.75e1
  variant carriers: 0
hgvs: c.453+9_453+10delTA
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: CAT
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ

2-86678345-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678345
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678345
    reference: chr 2
allele count: 10
allele frequency: 8.762705923589205e-5
allele num: 114120
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.297+9T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.453+9T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.453+9T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.453+9T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.453+9T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.453+9T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.260+9T>C
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12664
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3269
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27780
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7650
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1648
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 995
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1793
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1018
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: T
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

2-86678347-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678347
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678347
    reference: chr 2
allele count: 2
allele frequency: 1.75330937143859e-5
allele num: 114070
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.260+11G>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.453+11G>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.453+11G>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.453+11G>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.453+11G>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.453+11G>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.297+11G>T
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7702
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27659
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1807
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8046
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2695
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36713
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

2-86678352-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678352
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678352
    reference: chr 2
allele count: 1
allele frequency: 8.886677093701124e-6
allele num: 112528
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.453+16A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.453+16A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.260+16A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.453+16A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.297+16A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.453+16A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.453+16A>G
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3897
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12146
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2617
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10477
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23888
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2660
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 962
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3653
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 471
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2694
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP

2-86678362-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678362
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678362
    reference: chr 2
allele count: 1
allele frequency: 9.045353401957415e-6
allele num: 110554
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.260+26A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.453+26A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.453+26A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.453+26A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.453+26A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.297+26A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.453+26A>G
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14769
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4535
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10373
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25810
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3474
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 2693
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 835
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genotype quality: GenotypeQuality
  all individuals: 2814
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 218
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/2-86678368-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678368
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678368
    reference: chr 2
allele count: 1
allele frequency: 9.149465671204801e-6
allele num: 109296
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.260+32A>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.453+32A>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.453+32A>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.453+32A>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.453+32A>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.297+32A>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.453+32A>C
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16772
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8526
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4867
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13873
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12801
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19727
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genotype quality: GenotypeQuality
  all individuals: 6484
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1193
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4277
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2468
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

2-86678370-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678370
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678370
    reference: chr 2
allele count: 1
allele frequency: 9.252748066175653e-6
allele num: 108076
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.453+34C>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.260+34C>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.453+34C>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.453+34C>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.453+34C>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.297+34C>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.453+34C>G
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17063
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7637
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11453
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11871
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5075
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12604
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4522
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2304
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1416
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7143
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5159
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

2-86678375-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678375
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678375
    reference: chr 2
allele count: 1
allele frequency: 9.387379606856542e-6
allele num: 106526
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.453+39A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.453+39A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.453+39A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.297+39A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.453+39A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.260+39A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.453+39A>G
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16800
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14721
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6343
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5731
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9598
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2688
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2107
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12214
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4806
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12074
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-86678376-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678376
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678376
    reference: chr 2
allele count: 15
allele frequency: 1.414560543191249e-4
allele num: 106040
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.453+40T>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.453+40T>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.453+40T>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.260+40T>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.453+40T>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.297+40T>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.453+40T>G
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9255
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5872
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15535
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6033
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16551
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4845
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6745
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2761
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8025
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2021
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10791
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP

2-86678378-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86678378
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86678378
    reference: chr 2
allele count: 10
allele frequency: 9.523265337218826e-5
allele num: 105006
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.453+42C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.260+42C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.453+42C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.453+42C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.453+42C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.297+42C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.453+42C>T
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5481
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15909
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6301
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16366
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9257
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2790
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11534
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1826
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3135
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 935
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1944
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4851
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

2-86682157-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86682157
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86682157
    reference: chr 2
allele count: 3
allele frequency: 3.269754768392371e-5
allele num: 91750
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.454-51C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.261-51C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.298-51C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.454-51C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.454-51C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.454-51C>T
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.454-51C>T
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12602
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5335
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12895
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19988
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3424
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1224
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1308
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3846
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5165
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3425
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ

2-86682164-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86682164
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86682164
    reference: chr 2
allele count: 1
allele frequency: 1.0808006571268e-5
allele num: 92524
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.454-44T>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.261-44T>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.454-44T>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.454-44T>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.454-44T>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.298-44T>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.454-44T>G
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19837
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9705
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8684
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12620
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1617
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8448
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10819
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4293
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7390
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-86682165-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86682165
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86682165
    reference: chr 2
allele count: 145
allele frequency: 1.568177885447309e-3
allele num: 92464
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.454-43A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.298-43A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.454-43A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.454-43A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.454-43A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.261-43A>G
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.454-43A>G
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9562
  bin: 2.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12607
  bin: 7.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 8984
  bin: 1.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19700
  bin: 1.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4737
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1260
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1310
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3914
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11145
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 1
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

2-86682171-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86682171
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 86682171
    reference: chr 2
allele count: 1
allele frequency: 1.068284761986155e-5
allele num: 93608
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000438324
  ensembl transcript: ENST00000542128
  gene symbol: KDM3A
  hgvsc: ENST00000542128.1:c.298-37T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000394691
  ensembl transcript: ENST00000441719
  gene symbol: KDM3A
  hgvsc: ENST00000441719.1:c.454-37T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386516
  ensembl transcript: ENST00000409064
  gene symbol: KDM3A
  hgvsc: ENST00000409064.1:c.454-37T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000323659
  ensembl transcript: ENST00000312912
  gene symbol: KDM3A
  hgvsc: ENST00000312912.5:c.454-37T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000397660
  ensembl transcript: ENST00000427678
  gene symbol: KDM3A
  hgvsc: ENST00000427678.1:c.454-37T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl protein: ENSP00000386660
  ensembl transcript: ENST00000409556
  gene symbol: KDM3A
  hgvsc: ENST00000409556.1:c.454-37T>C
  variant of: http://identifiers.org/hgnc/20815
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115548
  ensembl transcript: ENST00000463013
  gene symbol: KDM3A
  hgvsc: ENST00000463013.1:n.261-37T>C
  variant of: http://identifiers.org/hgnc/20815
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4794
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12683
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16237
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5727
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4534
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12212
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7687
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15788
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1774
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1925
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: T

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8490
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2675
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38223
bin: 9.75e1
variant carriers: 23

GenotypeQuality
all individuals: 1827
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3024
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2332
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 22
allele frequency: 2.542177027963947e-3
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66656
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.075334143377886e-5
allele num: 16460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.42e-1

FS
type: SiteQuality
SIO_000300: 1.104e0

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -6.57e-1

DP
type: SiteQuality
SIO_000300: 2.741484e6

VQSLOD
type: SiteQuality
SIO_000300: 3.9e0

QD
type: SiteQuality
SIO_000300: 1.299e1

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeQuality
all individuals: 8406
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1461
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2428
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3026
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1828
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2676
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66642
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.65e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.35e-1

FS
type: SiteQuality
SIO_000300: 1.003e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

QD
type: SiteQuality
SIO_000300: 1.474e1

DP
type: SiteQuality
SIO_000300: 2.739747e6

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3027
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1828
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500780405811022e-5
allele num: 66632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.738591e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 8.100000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.379e0

MQ
type: SiteQuality
SIO_000300: 3.683e1

FS
type: SiteQuality
SIO_000300: 9.1434e1

MQRankSum
type: SiteQuality
SIO_000300: -2.418e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.578e0

VQSLOD
type: SiteQuality
SIO_000300: -1.062e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.41e0

GenotypeQuality
all individuals: 38
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8285
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variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38224
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2333
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2435
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2672
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16340
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.50220608097968e-5
allele num: 66634
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -7.567e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.15e-1

MQ
type: SiteQuality
SIO_000300: 4.123e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.586e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.925e0

DP
type: SiteQuality
SIO_000300: 2.738702e6

QD
type: SiteQuality
SIO_000300: 3.43e0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8224
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1827
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3026
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
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variant carriers: 0

GenotypeQuality
all individuals: 2327
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variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1457
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variant carriers: 0

GenotypeQuality
all individuals: 2670
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variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2427
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501456412720339e-5
allele num: 66602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

DP
type: SiteQuality
SIO_000300: 2.737892e6

FS
type: SiteQuality
SIO_000300: 6.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

MQ
type: SiteQuality
SIO_000300: 5.916e1

QD
type: SiteQuality
SIO_000300: 1.195e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.6e-2

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 545
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 3.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2275
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variant carriers: 0

GenotypeQuality
all individuals: 2667
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2423
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1450
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variant carriers: 0

GenotypeQuality
all individuals: 38221
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 81
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16168
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502810255177181e-5
allele num: 66542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.97e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.629999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

QD
type: SiteQuality
SIO_000300: 1.188e1

MQ
type: SiteQuality
SIO_000300: 5.956e1

DP
type: SiteQuality
SIO_000300: 2.734508e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.609e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7959
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variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 19
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GenotypeQuality
all individuals: 1445
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GenotypeQuality
all individuals: 555
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GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
all individuals: 3026
bin: 9.25e1
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GenotypeQuality
all individuals: 2422
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16162
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.6e-1

QD
type: SiteQuality
SIO_000300: 1.425e1

DP
type: SiteQuality
SIO_000300: 2.734122e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.35e-1

GenotypeQuality
all individuals: 107
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
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GenotypeQuality
all individuals: 716
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 38221
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2272
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variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.246105919003115e-4
allele num: 16050
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66496
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.57e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.47e-1

FS
type: SiteQuality
SIO_000300: 2.205e0

MQRankSum
type: SiteQuality
SIO_000300: 9.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.54e0

VQSLOD
type: SiteQuality
SIO_000300: 9.71e-1

DP
type: SiteQuality
SIO_000300: 2.731089e6

QD
type: SiteQuality
SIO_000300: 1.27e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2423
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GenotypeQuality
all individuals: 2665
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.28693574751666e-5
allele num: 15906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.65e-1

DP
type: SiteQuality
SIO_000300: 2.727901e6

MQ
type: SiteQuality
SIO_000300: 5.98e1

FS
type: SiteQuality
SIO_000300: 3.919e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.43e-1

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.547e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.704968944099378e-5
allele num: 10304
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15636
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.1e-1

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.602e0

MQ
type: SiteQuality
SIO_000300: 5.723e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.504e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66266
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.290988897495481e-4
allele num: 15492
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.16e0

QD
type: SiteQuality
SIO_000300: 1.363e1

MQRankSum
type: SiteQuality
SIO_000300: 3.97e-1

FS
type: SiteQuality
SIO_000300: 4.4e-1

BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
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DP
type: SiteQuality
SIO_000300: 2.717718e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10238
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65798
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.404691670178396e-4
allele num: 14238
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.55e-1

MQ
type: SiteQuality
SIO_000300: 5.982e1

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
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VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

FS
type: SiteQuality
SIO_000300: 1.1692e1

BaseQRankSum
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SIO_000300: 4.97e0

DP
type: SiteQuality
SIO_000300: 2.685555e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10206
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13820
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.522997258604934e-5
allele num: 65660
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.864e1

QD
type: SiteQuality
SIO_000300: 1.594e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.311e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.85e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

VQSLOD
type: SiteQuality
SIO_000300: -3.514e0

DP
type: SiteQuality
SIO_000300: 2.677092e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.961553550411926e-4
allele num: 10196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.141046345104969e-5
allele num: 65638
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

QD
type: SiteQuality
SIO_000300: 1.249e1

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

FS
type: SiteQuality
SIO_000300: 6.18e-1

BaseQRankSum
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SIO_000300: 2.7e0

MQRankSum
type: SiteQuality
SIO_000300: 5.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.83e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.69e-1

DP
type: SiteQuality
SIO_000300: 2.675998e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13476
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.84251968503937e-5
allele num: 10160
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.51e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.729e1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.670952e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10106
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65312
num of homozygotes: 0

Latino
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East Asian
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allele frequency: 1.160092807424594e-4
allele num: 8620
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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DP
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 12492
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.811250581125058e-4
allele num: 8604
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Other
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.82e-1

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
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MQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.534495457893445e-5
allele num: 65168
num of homozygotes: 0

East Asian
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South Asian
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele num: 862
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e-1

VQSLOD
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InbreedingCoeff
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MQ
type: SiteQuality
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MQRankSum
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DP
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FS
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ReadPosRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65168
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9998
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 8.085381630012937e-5
allele num: 12368
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.07e0

QD
type: SiteQuality
SIO_000300: 8.869999999999999e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 1.3e-3

MQRankSum
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SIO_000300: -2.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.7e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.47e-1

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12342
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7704
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.678810059429876e-5
allele num: 59566
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10560
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9892
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.498e0

ClippingRankSum
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SIO_000300: -1.932e0

DP
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SIO_000300: 1.207897e6

ReadPosRankSum
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InbreedingCoeff
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SIO_000300: 2.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
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MQRankSum
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SIO_000300: -1.186e0

QD
type: SiteQuality
SIO_000300: 7.05e0

BaseQRankSum
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SIO_000300: -1.932e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6370
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9916
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59702
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.892060197197717e-4
allele num: 7708
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10604
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

FS
type: SiteQuality
SIO_000300: 2.984e0

DP
type: SiteQuality
SIO_000300: 1.216686e6

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 3.18e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.56e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59676
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12356
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.594706798131811e-4
allele num: 7708
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.007455168245013e-4
allele num: 9926
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6360
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10592
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.124e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

QD
type: SiteQuality
SIO_000300: 1.441e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.75e0

DP
type: SiteQuality
SIO_000300: 1.230328e6

MQRankSum
type: SiteQuality
SIO_000300: -4.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.24e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7732
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.67117884956048e-5
allele num: 59838
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9938
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.117e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.24e-1

QD
type: SiteQuality
SIO_000300: 1.92e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.49e-1

DP
type: SiteQuality
SIO_000300: 1.251867e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-1

FS
type: SiteQuality
SIO_000300: 4.327e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9952
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.667222407469156e-5
allele num: 59980
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10636
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7754
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.45e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.81e-1

FS
type: SiteQuality
SIO_000300: 7.04e-1

BaseQRankSum
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SIO_000300: 1.34e0

DP
type: SiteQuality
SIO_000300: 1.267219e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.564e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 19

East Asian
type: Population
allele count: 19
allele frequency: 2.44782272610152e-3
allele num: 7762
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59978
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6374
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12550
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.094e0

InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 6.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.693e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.11e-1

MQ
type: SiteQuality
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VQSLOD
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SIO_000300: 2.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.27e-1

DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.431e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10724
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 60664
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 5.470459518599562e-4
allele num: 12796
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.39e-1

ReadPosRankSum
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VQSLOD
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.027e1

DP
type: SiteQuality
SIO_000300: 1.335696e6

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.649185302460584e-5
allele num: 60636
num of homozygotes: 0

East Asian
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12724
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9986
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.55e0

FS
type: SiteQuality
SIO_000300: 1.78e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

MQRankSum
type: SiteQuality
SIO_000300: -1.2e-2

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 6.870000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.238e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2752
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 623
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.28590674596655e-5
allele num: 60866
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10006
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10770
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7888
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.9e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.351185e6

VQSLOD
type: SiteQuality
SIO_000300: 2.27e0

QD
type: SiteQuality
SIO_000300: 1.488e1

MQRankSum
type: SiteQuality
SIO_000300: 2.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

GenotypeQuality
all individuals: 42
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1396
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6436
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10930
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.609321188322765e-5
allele num: 62138
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.982160555004955e-4
allele num: 10090
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13224
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8076
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.81e-1

DP
type: SiteQuality
SIO_000300: 1.41138e6

MQRankSum
type: SiteQuality
SIO_000300: -1.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.7e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.98e-1

QD
type: SiteQuality
SIO_000300: 1.546e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.056e0

GenotypeQuality
all individuals: 392
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 409
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 21

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1699
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variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.089256498818396e-5
allele num: 11002
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10144
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62672
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.478312892611427e-5
allele num: 13372
num of homozygotes: 0

East Asian
type: Population
allele count: 17
allele frequency: 2.080274106705825e-3
allele num: 8172
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.546099290780142e-3
allele num: 846
num of homozygotes: 1

DP
type: SiteQuality
SIO_000300: 1.431409e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.87e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-3

FS
type: SiteQuality
SIO_000300: 1.468e0

VQSLOD
type: SiteQuality
SIO_000300: 2.87e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.13e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.743e0

QD
type: SiteQuality
SIO_000300: 1.608e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.83e-1

GenotypeQuality
all individuals: 995
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 811
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GenotypeQuality
all individuals: 449
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.588158688816186e-5
allele num: 62966
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11032
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.537e1

FS
type: SiteQuality
SIO_000300: 2.319e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

DP
type: SiteQuality
SIO_000300: 1.441461e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.596e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

GenotypeQuality
all individuals: 49
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1158
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1084
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variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.989572096368213e-5
allele num: 11124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13812
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.570845114671693e-5
allele num: 63660
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10202
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.416e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.08e0

FS
type: SiteQuality
SIO_000300: 1.712e0

DP
type: SiteQuality
SIO_000300: 1.461105e6

GenotypeQuality
all individuals: 132
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 451
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variant carriers: 0

GenotypeQuality
all individuals: 225
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GenotypeQuality
all individuals: 4535
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 600
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GenotypeQuality
all individuals: 275
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GenotypeQuality
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GenotypeQuality
all individuals: 2451
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GenotypeQuality
all individuals: 44810
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variant carriers: 0

GenotypeQuality
all individuals: 675
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variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.91754288876591e-5
allele num: 14456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11222
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64694
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.3195e1

VQSLOD
type: SiteQuality
SIO_000300: -2.867e0

MQRankSum
type: SiteQuality
SIO_000300: -9.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.64e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.418e0

QD
type: SiteQuality
SIO_000300: 1.325e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.447e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

MQ
type: SiteQuality
SIO_000300: 5.788e1

DP
type: SiteQuality
SIO_000300: 1.492442e6

GenotypeQuality
all individuals: 70
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 8

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 71
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 317
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.696129637069774e-5
allele num: 14934
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.595869844965991e-5
allele num: 65276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.54924578527063e-4
allele num: 11270
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.507868e6

MQRankSum
type: SiteQuality
SIO_000300: -2.7e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.47e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

QD
type: SiteQuality
SIO_000300: 1.476e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.76e0

VQSLOD
type: SiteQuality
SIO_000300: 2.97e0

GenotypeQuality
all individuals: 452
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 24
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 681
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GenotypeQuality
all individuals: 1076
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.589120724469192e-5
allele num: 65372
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15032
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11280
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.9e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.73e0

DP
type: SiteQuality
SIO_000300: 1.511217e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.19e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.144e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.15e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 136
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GenotypeQuality
all individuals: 65
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1083
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GenotypeQuality
all individuals: 2743
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523925632429137e-5
allele num: 65620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15262
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.899e0

QD
type: SiteQuality
SIO_000300: 1.507e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e0

DP
type: SiteQuality
SIO_000300: 1.52019e6

VQSLOD
type: SiteQuality
SIO_000300: -1.122e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

GenotypeQuality
all individuals: 682
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1243
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1071
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.600104004160167e-4
allele num: 15384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11328
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.520866285436184e-5
allele num: 65752
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.524257e6

MQRankSum
type: SiteQuality
SIO_000300: 1.71e-1

QD
type: SiteQuality
SIO_000300: 1.154e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.81e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.809900069718801e-4
allele num: 8606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65752
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.500260010400417e-5
allele num: 15384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11328
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.81e0

DP
type: SiteQuality
SIO_000300: 1.524257e6

MQRankSum
type: SiteQuality
SIO_000300: 1.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.154e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 679
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.816308357715303e-4
allele num: 15722
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66058
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11362
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.424e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.71e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.15e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.21e-1

DP
type: SiteQuality
SIO_000300: 1.532425e6

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-2

QD
type: SiteQuality
SIO_000300: 1.394e1

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 898
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variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66058
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15722
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.894635275955229e-4
allele num: 10364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.394e1

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

FS
type: SiteQuality
SIO_000300: 6.424e0

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.15e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.01e0

DP
type: SiteQuality
SIO_000300: 1.532425e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 90
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 112
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2769
bin: 9.75e1
variant carriers: 33

GenotypeQuality
all individuals: 48056
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.043213633597079e-4
allele num: 6572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.928640308582449e-4
allele num: 10370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 29
allele frequency: 4.386097583108987e-4
allele num: 66118
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.02e-1

DP
type: SiteQuality
SIO_000300: 1.536028e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.82e0

FS
type: SiteQuality
SIO_000300: 5.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.585e0

QD
type: SiteQuality
SIO_000300: 1.297e1

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2740
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 36
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4883
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GenotypeQuality
all individuals: 315
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16240
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66378
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.626492106276473e-5
allele num: 10388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.54403e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.29e-1

FS
type: SiteQuality
SIO_000300: 7.734e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.66e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.87e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.68e-1

QD
type: SiteQuality
SIO_000300: 1.24e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.149e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 48945
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504573904670197e-5
allele num: 66464
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.357e0

VQSLOD
type: SiteQuality
SIO_000300: -7.279e-1

QD
type: SiteQuality
SIO_000300: 9.18e0

MQRankSum
type: SiteQuality
SIO_000300: 1.87e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.74e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.448e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

DP
type: SiteQuality
SIO_000300: 1.547111e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 2740
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 7.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66462
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.832620647525962e-4
allele num: 16370
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.71e-1

DP
type: SiteQuality
SIO_000300: 1.547153e6

MQRankSum
type: SiteQuality
SIO_000300: -2.31e-1

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.959e1

QD
type: SiteQuality
SIO_000300: 1.388e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.580000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.83e-1

FS
type: SiteQuality
SIO_000300: 6.97e-1

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 450
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GenotypeQuality
all individuals: 48946
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504347564461293e-5
allele num: 66474
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.58e0

MQRankSum
type: SiteQuality
SIO_000300: -1.28e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.61e-1

DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.328e1

MQ
type: SiteQuality
SIO_000300: 5.928e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66476
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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FS
type: SiteQuality
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VQSLOD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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ClippingRankSum
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SIO_000300: 2.72e-1

MQ
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.431e0

DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

East Asian
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allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
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European (Non-Finnish)
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allele count: 5
allele frequency: 7.521737822306465e-5
allele num: 66474
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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InbreedingCoeff
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QD
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MQ
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FS
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BaseQRankSum
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VQSLOD
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MQRankSum
type: SiteQuality
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DP
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
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East Asian
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allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66474
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQ
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SIO_000300: 6.0e1

VQSLOD
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DP
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.34e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

African
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allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 4.516711833785005e-5
allele num: 66420
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 898
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East Asian
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allele frequency: 0.0e0
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InbreedingCoeff
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SIO_000300: 1.61e-2

ClippingRankSum
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QD
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
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FS
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DP
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BaseQRankSum
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.73e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16290
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10382
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.506160195198361e-5
allele num: 66394
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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SIO_000300: 1.55e-1

ReadPosRankSum
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.31e-1

QD
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 4
allele frequency: 6.025366794203597e-5
allele num: 66386
num of homozygotes: 0

MQ
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VQSLOD
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ReadPosRankSum
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DP
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QD
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FS
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 1.160092807424594e-4
allele num: 8620
num of homozygotes: 0

African
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Other
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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allele frequency: 0.0e0
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InbreedingCoeff
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MQRankSum
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FS
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VQSLOD
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MQ
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ClippingRankSum
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QD
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BaseQRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11362
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 65832
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European (Finnish)
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African
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Other
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South Asian
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VQSLOD
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MQ
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BaseQRankSum
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InbreedingCoeff
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QD
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FS
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

East Asian
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European (Non-Finnish)
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African
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allele num: 10306
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Latino
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European (Finnish)
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Other
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South Asian
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MQ
type: SiteQuality
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QD
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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DP
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FS
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15592
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 9.718172983479106e-5
allele num: 10290
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65756
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.519952e6

ReadPosRankSum
type: SiteQuality
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QD
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -3.41e-1

FS
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BaseQRankSum
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SIO_000300: -1.646e0

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.84e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.525041176111755e-5
allele num: 65572
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.821453775582216e-5
allele num: 11336
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

QD
type: SiteQuality
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FS
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BaseQRankSum
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VQSLOD
type: SiteQuality
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MQRankSum
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SIO_000300: -4.6e-2

InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 5.945e1

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -5.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.085277057879798e-5
allele num: 64824
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.87941751021133e-5
allele num: 11262
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10200
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.03e-1

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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DP
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.435e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63714
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 1.19703136222169e-4
allele num: 8354
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10140
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11142
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.97e-1

DP
type: SiteQuality
SIO_000300: 1.442943e6

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.34e0

QD
type: SiteQuality
SIO_000300: 1.495e1

MQRankSum
type: SiteQuality
SIO_000300: 8.05e-1

MQ
type: SiteQuality
SIO_000300: 6.054e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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South Asian
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allele count: 10
allele frequency: 7.032348804500703e-4
allele num: 14220
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63148
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10086
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11088
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8248
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.349e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.408856e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

MQRankSum
type: SiteQuality
SIO_000300: -3.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

QD
type: SiteQuality
SIO_000300: 1.241e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.12e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14216
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8244
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.168668208751862e-5
allele num: 63118
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11086
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Other
type: Population
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allele num: 858
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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MQ
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.45e0

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.605291039265419e-5
allele num: 62294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
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Latino
type: Population
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African
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East Asian
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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QD
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ClippingRankSum
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VQSLOD
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
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SIO_000300: 1.36127e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele num: 10850
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South Asian
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Other
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European (Non-Finnish)
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allele count: 1
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allele num: 61252
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East Asian
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African
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European (Finnish)
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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FS
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MQ
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DP
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InbreedingCoeff
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BaseQRankSum
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QD
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

Latino
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European (Finnish)
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African
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South Asian
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European (Non-Finnish)
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East Asian
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QD
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VQSLOD
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MQRankSum
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BaseQRankSum
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FS
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MQ
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6352
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 59858
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South Asian
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Other
type: Population
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allele num: 820
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Latino
type: Population
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African
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InbreedingCoeff
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FS
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MQRankSum
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MQ
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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DP
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QD
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 869
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7850
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59076
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10584
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.101101749837978e-5
allele num: 12344
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6326
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7660
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.608e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.997e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

DP
type: SiteQuality
SIO_000300: 1.158787e6

MQRankSum
type: SiteQuality
SIO_000300: -9.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.8e-1

GenotypeQuality
all individuals: 188
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1698
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2571
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11753
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1161
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2702
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 299
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 907
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9682
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58780
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10582
num of homozygotes: 0

South Asian
type: Population
allele count: 15
allele frequency: 1.226291693917593e-3
allele num: 12232
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.24e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.38e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.54e0

QD
type: SiteQuality
SIO_000300: 1.483e1

DP
type: SiteQuality
SIO_000300: 1.149322e6

GenotypeQuality
all individuals: 369
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6907
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
all individuals: 10130
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2698
bin: 9.75e1
variant carriers: 9

East Asian
type: Population
allele count: 1
allele frequency: 1.315097317201473e-4
allele num: 7604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.588114050154586e-5
allele num: 58220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10472
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 3.331112591605596e-4
allele num: 12008
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.164e1

VQSLOD
type: SiteQuality
SIO_000300: 5.04e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.141985e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e0

GenotypeQuality
all individuals: 235
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8531
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4781
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4483
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 513
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 356
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variant carriers: 0

GenotypeQuality
all individuals: 414
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3597
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variant carriers: 0

GenotypeQuality
all individuals: 7521
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11286
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.033060357901122e-4
allele num: 6594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8680
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.177856301531213e-4
allele num: 8490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50100
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.112774e6

QD
type: SiteQuality
SIO_000300: 1.315e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.909e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1557
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4782
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1398
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3213
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1132
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 357
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7996
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5920
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50520
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.74737578726382e-5
allele num: 11432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 722
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8748
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.087e0

QD
type: SiteQuality
SIO_000300: 8.25e0

DP
type: SiteQuality
SIO_000300: 1.133226e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.44e0

VQSLOD
type: SiteQuality
SIO_000300: -5.496e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.149999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.06e-1

GenotypeQuality
all individuals: 1406
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1127
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 8361
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 593
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variant carriers: 1

GenotypeQuality
all individuals: 3087
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 9053
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 506
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variant carriers: 1

GenotypeQuality
all individuals: 7253
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4592
bin: 9.75e1
variant carriers: 140

GenotypeQuality
all individuals: 215
bin: 5.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5912
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 9.904520423121112e-5
allele num: 50482
num of homozygotes: 0

African
type: Population
allele count: 131
allele frequency: 1.531447276128127e-2
allele num: 8554
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 722
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.736676568233443e-5
allele num: 11446
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 9.165902841429881e-4
allele num: 8728
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.140301e6

MQRankSum
type: SiteQuality
SIO_000300: 2.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

QD
type: SiteQuality
SIO_000300: 1.666e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.12e0

VQSLOD
type: SiteQuality
SIO_000300: 5.68e0

GenotypeQuality
all individuals: 546
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1694
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 836
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GenotypeQuality
all individuals: 438
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 624
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GenotypeQuality
all individuals: 358
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GenotypeQuality
all individuals: 433
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6702
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.564576909900651e-5
allele num: 11676
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51084
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0